University of Rostock

Department of Anatomy

Neuroscience Group

 Homepage

 Staff

 neuroVIISAS

 Rat connectome

 Other connectomes

 Neuroimaging

 Neurodegeneration

 Neuroproteomics

 Students

 Links

 Publications

Rat connectome



Primary visual cortex layer 6 right


Abbreviation
V1L6
Color       
Superior regionsPrimary visual cortex deep layers

SynonymsAbbr.Language
Primary visual cortex layer 6V1L6 

SubregionsSide
Middle layer of primary visual cortex layer 6right
Primary visual cortex layer 6 cell populationsright
Primary visual cortex layer 6 lower partright
Primary visual cortex layer 6 upper partright

Output to

NameSideAbbr.WeightDetails
Visual regionscontraVR3
Area 17 area 18 border regioncontraVR1B23
Area 17 area 18a border regioncontraVR1B2a3
Area 17 area 18a border region layer 5contraVR1B2aL53
Area 17 area 18a border region layer 6contraVR1B2aL63
Primary visual cortexcontraV13
Primary visual cortex layer 1contraV1L11
Primary visual cortex layer 2contraV1L21
Primary visual cortex layer 3contraV1L31
Primary visual cortex layer 4contraV1L41
Primary visual cortex deep layerscontraV1dL3
Primary visual cortex layer 5contraV1L53
Primary visual cortex layer 6contraV1L63
Secondary visual cortexcontraV23
Secondary visual cortex medial area deep gray matter layerscontraV2MdL1
Secondary visual cortex lateral areacontraV2L3
Secondary visual cortex lateral area infragranular layerscontraV2LigL1
Superior colliculus superficial layersipsiSCs3
Supericial layers of the rostromedial superior colliculusipsiSCsRML-0.5
ThalamusipsiT3
Anterior group of the dorsal thalamusipsiATN3
Dorsal part of the lateral geniculate complexipsiLGd-0.5
Ventrolateral thalamic nucleusipsiVL3
Ventrobasal complexipsiVB3
Ventrobasal complex posterior partipsiVBp3
Lateral posterior thalamic nucleusipsiLP3
Lateral posterior thalamic nucleus caudal partipsiLPca2
ClaustrumipsiCl1
Dorsomedial striatumipsiCPudm1
Tail of the striatumipsiCPuTa-0.5
Frontal association cortexipsiFrA1
Frontal cortex area 1ipsiFr10.5
Frontal cortex area 2ipsiFr20.5
Parietal cortex posterior areaipsiParP1.5
Area 17 area 18 border regionipsiVR1B21.5
Area 17 area 18a border regionipsiVR1B2a3
Primary visual cortexipsiV13
Primary visual cortex lateral partipsiV1La-2
Primary visual cortex deeper half of layers 2 3ipsiV1L23d3
Primary visual cortex layer 1ipsiV1L13
Primary visual cortex layer 2ipsiV1L23
Primary visual cortex layer 3 4 borderipsiV1L341
Primary visual cortex layer 3ipsiV1L33
Primary visual cortex layer 4ipsiV1L43
Primary visual cortex deep layersipsiV1dL3
Primary visual cortex layer 5ipsiV1L53
Middle layer of primary visual cortexipsiV1L5m2
Primary visual cortex layer 5 aipsiV1L5a-1
Top layer 5 of the primary visual cortexipsiV1L5aT2
Primary visual cortex layer 5 bipsiV1L5b1
Bottom layer of primary visual cortexipsiV1L5bB2
Primary visual cortex layer 6ipsiV1L63
Middle layer of primary visual cortex layer 6ipsiV1L6m3
Primary visual cortex layer 6 lower partipsiV1L6L3
Primary visual cortex layer 6 upper partipsiV1L6u3
Primary visual cortex superficial layer 2 3ipsiV1L23s1
Secondary visual cortexipsiV2-0.5
Secondary visual cortex medial areaipsiV2M3
Secondary visual cortex medial area deep gray matter layersipsiV2MdL3
Secondary visual cortex lateral areaipsiV2L3
Lateromedial area of subdivision 18a in lateral extrastriate cortex layers layer 1ipsiLMV2LL13
Lateromedial area of subdivision 18a in lateral extrastriate cortex layers layer 2ipsiLMV2LL23
Lateromedial area of subdivision 18a in lateral extrastriate cortex layers layer 3ipsiLMV2LL33
Lateromedial area of subdivision 18a in lateral extrastriate cortex layers layer 4ipsiLMV2LL43
Lateromedial area of subdivision 18a in lateral extrastriate cortex layers layer 5ipsiLMV2LL50.5
Lateromedial area of subdivision 18a in lateral extrastriate cortex layers layer 6ipsiLMV2LL63
Secondary visual cortex lateral area supragranular layersipsiV2LsgL1
Secondary visual cortex lateral area infragranular layersipsiV2LigL3
Primary visual cortex monocular areaipsiV1M-2
Anterolateral extrastriate cortexipsiALExCx3
Posterior lateral extrastriate cortexipsiVISPX3
Lateromedial part of the lateral extrastriate cortex layer 5ipsiVISLLML50.5
Lateromedial part of the lateral extrastriate cortex layer 6ipsiVISLLML63
Lateromedial part of the lateral extrastriate cortex layer 3ipsiVISLLML33
Lateromedial part of the lateral extrastriate cortex layer 4ipsiVISLLML43
Lateromedial part of the lateral extrastriate cortex layer 1ipsiVISLLML13
Lateromedial part of the lateral extrastriate cortex layer 2ipsiVISLLML23
Lateromedial extrastriate cortexipsiLMExCx3
Posterior extrastriate cortexipsiPExCx3
Internal stratum of the white matter of the neocortexipsiNEOCXis-2
Dorsal geniculate nucleus lateral partipsiDLGl-0.5
Dorsal geniculate nucleus lateral part medial partipsiDLGLM3
Lateral geniculate complexipsiLG3
Dorsomedial tip of the dorsal part of the lateral geniculate complexipsiLGDdmt3
Medial geniculate nucleusipsiMG3

Input from

NameSideAbbr.WeightDetails
RetinacontraRET1.5
Frontal cortex area 2 layer 5contraFr2L50.5
Frontal cortex area 2 layer 6contraFr2L61
Temporal association cortex 1 layer 3contraTeAL31
Temporal association cortex 1 layer 2contraTeAL21
Area 17 area 18a border regioncontraVR1B2a3
Primary visual cortexcontraV12
Primary visual cortex layer 2contraV1L23
Primary visual cortex layer 3contraV1L33
Primary visual cortex layer 5contraV1L53
Primary visual cortex layer 6contraV1L63
Secondary visual cortex layer 3contraV2L30
Secondary visual cortex layer 2contraV2L20
Secondary visual cortex medial area layer 3contraV2ML30.5
Secondary visual cortex medial area layer 2contraV2ML20.5
Secondary visual cortex medial area layer 5contraV2ML51
Secondary visual cortex medial area layer 6contraV2ML61
Secondary visual cortex lateral area layer 2contraV2LL21
Secondary visual cortex lateral area layer 3contraV2LL31
Secondary visual cortex lateral area layer 6contraV2LL61.5
Superior colliculusipsiSC2
Basal forebrainipsiBAF3
Nucleus of the horizontal limb of the diagonal bandipsiHDB3
Genu of diagonal band of BrocaipsiGDBB2
Subpallidal substantia innominataipsiSIsp2
Magnocellular preoptic nucleus lateral partipsiMCPOL2
Dorsal part of the lateral geniculate complexipsiLGd3
Rhomboid thalamic nucleusipsiRh1
Lateral posterior thalamic nucleusipsiLP2
RetinaipsiRET1.5
ClaustrumipsiCl3
Globus pallidusipsiGP2
HippocampusipsiHIPP-0.5
Entorhinal cortexipsiEnt0.5
Lateral entorhinal cortexipsiLEnt1.5
Frontal cortex area 2ipsiFr22
Frontal cortex area 2 layer 5ipsiFr2L51
Frontal cortex area 2 layer 6ipsiFr2L62
Area 17 area 18b border region infragranular layersipsiVR1B2RifgL2
Primary visual cortexipsiV13
Primary visual cortex lateral partipsiV1La-2
Primary visual cortex layer 2ipsiV1L22.5
Primary visual cortex layer 3ipsiV1L32.5
Primary visual cortex layer 4ipsiV1L4-0.5
Primary visual cortex layer 5ipsiV1L53
Primary visual cortex layer 6ipsiV1L63
Primary visual cortex layer 6 lower partipsiV1L6L3
Primary visual cortex gray white border of layer 6ipsiV1L6Lgw-0.5
Primary visual cortex layer 6 upper partipsiV1L6u1
Primary visual cortex white matteripsiV1WM-2
Secondary visual cortex layer 3ipsiV2L30
Secondary visual cortex layer 2ipsiV2L20
Secondary visual cortex medial areaipsiV2M2
Secondary visual cortex medial area layer 3ipsiV2ML30
Secondary visual cortex medial area layer 2ipsiV2ML20
Secondary visual cortex medial area layer 5ipsiV2ML51.5
Secondary visual cortex medial area layer 6ipsiV2ML61.5
Secondary visual cortex medial area medial partipsiV2MMe-0.5
Secondary visual cortex anterior part of the medial area medial partipsiV2MMea-0.5
Secondary visual cortex lateral areaipsiV2L2
Anterolateral area of subdivision 18a in lateral extrastriate cortexipsiALV2L-0.5
Lateromedial area of subdivision 18a in lateral extrastriate cortexipsiLMV2L-0.5
Secondary visual cortex lateral area layer 2ipsiV2LL22
Secondary visual cortex lateral area layer 3ipsiV2LL32
Secondary visual cortex lateral area layer 6ipsiV2LL63
Primary visual cortex monocular areaipsiV1M-2
Far lateral extrastriate cortexipsiVISFL-0.5
Lateromedial part of the lateral extrastriate cortexipsiVISLLM3
Lateromedial extrastriate cortexipsiLMExCx1.5
Lateromedial extrastriate cortex layer 4ipsiLMExCxL43
Anterior part of the medial extrastriate cortexipsiVISMA3
Posterior part of the medial extrastriate cortexipsiVISMP3
Dorsal geniculate nucleus lateral partipsiDLGl-0.5
Lateral geniculate complexipsiLG2

Key for weights

ValueWeight
-3 unknown
-2 fibers of passage
-1 not clear
-0.5 exists
0 not present
0.5 very light
1 light / sparse
1.5 light / moderate
2 moderate / dense
2.5 moderate / strong
3 strong
4 very strong





Homepage | Staff | neuroVIISAS | Rat connectome | Other connectomes | Neuroimaging | Neurodegeneration | Students | Links | Publications