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Rat connectome



Spinal cord layer 3 C5 left


Abbreviation
SCL3C5
Color       
Superior regionsNucleus proprius C5

SynonymsAbbr.Language
Spinal cord layer 3 C5SCL3C5Eng

Output to

NameSideAbbr.WeightDetails
MesencephalonipsiMEC-0.5
Periaqueductal grayipsiPAG0.5
Lateral periaqueductal grayipsiLPAG1
Periaqueductal gray lateroventral partipsiPAGLV0.5
Cerebellar lobule 4ipsiCERL40
Cerebellar lobule 5ipsiCERL51
Cerebellar lobule 7ipsiCERL71
Cerebellar lobule 7aipsiCERL7a1
Cerebellar lobule 7bipsiCERL7b1
Cerebellar lobule 8ipsiCERL81
Cerebellar lobule 9ipsiCERL91
Cerebellar lobule 6ipsiCERL61
Cerebellar lobule 6aipsiCERL6a1
Cerebellar lobule 6bipsiCERL6b1
Cerebellar lobule 6cipsiCERL6c1
Cerebellar lobule 6dipsiCERL6d1
Pontine medullary junctionipsiPMJ-0.5
Lateral parabrachial nucleusipsiLPB0.5
Lateral parabrachial nucleus internal partipsiLPBI2
Lateral parabrachial nucleus lateral partipsiLPBL1
Parabrachial nucleus central lateral partipsiPBCeL0
Parabrachial nucleus dorsolateral partipsiPBDL0
Parabrachial nucleus superior lateralipsiPBSL0
Gigantocellular reticular nucleusipsiGi2
Lateral reticular nucleusipsiLRt3
Caudal part to the midportion of the lateral reticular nucleusipsiCaLRtMp2
Caudomedial part of the lateral reticular nucleusipsiLRtcm2
Caudal third of the caudomedial part of the lateral reticular nucleusipsiLRtcmCt2
Lateral reticular nucleus lateral partipsiLRtL3
Subnucleus reticularis dorsalisipsiSRD3
Medullary reticular nucleus dorsal partipsiMdDd3
Nucleus of the solitary tractipsiSol1
Nucleus of the solitary tract lateral partipsiSolL2
Caudal ventrolateral medullaipsiCVLM1
Caudal ventrolateral medulla lateral partipsiCVLMl3
Caudal dorsal reticular medulla oblongataipsiCDRMO-0.5
A1 noradrenergic cellsipsiA11
A2 noradrenergic cellsipsiA20.5
Dorsal column nucleiipsiDCN2
Cuneate nucleusipsiCu3
Gracile nucleus principal partipsiGr-0.5
Lateral paragigantocellular nucleusipsiLPGi2
Dorsal regionipsiDHR-0.5
Lateral hypothalamic areaipsiLH1.5
Medial division of the hypothalamusipsiMdH0.5
Dorsal hypothalamic areaipsiDA1.5
Dorsomedial hypothalamic nucleus [Medial zone]ipsiDM1.5
Posterior hypothalamic areaipsiPHA-0.5
Paraventricular hypothalamic nucleusipsiPa1.5
Suprachiasmatic nucleusipsiSCh1.5
Supraoptic nucleus [Supraoptic region]ipsiSO1.5
ThalamusipsiT0.5
Posterior thalamic nuclear group triangular partipsiPoT0.5
Ventral posterior thalamic complexipsiVPT2
Ventrobasal complexipsiVB1
TelencephalonipsiTEL-0.5
Amygdaloid complexipsiAC-0.5
Basal gangliaipsiBG-0.5
Accumbens nucleusipsiAc1
Infralimbic cortexipsiIL-0.5
Medial orbital cortexipsiMO-0.5
Septal regionipsiSER1
Cervical segment 1ipsiCS13
Lateral cervical nucleus C1ipsiLatCC1-0.5
Cervical segment 2ipsiCS21
Lateral cervical nucleus C2ipsiLatCC2-0.5
Cervical segment 3ipsiCS31
Lateral cervical nucleus C3ipsiLatCC3-0.5
Interneuron groups of layer 9 C3ipsiiGL9C3-0.5
Motoneuron groups of layer 9 C3ipsiMGL9C3-0.5
Cervical segment 4ipsiCS41
Lateral cervical nucleus C4ipsiLatCC4-0.5
Interneuron groups of layer 9 C4ipsiiGL9C4-0.5
Motoneuron groups of layer 9 C4ipsiMGL9C4-0.5
Cervical segment 5ipsiCS51
Interneuron groups of layer 9 C5ipsiiGL9C5-0.5
Motoneuron groups of layer 9 C5ipsiMGL9C5-0.5
Cervical segment 6ipsiCS61
Interneuron groups of layer 9 C6ipsiiGL9C6-0.5
Motoneuron groups of layer 9 C6ipsiMGL9C6-0.5
Cervical segment 7ipsiCS71
Interneuron groups of layer 9 C7ipsiiGL9C7-0.5
Motoneuron groups of layer 9 C7ipsiMGL9C7-0.5
Cervical segment 8ipsiCS81
Thoracal segment 1ipsiT11
Thoracal segment 2ipsiT23
Spinal cord layers T2ipsiSCLT21
Thoracal segment 3ipsiT31
Thoracal segment 4ipsiT41
Thoracal segment 5ipsiT51
Thoracal segment 6ipsiT61
Thoracal segment 7ipsiT71
Thoracal segment 8ipsiT81
Thoracal segment 9ipsiT91
Thoracal segment 10ipsiT101
Thoracal segment 11ipsiT111
Thoracal segment 12ipsiT121
Thoracal segment 13ipsiT131
Lumbar segment 1ipsiL11
Lumbar segment 2ipsiL21
Lumbar segment 3ipsiL31
Lumbar segment 4ipsiL41
Lumbar segment 5ipsiL51
Spinal nucleus of the bulbocavernosus lumbal segment 5ipsiBCL50
Lumbar segment 6ipsiL61
Spinal nucleus of the bulbocavernosus lumbal segment 6ipsiBCL60
Sacral segment 1ipsiSa11
Sacral segment 2ipsiSa21
Sacral segment 3ipsiSa31
Sacral segment 4ipsiSa41
MesencephaloncontraMEC0.5
Nucleus of DarkschewitschcontraDk-0.5
Oculomotor nucleuscontra3-0.5
Periaqueductal graycontraPAG3
Periaqueductal gray dorsal partcontraPAGd1
Periaqueductal gray laterodorsal partcontraPAGLD1
Periaqueductal gray lateroventral partcontraPAGLV1
Intercollicular nucleuscontraInCo-0.5
Superior colliculuscontraSC-0.5
Superior colliculus intermediate layerscontraSCi-0.5
Superior colliculus deep layerscontraSCd-0.5
Edinger Westphal nucleuscontraEW-0.5
Interstitial nucleus of CajalcontraInC-0.5
Cerebellar lobule 4contraCERL40
Cerebellar lobule 5contraCERL51.5
Cerebellar lobule 7contraCERL71.5
Cerebellar lobule 7acontraCERL7a1.5
Cerebellar lobule 7bcontraCERL7b1.5
Cerebellar lobule 8contraCERL81.5
Cerebellar lobule 9contraCERL91.5
Cerebellar lobule 6contraCERL61.5
Cerebellar lobule 6acontraCERL6a1.5
Cerebellar lobule 6bcontraCERL6b1.5
Cerebellar lobule 6ccontraCERL6c1.5
Cerebellar lobule 6dcontraCERL6d1.5
Deep mesencephalic nucleuscontraDpMe1
Cuneiforme nucleuscontraCnF3
Lateral parabrachial nucleuscontraLPB3
Lateral parabrachial nucleus lateral partcontraLPBL1
Parabrachial nucleus central lateral partcontraPBCeL1
Parabrachial nucleus dorsolateral partcontraPBDL1
Parabrachial nucleus superior lateralcontraPBSL1
Lateral reticular nucleuscontraLRt3
Caudomedial part of the lateral reticular nucleuscontraLRtcm0.5
Lateral reticular nucleus lateral partcontraLRtL2
Subnucleus reticularis dorsaliscontraSRD0.5
Medullary reticular nucleus dorsal partcontraMdDd2
Nucleus of the solitary tractcontraSol3
Nucleus of the solitary tract lateral partcontraSolL0.5
Caudal ventrolateral medullacontraCVLM3
Caudal ventrolateral medulla lateral partcontraCVLMl2
A1 noradrenergic cellscontraA13
A2 noradrenergic cellscontraA22
Dorsal column nucleicontraDCN0.5
Cuneate nucleuscontraCu1
Lateral hypothalamic areacontraLH3
Medial division of the hypothalamuscontraMdH0.5
Dorsal hypothalamic areacontraDA3
Dorsomedial hypothalamic nucleus [Medial zone]contraDM3
Paraventricular hypothalamic nucleuscontraPa3
Suprachiasmatic nucleuscontraSCh3
Supraoptic nucleus [Supraoptic region]contraSO3
ThalamuscontraT3
Posterior thalamic nuclear groupcontraPo2
Medial part of posterior thalamic nuclear groupcontraPoM-0.5
Posterior thalamic nuclear group triangular partcontraPoT3
Mediodorsal thalamic nucleuscontraMD2
Ventral posterior thalamic complexcontraVPT3
Ventral posterolateral thalamic nucleus parvicellular partcontraVPLpc-0.5
Pretectal regioncontraPRT-0.5
Dorsolateral funiculuscontradlft-2
Lateral funiculuscontralf-2
Accumbens nucleuscontraAc2
Septal regioncontraSER2
Cervical segment 1contraCS11
Cervical segment 2contraCS21
Cervical segment 3contraCS31
Cervical segment 4contraCS41
Cervical segment 5contraCS51
Cervical segment 6contraCS61
Cervical segment 7contraCS71
Cervical segment 8contraCS81
Thoracal segment 1contraT11
Thoracal segment 2contraT21
Spinal cord layers T2contraSCLT22
Thoracal segment 3contraT31
Thoracal segment 4contraT41
Thoracal segment 5contraT51
Thoracal segment 6contraT61
Thoracal segment 7contraT71
Thoracal segment 8contraT81
Thoracal segment 9contraT91
Thoracal segment 10contraT101
Thoracal segment 11contraT111
Thoracal segment 12contraT121
Thoracal segment 13contraT131
Lumbar segment 1contraL11
Lumbar segment 2contraL21
Lumbar segment 3contraL31
Lumbar segment 4contraL41
Lumbar segment 5contraL51
Lumbar segment 6contraL61
Sacral segment 1contraSa11
Sacral segment 2contraSa21
Sacral segment 3contraSa31
Sacral segment 4contraSa41
Median nerveipsimen-0.5
Tibial nerveipsitibial-0.5
Ulnar nerveipsiuln-0.5

Input from

NameSideAbbr.WeightDetails
Central grayipsiCG1
Red nucleusipsiR2.5
Red nucleus caudal partipsiRnCa3
Red nucleus magnocellular partipsiRMC3
Red nucleus rostral partipsiRnRo3
Ventrolateral tegmental areaipsiVLTg2
Pedunculopontine tegmental nucleusipsiPPTg3
Interstitial nucleus of CajalipsiInC1.5
A4 noradrenaline cellsipsiA40
A5 noradrenaline cellsipsiA53
A7 noradrenaline cellsipsiA73
Locus coeruleusipsiLC3
Locus coeruleus ventral partipsiLCv1
Caudal part of ventral locus coeruleusipsiLCveca0.5
Parapyramidal nucleusipsiPPy3
Caudal ventromedial ponsipsiCVeMePn-0.5
Magnocellular reticular nucleusipsiNRMC-0.5
Rostroventrolateral reticular nucleusipsiRVL1
Ventral reticular formationipsiVRF2
Ventrolateral reticular formationipsiVLRF-0.5
Deep mesencephalic nucleusipsiDpMe-0.5
Dorsolateral pontine reticular formationipsiPRNDL1
Koelliker Fuse nucleusipsiKF2
Lateral parabrachial nucleusipsiLPB1
Parabrachial nucleus medialipsiPBnMe1
Gigantocellular reticular nucleusipsiGi1
Gigantocellular reticular nucleus alpha partipsiGiA-0.5
Medullary reticular nucleus dorsal partipsiMdDd4
Dorsal part of the medullary reticular nucleus dorsal partipsidMdDd4
Ventral part of the medullary reticular nucleus dorsal partipsivMdDd4
Medullary reticular nucleus ventral partipsiMdV4
Subcoeruleus nucleusipsiSubC3
C1 adrenaline cellsipsiC11
C2 adrenaline cellsipsiC21
Boetzinger complexipsiBo0
Spinal trigeminal nucleus caudal partipsiSp5C2
Vestibular nucleiipsiVnc1.5
Medial vestibular nucleus caudal partipsiMVeP3
Nucleus of the solitary tractipsiSol2
Nucleus of the solitary tract commissural partipsiSolC1
Raphe magnus nucleusipsiRMg3
Raphe obscurus nucleusipsiROb-0.5
Raphe pallidus nucleusipsiRPa3
Caudal ventrolateral medulla lateral partipsiCVLMl3
Lateral part of the caudal ventrolateral medullaipsiLCVLM1
Lateral most portion of the ventrolateral medullaipsiLMVL-0.5
A1 noradrenergic cellsipsiA11
A2 noradrenergic cellsipsiA21
Cuneate nucleusipsiCu1
Paragigantocellular reticular nucleusipsiPGi-0.5
Posteroventromedial medulla oblongataipsiMeObpvm-0.5
Rostral part of the ventromedial medulla oblongataipsiRMeObvm4
Lateral hypothalamic areaipsiLH2
Lateral hypothalamic area posterior partipsiLHAp3
Tuberal division of the lateral hypothalamic areaipsiLHTC3
Paraventricular hypothalamic nucleus dorsal partipsiPaD-0.5
Zona incerta rostromedial partipsiZIrm0
Somatomotoric regionsipsiSMR-0.5
Lateral agranular prefrontal cortexipsiAGl3
Medial agranular prefrontal cortexipsiAGm3
Primary somatosensory cortexipsiS13
Secondary somatosensory cortexipsiS23
Dorsal root ganglion C2ipsiDRGC2-0.5
Dorsal root ganglion C4ipsiDRGC4-0.5
Dorsal root ganglion C5ipsiDRGC5-0.5
Dorsal root ganglion C6ipsiDRGC6-0.5
Dorsal root ganglion C7ipsiDRGC7-0.5
Dorsal root ganglion C8ipsiDRGC8-0.5
Area X T1ipsiSCL10T1-0.5
Spinal cord layer 5 T1ipsiSCL5T1-0.5
Spinal cord layer 6 T1ipsiSCL6T1-0.5
Spinal cord layer 3 T1ipsiSCL3T1-0.5
Spinal cord layer 4 T1ipsiSCL4T1-0.5
Spinal cord layer 1 T1ipsiSCL1T1-0.5
Spinal cord layer 2 T1ipsiSCL2T1-0.5
Spinal cord layer 7 T1ipsiSCL7T1-0.5
Spinal cord layer 8 T1ipsiSCL8T1-0.5
Area X T2ipsiSCL10T2-0.5
Spinal cord layer 5 T2ipsiSCL5T2-0.5
Spinal cord layer 6 T2ipsiSCL6T2-0.5
Spinal cord layer 3 T2ipsiSCL3T2-0.5
Spinal cord layer 4 T2ipsiSCL4T2-0.5
Spinal cord layer 1 T2ipsiSCL1T2-0.5
Spinal cord layer 2 T2ipsiSCL2T2-0.5
Spinal cord layer 7 T2ipsiSCL7T2-0.5
Spinal cord layer 8 T2ipsiSCL8T2-0.5
Pedunculopontine tegmental nucleuscontraPPTg3
A4 noradrenaline cellscontraA40
A5 noradrenaline cellscontraA53
A7 noradrenaline cellscontraA73
Locus coeruleuscontraLC3
Locus coeruleus ventral partcontraLCv0.5
Caudal part of ventral locus coeruleuscontraLCveca0.5
Caudal ventromedial ponscontraCVeMePn-0.5
Magnocellular reticular nucleuscontraNRMC-0.5
Rostroventrolateral reticular nucleuscontraRVL-0.5
Cuneiforme nucleuscontraCnF-2
Gigantocellular reticular nucleus alpha partcontraGiA-0.5
Medullary reticular nucleus dorsal partcontraMdDd3
Dorsal part of the medullary reticular nucleus dorsal partcontradMdDd1
Ventral part of the medullary reticular nucleus dorsal partcontravMdDd3
Medullary reticular nucleus ventral partcontraMdV3
Subcoeruleus nucleuscontraSubC1
C1 adrenaline cellscontraC11
C2 adrenaline cellscontraC21
Spinal trigeminal nucleus caudal partcontraSp5C0
Vestibular nucleicontraVnc1.5
Medial vestibular nucleus caudal partcontraMVeP3
Nucleus of the solitary tractcontraSol2
Nucleus of the solitary tract commissural partcontraSolC-0.5
Raphe magnus nucleuscontraRMg-0.5
Raphe obscurus nucleuscontraROb-0.5
Raphe pallidus nucleuscontraRPa-0.5
Caudal ventrolateral medulla lateral partcontraCVLMl2
Lateral most portion of the ventrolateral medullacontraLMVL-0.5
A1 noradrenergic cellscontraA11
A2 noradrenergic cellscontraA21
Cuneate nucleuscontraCu0.5
Nucleus interfascicularis hypoglossicontraNIFH1
Paragigantocellular reticular nucleuscontraPGi-0.5
Posteroventromedial medulla oblongatacontraMeObpvm-0.5
Rostral part of the ventromedial medulla oblongatacontraRMeObvm4
Dorsolateral funiculuscontradlft-2
Cerebral cortexcontraCEC3
Frontal cortex area 2contraFr23
Parietal association cortexcontraPtA0.5
Insular cortexcontraICX0.5
Prefrontal cortexcontraPFC0.5
Lateral agranular prefrontal cortexcontraAGl3
Forelimb motor cortexcontraFMCx3
Lateral agranular prefrontal cortex layer 5contraAGlL5-0.5
Medial agranular prefrontal cortexcontraAGm-0.5
Medial agranular prefrontal cortex rostral partcontrarAGm-0.5
Medial agranular prefrontal cortex rostral part layer 5contrarAGmL5-0.5
Primary somatosensory cortexcontraS13
Primary somatosensory cortex layer 5contraS1L5-0.5
Secondary somatosensory cortexcontraS23
Secondary somatosensory cortex layer 5contraS2L5-0.5
Secondary visual cortexcontraV20.5
Greater occipital nerveipsiPNSgo-0.5
Median nerveipsimen3
Phrenic nerveipsiphren-0.5
Superficial cutaneous part of the radial nerveipsiradsc2
Ulnar nerveipsiuln-0.5
Forepaw digit 1ipsiOrgFLD13
Forepaw digit 2ipsiOrgFLD23
Forelimb extensor digitorum communisipsiMuscFoEDC2

Key for weights

ValueWeight
-3 unknown
-2 fibers of passage
-1 not clear
-0.5 exists
0 not present
0.5 very light
1 light / sparse
1.5 light / moderate
2 moderate / dense
2.5 moderate / strong
3 strong
4 very strong





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