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Rat connectome



Medial habenular nucleus left


Abbreviation
MHb
Color       
Superior regionsHabenula

SynonymsAbbr.Language
 MH 
 MHabEng
Dorsal to the subcommissural nucleus Eng
Medial habenular nucleusMHbEng
Medial habenula  

SubregionsSide
Medial habenular nucleus caudal partleft
Medial habenular nucleus dorsal partleft
Medial habenular nucleus dorsolateral partleft
Medial habenular nucleus dorsomedial partleft
Medial habenular nucleus lateral partleft
Medial habenular nucleus medial partleft
Medial habenular nucleus rostral partleft
Medial habenular nucleus ventral partleft
Medial habenular nucleus ventrolateral partleft
Medial habenular nucleus ventromedial partleft
Medial habenular nucleus rostrocaudal partleft
Central subnucleus of the medial habenular nucleusleft
Medial habenular nucleus superior subnucleusleft

Output to

NameSideAbbr.WeightDetails
Central gray ventral areaipsiCGva0
Central gray mesencephalic part inferior colliculus levelipsiCGMinf0.5
Central gray mesencephalic part intercollicular levelipsiCGMint1
Nucleus of DarkschewitschipsiDk1
Oculomotor nucleusipsi30
Periaqueductal grayipsiPAG1
Dorsolateral periaqueductal grayipsiDLPAG0
Lateral periaqueductal grayipsiLPAG1
Periaqueductal gray medial partipsiPAGm1
Ventrolateral periaqueductal grayipsiVLPAG1
Red nucleusipsiR3
Superior colliculusipsiSC2
Tegmental areaipsiTGA1
Substantia nigra A9ipsiSN0
Substantia nigra compact partipsiSNC2
Substantia nigra reticular partipsiSNR0
Ventral tegmental area A10ipsiVTA3
Ventral tegmental area A10 caudal partipsiVTAcp0.5
Interfascicular nucleusipsiIF3
Ventral tegmental area rostral partipsiVTAR0.5
Caudal linear nucleus of the rapheipsiCLi0
Middle part of the retrorubral fieldipsiRRmi0
Lateral tegmental nucleusipsiLTN-0.5
Laterodorsal tegmental nucleusipsiLDTg3
Dorsal tegmental nucleus ventromedial partipsiDTgVM2
Pedunculopontine tegmental nucleusipsiPPTg-1
Pedunculopontine tegmental nucleus pars compactaipsiPPNC3
Edinger Westphal nucleusipsiEW2
Pontine grayipsiPG2
Reticular systemipsiRF0
Mesencephalic reticular formationipsiMRF0
MyelencephalonipsiMYC3
CochleaipsiCO2.5
Dorsal cochlear nucleusipsiDC3
Raphe nucleiipsiRAN0
Dorsal raphe nucleusipsiDR2
Median raphe nucleusipsiMnR2
Medial raphe nucleusipsiMeR-0.5
Paramedian raphe nucleusipsiPMnR1
Diagonal band of BrocaipsiDBB1.5
Nucleus of the vertical limb of the diagonal bandipsiVDB3
Medial septal nucleusipsiMS3
Medial preoptic areaipsiMPA-0.5
Lateral hypothalamic area [Lateral zone tuberal level]ipsiLHtu0.5
Lateral hypothalamic area at the level of the caudal half to the ventromedial hypothalamic nucleusipsiLHAaCVMH0
Medial division of the hypothalamusipsiMdH1
Dorsal hypothalamic areaipsiDA2
Ventromedial hypothalamic nucleusipsiVMH1.5
Mediobasal hypothalamus posterior partipsiMeHypoP0.5
Arcuate nucleusipsiArc1.5
Suprachiasmatic nucleusipsiSCh2
Supraoptic nucleus dorsal partipsiSOd-0.5
Supramammillar nucleusipsiSuM0
A8 dopamine cells retrorubral groupipsiRRF1.5
A8 dopamine cells retrorubral group lateral partipsiRRFL0
A8 dopamine cells retrorubral group medial partipsiRRFm0
Parafascicular thalamic nucleusipsiPF0
Mediodorsal thalamic nucleus lateral partipsiMDL-10
Reuniens thalamic nucleusipsiRe1.5
Reticular thalamic nucleus medial partipsiRtm2
Reticular thalamic nucleus ventral partipsiRtV2
Subparafascicular thalamic nucleus caudal partipsiSPFc1
Zona incertaipsiZI2
Tuber cinereum areaipsiTC1.5
Lateral habenular nucleusipsiLHb-2
Pineal glandipsiPi3
Posterior lobe of pituitaryipsiPPit0
Medial forebrain bundleipsimfb1
Medial lemniscusipsiml3
Bed nucleus of the stria terminalis medial divisionipsiBSTM-0.5
Bed nucleus of the stria terminalis dorsal nucleusipsiBSTd-0.5
Medial amygdaloid nucleusipsiMe0.5
Subthalamic nucleusipsiSTh2
Dorsal hippocampus dentate gyrusipsiDDG3
Ventral hippocampus dentate gyrusipsiVDG3
Retrosplenial agranular cortexipsiRSA2
Anterior cingulate cortexipsiACC-0.5
Frontal cortex area 2ipsiFr2-0.5
Agranular insular cortex dorsal partipsiAID-0.5
Agranular insular cortex layer 3ipsiAIL3-0.5
Agranular insular cortex ventral part layer 3ipsiAIVL3-0.5
Somatomotoric regionsipsiSMR-0.5
Lateral orbital cortex caudal partipsiLOc-0.5
Lateral orbital cortex rostral partipsiLOr-0.5
Medial orbital cortexipsiMO-0.5
Ventral orbital cortexipsiVO-0.5
Ventrolateral orbital areaipsiVLO-0.5
Interpeduncular nucleusipsiIP4
Interpeduncular nucleus apical subnucleusipsiIPA2.5
Rostroventral part of the apical interpeduncular nucleusipsiIPArv2
Interpeduncular nucleus caudal subnucleusipsiIPC2.5
Ventral part of the caudal interpeduncular nucleusipsiIPCv2
Interpeduncular nucleus central subnucleusipsiIPRc3
Interpeduncular nucleus dorsal subnucleusipsiIPRd2.5
Interpeduncular nucleus dorsolateral partipsiIPRdL-0.5
Interpeduncular nucleus inner posterioripsiIPIP2
Interpeduncular nucleus intermediate subnucleusipsiIPI2.5
Interpeduncular nucleus lateral subnucleusipsiIPL3
Interpeduncular nucleus lateral subnucleus caudal partipsiIPLc2
Intermediate lateral half of the caudal part of the lateral interpeduncular nucleusipsiIPLcimL-0.5
Interpeduncular nucleus paramedian partipsiIPPM3
Interpeduncular nucleus rostral subnucleusipsiIPR1
Caudalmost part of the rostral interpeduncular nucleusipsiIPRcm2
Interpeduncular nucleus rostral subnucleus central partipsiIPRce3
Interpeduncular nucleus rostrolateral subnucleusipsiIPRL0.5
Interpeduncular nucleus perivascular zoneipsiIPpz1
Lateral septal nucleusipsiLS-0.5
Lateral septal nucleus intermediate partipsiLSI1.5
Septofimbrial nucleusipsiSFi2
Triangular septal nucleusipsiTS3
3d ventricleipsi3V-0.5
Periaqueductal graycontraPAG1
Dorsolateral periaqueductal graycontraDLPAG0
Lateral periaqueductal graycontraLPAG1
Periaqueductal gray medial partcontraPAGm1
Ventrolateral periaqueductal graycontraVLPAG2
Red nucleuscontraR0
Ventral tegmental area A10contraVTA-0.5
Lateral tegmental nucleuscontraLTN-0.5
Laterodorsal tegmental nucleuscontraLDTg1
CochleacontraCO2
Dorsal cochlear nucleuscontraDC3
Median raphe nucleuscontraMnR2
Diagonal band of BrocacontraDBB0
Dorsal hypothalamic areacontraDA0
Ventromedial hypothalamic nucleuscontraVMH0
Arcuate nucleuscontraArc1
A8 dopamine cells retrorubral groupcontraRRF0
Reuniens thalamic nucleuscontraRe0.5
Reticular thalamic nucleus ventral partcontraRtV1
Subparafascicular thalamic nucleus caudal partcontraSPFc0.5
Zona incertacontraZI0
Tuber cinereum areacontraTC0
Pineal glandcontraPi3
Medial forebrain bundlecontramfb0
RetinacontraRET-0.5
Medial amygdaloid nucleuscontraMe0
Interpeduncular nucleuscontraIP-0.5
Interpeduncular nucleus apical subnucleuscontraIPA2.5
Interpeduncular nucleus caudal subnucleuscontraIPC2.5
Interpeduncular nucleus central subnucleuscontraIPRc3
Interpeduncular nucleus dorsal subnucleuscontraIPRd2.5
Interpeduncular nucleus dorsolateral partcontraIPRdL0.5
Interpeduncular nucleus inner posteriorcontraIPIP2
Interpeduncular nucleus intermediate subnucleuscontraIPI2.5
Interpeduncular nucleus lateral subnucleuscontraIPL2.5
Interpeduncular nucleus paramedian partcontraIPPM1
Interpeduncular nucleus rostral subnucleus central partcontraIPRce-0.5
Interpeduncular nucleus rostrolateral subnucleuscontraIPRL-0.5
Interpeduncular nucleus perivascular zonecontraIPpz1
Lateral septal nucleus intermediate partcontraLSI0
Septofimbrial nucleuscontraSFi1.5
Triangular septal nucleuscontraTS0.5

Input from

NameSideAbbr.WeightDetails
Central gray lateral partipsiCGL0
Ventral periaqueductal grayipsiVPAG0
Ventrolateral periaqueductal grayipsiVLPAG1
Periventricular gray matteripsiPVG0
Ventral tegmental area A10ipsiVTA4
Interfascicular nucleusipsiIF-0.5
Dorsal tegmental nucleusipsiDTg0
Locus coeruleusipsiLC1
Nucleus incertus pars compactaipsiNIc1
MyelencephalonipsiMYC2
Dorsal raphe nucleusipsiDR2
Dorsal raphe nucleus caudal partipsiDRC-2
Median raphe nucleusipsiMnR2
Superior central raphe nucleusipsiCS2
Paramedian raphe nucleusipsiPMnR0.5
Pontine raphe nucleusipsiPnR0
Raphe magnus nucleusipsiRMg0
Basal forebrainipsiBAF1
Diagonal band of BrocaipsiDBB1
Nucleus of the horizontal limb of the diagonal bandipsiHDB-0.5
Lateral part of the nucleus of the horizontal limb of the diagonal bandipsiLPHDB0
Nucleus of the vertical limb of the diagonal bandipsiVDB2
Nucleus of the vertical limb of the diagonal band lateral partipsiVDBL2
Medial septal nucleusipsiMS1
Medial septal nucleus medial partipsiMSm-0.5
Dorsal caudal medial septal nucleusipsiDCMS2
Basal nucleus MeynertipsiB1
Substantia innominataipsiSI1
Lateral preoptic areaipsiLPO2
Medial preoptic areaipsiMPA2
Medial preoptic area dorsolateral partipsiMPADL0
Median preoptic nucleusipsiMnPO2
Ventrolateral preoptic nucleusipsiVLPO1
Dorsomedial preoptic regionipsidmPREO1
Parvocellular hypothalamic supracommissural nucleusipsiPHSN3
Lateral hypothalamic area anterior part [Preoptic anterior region]ipsiLHAapar1
Lateral hypothalamic area posterior part [Preoptic anterior region]ipsiLHApPAR1
Lateral hypothalamic area premammillary subfornical region [Preoptic anterior region]ipsiLHAsfp0
Lateral zoneipsiLHA0
Lateral hypothalamic areaipsiLH1
Lateral hypothalamic area motor related juxtaventromedial regionipsiLHAjvm0
Lateral hypothalamic area subfornical region anterior zoneipsiLHAsfa0
Lateral hypothalamic area perifornical partipsiPFx0.5
Lateral hypothalamic area rostral partipsiLHro-0.5
Anteroventral periventricular nucleus [Anterior hypothalamic area]ipsiAVPe1
Anterior hypothalamic nucleusipsiAHn-2
Dorsomedial hypothalamic nucleus [Medial zone]ipsiDM2
Dorsomedial hypothalamic nucleus dorsomedial partipsiDMDM0
Posterior hypothalamic areaipsiPHA0.5
Posterior hypothalamic nucleus caudal partipsiPHCa0
Posterior hypothalamic nucleus rostral partipsiPHRo0
Ventromedial hypothalamic nucleusipsiVMH2
Ventromedial hypothalamic nucleus central partipsiVMHC3
Ventromedial hypothalamic nucleus ventrolateral partipsiVMHVL3
Arcuate nucleusipsiArc2
Paraventricular hypothalamic nucleus medial parvicellular part [Periventricular zone anterior region]ipsiPaMP-0.5
Periventricular hypothalamic nucleusipsiPe2
Supramammillar nucleus lateral part lateral subpartipsiSuMLL0
Supramammillar nucleus lateral part medial subpartipsiSuMLM0
Supramammillar nucleus medial partipsiSuMM0
Subfornical organipsiSFO3
Reticular thalamic nucleusipsiRt1
Subparafascicular thalamic nucleusipsiSPF0
Subparafascicular thalamic nucleus rostral partipsiSPFr0
Pineal gland rostral partipsiPiR1
Tip of the internal capsuleipsitic0
Basolateral amygdaloid nucleusipsiBL-0.5
Bed nucleus of the stria terminalisipsiBST-0.5
Bed nucleus of the stria terminalis medial divisionipsiBSTM-0.5
Bed nucleus of the stria terminalis posterior divisionipsiBSTP-0.5
Bed nucleus of the stria terminalis ventral tipipsiBNSTvt0
Anterior amygdaloid areaipsiAA1
Medial amygdaloid nucleusipsiMe1
Medial globus pallidusipsiMGP-0.5
Ventral pallidumipsiVP1
Accumbens nucleusipsiAc1
Accumbens nucleus anteromedial partipsiAcAM1
Medial accumbensipsiAcbM0
Subthalamic nucleusipsiSTh1
Bed nucleus of the anterior commissureipsiBAC3
Ventral hippocampal commissureipsivhc3
Lateral entorhinal cortexipsiLEnt1
Anterior cingulate cortexipsiACC0
Prelimbic cortexipsiPrL0
Infralimbic cortexipsiIL0
Medial agranular prefrontal cortexipsiAGm0
Interpeduncular nucleusipsiIP3
Interpeduncular nucleus central subnucleusipsiIPRc3
Interpeduncular nucleus dorsolateral partipsiIPRdL1
Interpeduncular nucleus intermediate subnucleusipsiIPI3
Interpeduncular nucleus lateral subnucleusipsiIPL3
Interpeduncular nucleus rostral subnucleusipsiIPR2.5
Interpeduncular nucleus dorsomedial partipsiIPdm3
Septal regionipsiSER3
Dorsal medial septumipsiDMS0
Dorsolateral septumipsiDLSER0
Lateral septal nucleus caudal part dorsal zoneipsiLScd3
Lateral septal nucleus most caudal aspectipsiLSmca3
Lateral septal nucleus dorsal partipsiLSD1
Lateral septal nucleus dorsomedial tip of the intermediate partipsiLSdmI1
Lateral septal nucleus ventral partipsiLSV1
Posterior septal complexipsiPSC2.5
Septofimbrial nucleusipsiSFi4
Triangular septal nucleusipsiTS4
Triangular septal nucleus middle partipsiTSmi-0.5
Ventral triangular septal nucleusipsiVTS2
Triangular septal nucleus dorsal halfipsiTSdh3
Supracommissural septumipsiSCSep-0.5
Ventral medial septumipsiVMSe3
Ventrolateral septal regionipsiVLSER0
Central gray lateral partcontraCGL0
Ventral tegmental area A10contraVTA4
Locus coeruleuscontraLC2
Neuropil of dorsal raphe nucleuscontraDRnp-0.5
Nucleus of the horizontal limb of the diagonal bandcontraHDB-0.5
Basal nucleus MeynertcontraB1
Lateral preoptic areacontraLPO-0.5
Lateral hypothalamic area rostral partcontraLHro-0.5
Anteroventral periventricular nucleus [Anterior hypothalamic area]contraAVPe0.5
Ventromedial hypothalamic nucleus central partcontraVMHC0
Ventromedial hypothalamic nucleus ventrolateral partcontraVMHVL0
Stria medullaris of the thalamuscontrasm-0.5
Bed nucleus of the stria terminalis posterior divisioncontraBSTP-0.5
Medial globus palliduscontraMGP-0.5
Interpeduncular nucleuscontraIP2
Interpeduncular nucleus lateral subnucleuscontraIPL2
Posterior septal complexcontraPSC2.5
Septofimbrial nucleuscontraSFi0.5
Triangular septal nucleuscontraTS0.5
Trachea sideipsiOrgsTras2

Key for weights

ValueWeight
-3 unknown
-2 fibers of passage
-1 not clear
-0.5 exists
0 not present
0.5 very light
1 light / sparse
1.5 light / moderate
2 moderate / dense
2.5 moderate / strong
3 strong
4 very strong





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