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Rat connectome



Secondary visual cortex left


Abbreviation
V2
Color       
Superior regionsVisual association cortex

SynonymsAbbr.Language
Secondary visual cortexV2Eng
Prestriate cortex  
Peristriate area  
Occipital cortex area 2  
Posterior lateral dorsal cortex Eng
Occipital cortex area 2Oc2Eng
Prestriatal cortex Eng
Area 18 Eng

SubregionsSide
Secondary visual cortex anterior regionleft
Secondary visual cortex caudal partleft
Secondary visual cortex layersleft
Secondary visual cortex medial arealeft
Secondary visual cortex lateral arealeft
Secondary visual cortex rostral partleft
Secondary visual cortex middle partleft
Secondary visual cortex rostromedial partleft
Secondary visual cortex posterior partleft

Output to

NameSideAbbr.WeightDetails
Brachium pontis stem of middle cerebellar peduncleipsibp-2
Central gray mesencephalic part inferior colliculus levelipsiCGMinf-1
Central gray mesencephalic part superior colliculus levelipsiCGMsc-1
Superior colliculusipsiSC2.5
Dorsal part of superior colliculus intermediate white layeripsiDSAI3
Superior colliculus superficial layersipsiSCs-0.5
Intermediate gray layer of the superior colliculus ventral partipsiInGv-0.5
Intermediate white layer of the superior colliculus dorsal partipsiInWhD-0.5
Superior colliculus intermediate layers ventral partipsiVSCi3
Superior colliculus deep layersipsiSCd-0.5
Superior colliculus medial partipsimSC-0.5
PonsipsiP-0.5
Lateral ponsipsiLaP3
Pons ventral partipsiPve3
Pontine nucleiipsiPn2
Pontine nuclei rostral partipsiBPNr2
Deep mesencephalic nucleusipsiDpMe0
Medulla oblongataipsiMeOb-0.5
Dorsal raphe nucleusipsiDR-0.5
Medial raphe nucleusipsiMeR-0.5
Nucleus of the horizontal limb of the diagonal bandipsiHDB2
Substantia innominataipsiSI2
Posterior hypothalamic nucleusipsiPH1
Dorsal thalamusipsiDOR-0.5
Posterior thalamic nuclear groupipsiPo-0.5
Lateral part of posterior thalamic nuclear groupipsiPoLa2
Submedius thalamic nucleusipsiSub-0.5
Ventral posterolateral thalamic nucleusipsiVPL-0.5
Lateral posterior thalamic nucleusipsiLP3
Caudomedial lateral posterior thalamic nucleusipsiLPcm0.5
Lateral posterior thalamic nucleus lateral partipsiLPTL-0.5
Lateral posterior thalamic nucleus laterorostral partipsiLPLR0.5
Lateral posterior thalamic nucleus ventral part of the lateral partipsiLPTvL3
Lateral posterior thalamic nucleus medial partipsiLPM-0.5
Lateral posterior thalamic nucleus ventromedial portion of the mediorostral partipsiLPMRvm-0.5
Rostromedial lateral posterior thalamic nucleusipsiLPrm0.5
Laterodorsal thalamic nucleusipsiLD3
Laterodorsal thalamic nucleus lateral partipsiLDL-0.5
Laterodorsal thalamic nucleus medial partipsiLDm-0.5
Reticular thalamic nucleus visual sectoripsiRtvi2
Zona incertaipsiZI1
Nucleus of the optic tractipsiOT0.5
Dorsal part of the crus cerebriipsidcp-2
Dorsolateral cerebral peduncle basal partipsicpdLa-2
Basal nucleus magnocellular partipsiBmc-1
Lateral nucleus dorsal partipsiLAd-1
Central amygdaloid nucleus lateral divisionipsiCeL-1
ClaustrumipsiCl3
Ventral part of claustrumipsiVCl4
Caudate putamenipsiCPu-0.5
Dorsomedial striatum dorso-caudal partipsiCPudmdc3
Caudal striatumipsiCPuc0
Dorsal half of the striatumipsiCPudh-0.5
Rostroventral striatumipsiCPurv1
Dorsal region of the rostrocaudal intermediate caudate putamenipsiCPurdcim3
Tail of the striatumipsiCPuTa-0.5
Subthalamic nucleusipsiSTh0.5
Retrosplenial agranular cortexipsiRSA0.5
Anterior cingulate cortexipsiACC2
Posterior cingulate cortexipsiPCC-0.5
Parietal cortex posterior areaipsiParP2
Perirhinal cortex upper partipsiPRhu-0.5
Medial prefrontal cortexipsimPFC-0.5
Medial agranular prefrontal cortexipsiAGm3
Sensory regionsipsiSR-1
Primary somatosensory cortex barrel fieldipsiS1BF3
Primary somatosensory cortex forelimb regionipsiS1FL0
Area 17 area 18b border regionipsiVR1B2R2
Primary visual cortexipsiV12
Primary visual cortex lateral partipsiV1La-0.5
Primary visual cortex medial partipsiV1Med-0.5
Secondary visual cortex medial areaipsiV2M2
Secondary visual cortex lateral areaipsiV2L3
Extrastriate cortex 18aipsiExCx18a-0.5
Dorsal geniculate nucleus lateral partipsiDLGl3
Medial geniculate nucleusipsiMG-0.5
Zona incertacontraZI0
Dorsal region of the rostrocaudal intermediate caudate putamencontraCPurdcim2
Anterior cingulate cortexcontraACC1
Medial agranular prefrontal cortexcontraAGm2
Sensory regionscontraSR-0.5
Primary somatosensory cortex barrel fieldcontraS1BF0
Primary somatosensory cortex forelimb regioncontraS1FL0
Secondary somatosensory cortex ventral halfcontraS2vh3
Primary visual cortexcontraV13
Secondary visual cortexcontraV2-0.5
Secondary visual cortex lateral areacontraV2L-0.5
Spinal cord layer 5 C1contraSCL5C10.5
Spinal cord layer 6 C1contraSCL6C10.5
Spinal cord layer 3 C1contraSCL3C10.5
Spinal cord layer 4 C1contraSCL4C10.5
Spinal cord layer 5 C2contraSCL5C20.5
Spinal cord layer 6 C2contraSCL6C20.5
Spinal cord layer 3 C2contraSCL3C20.5
Spinal cord layer 4 C2contraSCL4C20.5
Spinal cord layer 5 C3contraSCL5C30.5
Spinal cord layer 6 C3contraSCL6C30.5
Spinal cord layer 3 C3contraSCL3C30.5
Spinal cord layer 4 C3contraSCL4C30.5
Spinal cord layer 5 C4contraSCL5C40.5
Spinal cord layer 6 C4contraSCL6C40.5
Spinal cord layer 3 C4contraSCL3C40.5
Spinal cord layer 4 C4contraSCL4C40.5
Cervical segment 5contraCS51
Spinal cord layer 5 C5contraSCL5C50.5
Spinal cord layer 6 C5contraSCL6C50.5
Spinal cord layer 3 C5contraSCL3C50.5
Spinal cord layer 4 C5contraSCL4C50.5
Cervical segment 6contraCS61
Spinal cord layer 5 C6contraSCL5C60.5
Spinal cord layer 6 C6contraSCL6C60.5
Spinal cord layer 3 C6contraSCL3C60.5
Spinal cord layer 4 C6contraSCL4C60.5
Spinal cord layer 5 C7contraSCL5C70.5
Spinal cord layer 6 C7contraSCL6C70.5
Spinal cord layer 3 C7contraSCL3C70.5
Spinal cord layer 4 C7contraSCL4C70.5
Spinal cord layer 5 C8contraSCL5C80.5
Spinal cord layer 6 C8contraSCL6C80.5
Spinal cord layer 3 C8contraSCL3C80.5
Spinal cord layer 4 C8contraSCL4C80.5
Spinal cord layer 5 T1contraSCL5T10.5
Spinal cord layer 6 T1contraSCL6T10.5
Spinal cord layer 3 T1contraSCL3T10.5
Spinal cord layer 4 T1contraSCL4T10.5
Spinal cord layer 5 T2contraSCL5T20.5
Spinal cord layer 6 T2contraSCL6T20.5
Spinal cord layer 3 T2contraSCL3T20.5
Spinal cord layer 4 T2contraSCL4T20.5
Spinal cord layer 5 T3contraSCL5T30.5
Spinal cord layer 6 T3contraSCL6T30.5
Spinal cord layer 3 T3contraSCL3T30.5
Spinal cord layer 4 T3contraSCL4T30.5
Spinal cord layer 5 T4contraSCL5T40.5
Spinal cord layer 6 T4contraSCL6T40.5
Spinal cord layer 3 T4contraSCL3T40.5
Spinal cord layer 4 T4contraSCL4T40.5
Spinal cord layer 5 T5contraSCL5T50.5
Spinal cord layer 6 T5contraSCL6T50.5
Spinal cord layer 3 T5contraSCL3T50.5
Spinal cord layer 4 T5contraSCL4T50.5
Spinal cord layer 5 T6contraSCL5T60.5
Spinal cord layer 6 T6contraSCL6T60.5
Spinal cord layer 3 T6contraSCL3T60.5
Spinal cord layer 4 T6contraSCL4T60.5
Spinal cord layer 5 T7contraSCL5T70.5
Spinal cord layer 6 T7contraSCL6T70.5
Spinal cord layer 3 T7contraSCL3T70.5
Spinal cord layer 4 T7contraSCL4T70.5
Spinal cord layer 5 T8contraSCL5T80.5
Spinal cord layer 6 T8contraSCL6T80.5
Spinal cord layer 3 T8contraSCL3T80.5
Spinal cord layer 4 T8contraSCL4T80.5
Spinal cord layer 5 T9contraSCL5T90.5
Spinal cord layer 6 T9contraSCL6T90.5
Spinal cord layer 3 T9contraSCL3T90.5
Spinal cord layer 4 T9contraSCL4T90.5
Spinal cord layer 5 T10contraSCL5T100.5
Spinal cord layer 6 T10contraSCL6T100.5
Spinal cord layer 3 T10contraSCL3T100.5
Spinal cord layer 4 T10contraSCL4T100.5
Spinal cord layer 5 T11contraSCL5T110.5
Spinal cord layer 6 T11contraSCL6T110.5
Spinal cord layer 3 T11contraSCL3T110.5
Spinal cord layer 4 T11contraSCL4T110.5
Spinal cord layer 5 T12contraSCL5T120.5
Spinal cord layer 6 T12contraSCL6T120.5
Spinal cord layer 3 T12contraSCL3T120.5
Spinal cord layer 4 T12contraSCL4T120.5
Spinal cord layer 5 T13contraSCL5T130.5
Spinal cord layer 6 T13contraSCL6T130.5
Spinal cord layer 3 T13contraSCL3T130.5
Spinal cord layer 4 T13contraSCL4T130.5
Spinal cord layer 5 L1contraSCL5L10.5
Spinal cord layer 6 L1contraSCL6L10.5
Spinal cord layer 3 L1contraSCL3L10.5
Spinal cord layer 4 L1contraSCL4L10.5
Spinal cord layer 5 L2contraSCL5L20.5
Spinal cord layer 6 L2contraSCL6L20.5
Spinal cord layer 3 L2contraSCL3L20.5
Spinal cord layer 4 L2contraSCL4L20.5
Spinal cord layer 5 L3contraSCL5L30.5
Spinal cord layer 6 L3contraSCL6L30.5
Spinal cord layer 3 L3contraSCL3L30.5
Spinal cord layer 4 L3contraSCL4L30.5
Spinal cord layer 5 L4contraSCL5L40.5
Spinal cord layer 6 L4contraSCL6L40.5
Spinal cord layer 3 L4contraSCL3L40.5
Spinal cord layer 4 L4contraSCL4L40.5
Spinal cord layer 5 L5contraSCL5L50.5
Spinal cord layer 6 L5contraSCL6L50.5
Spinal cord layer 3 L5contraSCL3L50.5
Spinal cord layer 4 L5contraSCL4L50.5
Spinal cord layer 5 L6contraSCL5L60.5
Spinal cord layer 6 L6contraSCL6L60.5
Spinal cord layer 3 L6contraSCL3L60.5
Spinal cord layer 4 L6contraSCL4L60.5
Spinal cord layer 5 S1contraSCL5S10.5
Spinal cord layer 6 S1contraSCL6S10.5
Spinal cord layer 3 S1contraSCL3S10.5
Spinal cord layer 4 S1contraSCL4S10.5
Spinal cord layer 5 S2contraSCL5S20.5
Spinal cord layer 6 S2contraSCL6S20.5
Spinal cord layer 3 S2contraSCL3S20.5
Spinal cord layer 4 S2contraSCL4S20.5
Spinal cord layer 5 S3contraSCL5S30.5
Spinal cord layer 6 S3contraSCL6S30.5
Spinal cord layer 3 S3contraSCL3S30.5
Spinal cord layer 4 S3contraSCL4S30.5
Spinal cord layer 5 S4contraSCL5S40.5
Spinal cord layer 6 S4contraSCL6S40.5
Spinal cord layer 3 S4contraSCL3S40.5
Spinal cord layer 4 S4contraSCL4S40.5

Input from

NameSideAbbr.WeightDetails
Superior colliculusipsiSC2
A4 noradrenaline cellsipsiA40.5
Locus coeruleus dorsal partipsiLCD3
Locus coeruleus ventral partipsiLCv-1
Locus coeruleus ventromedial partipsiVMLC0
Subcoeruleus nucleusipsiSubC0
Nucleus of the horizontal limb of the diagonal bandipsiHDB-0.5
Nucleus of the horizontal limb of the diagonal band medial partipsiHDBm2
Nucleus of the vertical limb of the diagonal band rostral partipsiVDBR2
Basal nucleus MeynertipsiB-0.5
Substantia innominataipsiSI1
Tuberomammillary nucleusipsiTuM-0.5
Lateral hypothalamic areaipsiLH1
Anterodorsal thalamic nucleusipsiAD3
Anteromedial thalamic nucleusipsiAM2
Anteroventral thalamic nucleusipsiAV3
Parafascicular thalamic nucleus lateral partipsiPFL1
Lateral group of the dorsal thalamusipsiLAT-0.5
Lateral group of the dorsal thalamus dorsolateral partipsiLATdL-0.5
Mediodorsal thalamic nucleusipsiMD-0.5
Mediodorsal thalamic nucleus central partipsiMDC-0.5
Mediodorsal thalamic nucleus lateral partipsiMDL0
Mediodorsal thalamic nucleus medial partipsiMDM0
Reuniens thalamic nucleusipsiRe-0.5
Afferent-dominant zone of the ventral anterior-lateral complex of the thalamusipsiADVAVL-0.5
Ventral posterior thalamic complexipsiVPT0
Dorsal ventrobasal complexipsiDVB3
Intralaminar nucleiipsiILN2
Lateral posterior thalamic nucleusipsiLP3
Caudomedial lateral posterior thalamic nucleusipsiLPcm2.5
Medial part of the mediocaudal part of the lateral posterior thalamic nucleusipsiLPcmm0
Lateral posterior thalamic nucleus lateral partipsiLPTL1.5
Lateral posterior thalamic nucleus laterorostral partipsiLPLR0.5
Medial part of the lateral posterior thalamic nucleus mediocaudal partipsiLPMCM0
Rostromedial lateral posterior thalamic nucleusipsiLPrm3
Laterodorsal thalamic nucleusipsiLD3
Posterior groupipsiPTG-0.5
Ventral medial nucleus of the thalamusipsiVMT-0.5
ClaustrumipsiCl3
Dorsolateral part of claustrumipsiCLDL1
Posterior part of the claustrumipsiClP3
Posteroventral part of the claustrumipsiClPV4
Ventral part of claustrumipsiVCl4
Caudal insular claustrumipsiciCl-0.5
Dorsolateral entorhinal cortexipsiDLEnt1
Dorsal intermediate entorhinal cortexipsiDIEnt-1
Caudal entorhinal field 1ipsiCEnt12
Anterior cingulate cortexipsiACC0
Posterior cingulate cortexipsiPCC2
Frontal cortex area 2ipsiFr2-1
Parietal association cortexipsiPtA2
Temporal association cortex 1ipsiTeA1.5
Insular cortex posterior part deep layersipsiICXpoLd-0.5
Perirhinal cortexipsiA35-1
Perirhinal cortex layer 5ipsiA35L5-0.5
Perirhinal cortex upper part of layer 6ipsiPRhL6u-0.5
Posteromedial barrel subfield vibrissae row DipsiPMBSFD3
Primary visual cortexipsiV12
Primary visual cortex layer 1ipsiV1L1-0.5
Primary visual cortex layer 2ipsiV1L2-0.5
Primary visual cortex layer 3ipsiV1L3-0.5
Primary visual cortex layer 4ipsiV1L4-0.5
Primary visual cortex layer 5ipsiV1L5-0.5
Primary visual cortex layer 6ipsiV1L6-0.5
Primary visual cortex layer 6 Martinotti cellsipsiV1L6CPmart-1
Secondary visual cortex lateral area layer 1ipsiV2LL1-0.5
Secondary visual cortex lateral area layer 2ipsiV2LL2-0.5
Secondary visual cortex lateral area layer 3ipsiV2LL3-0.5
Secondary visual cortex lateral area layer 5ipsiV2LL5-0.5
Secondary visual cortex lateral area layer 6ipsiV2LL6-0.5
Medial orbital cortexipsiMO2
Ventrolateral orbital areaipsiVLO3
Commissural systemsipsicos-2
Dorsal geniculate nucleus lateral partipsiDLGl2
Lateral geniculate complexipsiLG-0.5
Medial geniculate nucleusipsiMG0
ClaustrumcontraCl1
Posteroventral part of the claustrumcontraClPV1
Ventral part of claustrumcontraVCl1
Parietal association cortexcontraPtA1
Primary visual cortexcontraV13
Primary visual cortex layer 1contraV1L11
Primary visual cortex layer 1 Cajal Retzius cellscontraV1L1CPcr-0.5
Primary visual cortex layer 1 horizontal neuronscontraV1L1CPh-0.5
Primary visual cortex layer 2contraV1L23
Primary visual cortex layer 2 bitufted cellscontraV1L2CPbif-0.5
Primary visual cortex layer 3contraV1L33
Primary visual cortex layer 3 bitufted cellscontraV1L3CPbif-0.5
Primary visual cortex layer 4contraV1L43
Primary visual cortex layer 4 sparsely spiny multipolar neuronscontraV1L4CPssm-0.5
Primary visual cortex layer 5contraV1L53
Primary visual cortex layer 5 acontraV1L5a3
Primary visual cortex layer 5 bcontraV1L5b3
Primary visual cortex layer 5 bitufted cellscontraV1L5CPbif-0.5
Primary visual cortex layer 5 spine free neuronscontraV1L5CPsf-0.5
Primary visual cortex layer 6contraV1L63
Primary visual cortex layer 6 upper partcontraV1L6u3
Secondary visual cortexcontraV2-0.5
Secondary visual cortex layer 3 bitufted cellscontraV2L3CPbif-0.5
Secondary visual cortex layer 4 sparsely spiny multipolar neuronscontraV2L4CPssm-0.5
Secondary visual cortex layer 5 bitufted cellscontraV2L5CPbif-0.5
Secondary visual cortex layer 5 spine free neuronscontraV2L5CPsf-0.5
Secondary visual cortex layer 1 Cajal Retzius cellscontraV2L1CPcr-0.5
Secondary visual cortex layer 1 horizontal neuronscontraV2L1CPh-0.5
Secondary visual cortex layer 2 bitufted cellscontraV2L2CPbif-0.5
Commissural systemscontracos-2

Key for weights

ValueWeight
-3 unknown
-2 fibers of passage
-1 not clear
-0.5 exists
0 not present
0.5 very light
1 light / sparse
1.5 light / moderate
2 moderate / dense
2.5 moderate / strong
3 strong
4 very strong





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