University of Rostock

Department of Anatomy

Neuroscience Group

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Rat connectome



Fornix left


Abbreviation
f
Color       
Superior regionsFimbria fornix region

SynonymsAbbr.Language
Body of the fornix Eng
FornixfEng
 FXEng

SubregionsSide
Region around the fornixleft
Subependymal regions ventral to the fornixleft
Columns of the fornixleft
Posterior-basal portion of the fornixleft
Fornix coreleft
Around the descending columns of the fornixleft

Output to

NameSideAbbr.WeightDetails
Central gray mesencephalic part inferior colliculus levelipsiCGMinf0.5
Central gray mesencephalic part intercollicular levelipsiCGMint-1
Central gray mesencephalic part superior colliculus levelipsiCGMsc1
ProsencephalonipsiPRC0
Diagonal band of BrocaipsiDBB-2
Nucleus of the horizontal limb of the diagonal band medial edgeipsiHDBmE1
Nucleus of the vertical limb of the diagonal bandipsiVDB-2
Medial septal nucleusipsiMS-2
Lateral preoptic area dorsomedial to the supraoptic nucleus anterior partipsiLPOdmSOA1
Nucleus medianus of the medial preoptic areaipsiMPAme-0.5
Vascular organ of the lamina terminalisipsiVOLT-0.5
Periventricular zoneipsiPVZ-0.5
Anterior periventricular nucleusipsiPeA-0.5
Supraoptic nucleus anterior divisionipsiSOA1
Perifornical nucleus dorsal partipsiPeFD-0.5
ThalamusipsiT3
Anteroventral thalamic nucleusipsiAV3
Midline group of the dorsal thalamusipsiMTN3
Paratenial thalamic nucleusipsiPT3
Reuniens thalamic nucleusipsiRe3
Posterior lobe of pituitaryipsiPPit-2
Bed nucleus of the stria terminalis anterior divisionipsiBSTA-2
Dorsal hippocampusipsiHIPPd-0.5
Ventral hippocampusipsiHIPPv-0.5
Lateral septal nucleusipsiLS-2
Dorsolateral nucleus lumbal segment 5ipsiDLNL51
Dorsal horn L5ipsiDHL51
Ventral horn L5ipsiVHL51
Spinal nucleus of the bulbocavernosus lumbal segment 5ipsiBCL51
Dorsolateral nucleus lumbal segment 6ipsiDLNL61
Dorsal horn L6ipsiDHL61
Ventral horn L6ipsiVHL61
Spinal nucleus of the bulbocavernosus lumbal segment 6ipsiBCL61

Input from

NameSideAbbr.WeightDetails
Parabigeminal nucleusipsiPBG0
Periaqueductal gray caudal partipsiPAGc-2
Substantia nigra A9ipsiSN-2
Ventral tegmental area A10ipsiVTA-2
Peripeduncular nucleusipsiPP-2
Dorsal tegmental nucleusipsiDTg-2
Dorsal tegmental nucleus lateral partipsiDLTN-2
A7 noradrenaline cellsipsiA70
Locus coeruleusipsiLC-0.5
Locus coeruleus anterior partipsiLCa0
Locus coeruleus dorsal half of the compact partipsiLCcDhC3
Locus coeruleus coreipsiLCco0.5
Locus coeruleus dorsal partipsiLCD3
Locus coeruleus dorsal edgeipsiLCDe3
Locus coeruleus posterior partipsiLCp3
Locus coeruleus ventral partipsiLCv3
Extreme ventral part of the locus coeruleusipsiLCev0
Locus coeruleus ventromedial partipsiVMLC0
Pontine reticular nucleus oral partipsiPnO-2
Pontine reticular nucleus caudal partipsiPNC-2
Parabrachial nucleusipsiPB-2
Parabrachial nucleus dorsal partipsiPBD-2
Parabrachial nucleus ventral partipsiPBV-2
Subcoeruleus nucleusipsiSubC0
C1 adrenaline cellsipsiC1-2
C2 adrenaline cellsipsiC2-2
Raphe nucleiipsiRAN-2
Dorsal raphe nucleusipsiDR-2
Dorsal raphe nucleus caudal partipsiDRC-2
Median raphe nucleusipsiMnR-2
Pontine raphe nucleusipsiPnR-2
Raphe magnus nucleusipsiRMg-2
A1 noradrenergic cellsipsiA1-2
A2 noradrenergic cellsipsiA2-2
Diagonal band of BrocaipsiDBB-2
Medial septal nucleusipsiMS-0.5
Medial septal nucleus mid-dorsal aspectipsiMSmda0
Substantia innominataipsiSI-2
Medial preoptic areaipsiMPA-2
Magnocellular preoptic nucleusipsiMCPO-2
Tuberomammillary nucleusipsiTuM-2
Dorsomedial hypothalamic nucleusipsiDMHy-2
Lateral hypothalamic areaipsiLH-2
Posterolateral hypothalamusipsiPLHY-2
Anterior hypothalamic areaipsiAHA-2
Anterior hypothalamic nucleusipsiAHn-2
Posterior hypothalamic nucleusipsiPH1
Ventromedial hypothalamic nucleusipsiVMH2
Ventromedial hypothalamic nucleus anterior partipsiVMHA-2
Arcuate nucleus parts part 2ipsiArcPaP2-2
Arcuate nucleus parts part 3ipsiArcPaP3-2
Arcuate nucleus parts part 4ipsiArcPaP4-2
Arcuate nucleus parts part 5ipsiArcPaP5-2
Paraventricular hypothalamic nucleusipsiPa-2
Preoptic periventricular nucleusipsiPePO0
Suprachiasmatic nucleusipsiSCh-2
Supraoptic nucleus [Supraoptic region]ipsiSO-2
Lateral mammillary nucleusipsiLM0
Premammillary nucleusipsiPMAN-2
Supramammillar nucleusipsiSuM-2
A11 dopamine cellsipsiA11-2
A8 dopamine cells retrorubral groupipsiRRF-2
Basolateral amygdaloid nucleusipsiBL-2
Basomedial amygdaloid nucleusipsiBM-2
Bed nucleus of the stria terminalisipsiBST-0.5
Anterior cortical amygdaloid nucleusipsiACo-2
Posterior amygdaloid nucleusipsiCOAp-2
Nucleus of the lateral olfactory tractipsiLOT-2
Medial amygdaloid nucleusipsiMe-2
Posteromedial cortical nucleusipsiPMCo-2
Dentate gyrusipsiDG0
Hilus of the dentate gyrusipsiHil-2
Field CA1 of hippocampusipsiCA1-0.5
Subiculum dorsal partipsiSd-2
Subiculum ventral partipsiSv-2
Subiculum ventral part medial partipsiSvm-2
PostsubiculumipsiPost-2
Interpeduncular nucleusipsiIP-2
Septal regionipsiSER-2
Lateral septal nucleusipsiLS-2
Lateral septal nucleus ventral partipsiLSV1
Septofimbrial nucleusipsiSFi3
Parabigeminal nucleuscontraPBG0
Periaqueductal gray caudal partcontraPAGc-2
Substantia nigra A9contraSN0
Ventral tegmental area A10contraVTA-2
Peripeduncular nucleuscontraPP0
Dorsal tegmental nucleuscontraDTg-2
Dorsal tegmental nucleus lateral partcontraDLTN-2
A7 noradrenaline cellscontraA70
Locus coeruleuscontraLC-2
Pontine reticular nucleus oral partcontraPnO-2
Pontine reticular nucleus caudal partcontraPNC-2
Parabrachial nucleus dorsal partcontraPBD-2
Parabrachial nucleus ventral partcontraPBV0
C1 adrenaline cellscontraC10
C2 adrenaline cellscontraC20
Dorsal raphe nucleus caudal partcontraDRC-2
A1 noradrenergic cellscontraA10
A2 noradrenergic cellscontraA20
Medial septal nucleuscontraMS-2
Medial preoptic areacontraMPA-2
Magnocellular preoptic nucleuscontraMCPO0
Dorsomedial hypothalamic nucleuscontraDMHy-2
Lateral hypothalamic areacontraLH-2
Anterior hypothalamic areacontraAHA0
Ventromedial hypothalamic nucleuscontraVMH-2
Ventromedial hypothalamic nucleus anterior partcontraVMHA0
Arcuate nucleus parts part 2contraArcPaP2-2
Arcuate nucleus parts part 3contraArcPaP3-2
Arcuate nucleus parts part 4contraArcPaP4-2
Arcuate nucleus parts part 5contraArcPaP50
Paraventricular hypothalamic nucleuscontraPa0
Preoptic periventricular nucleuscontraPePO0
Suprachiasmatic nucleuscontraSCh0
Supraoptic nucleus [Supraoptic region]contraSO0
Lateral mammillary nucleuscontraLM0
Premammillary nucleuscontraPMAN-2
Supramammillar nucleuscontraSuM-2
A11 dopamine cellscontraA11-2
A8 dopamine cells retrorubral groupcontraRRF0
Basomedial amygdaloid nucleuscontraBM0
Bed nucleus of the stria terminaliscontraBST0
Anterior cortical amygdaloid nucleuscontraACo0
Medial amygdaloid nucleuscontraMe0

Key for weights

ValueWeight
-3 unknown
-2 fibers of passage
-1 not clear
-0.5 exists
0 not present
0.5 very light
1 light / sparse
1.5 light / moderate
2 moderate / dense
2.5 moderate / strong
3 strong
4 very strong





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