University of Rostock

Department of Anatomy

Neuroscience Group

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Rat connectome



Thoracal segments left


Abbreviation
TSeg
Color       
Superior regionsSpinal segments

SynonymsAbbr.Language
Thoracal segmentsTSeg 
Thoracic segments of the spinal cord Eng
Thoracic spinal cordSCEng

SubregionsSide
Upper thoracic spinal cordleft
Mid thoracal segmentsleft
Lower thoracic spinal cordleft
Thoracic spinal cord dorsal root entry zoneleft
Thoracal segments layersleft
Thoracic intermediolateral cell columnleft
Thoracal segments dorsal hornleft
Intermediate lamina of the thoracic spinal cordleft
Thoracal segments ventral hornleft
Dorsolateral nucleus of thoracal segments Lleft
Ventrolateral nucleus of thoracal segmentsleft
Ventromedial nucleus of the thoracal segmentsleft
Thoracic lateral white matterleft
Thoracal column of Clarkleft
Thoracal segments dorsolateral quadrantleft
Ventrolateral aspects of the thoracal segmentsleft
Ventromedial aspects of the thoracal segmentsleft
Lateral portion of the white matter of the thoracal segmentsleft

Output to

NameSideAbbr.WeightDetails
Laterodorsal tegmental nucleusipsiLDTg1
Granule cell layer of the cerebellumipsiGrCb-0.5
Inferior oliveipsiIO1
Rostral part of the ventromedial medulla oblongataipsiRMeObvm1
Rostral part of the midline ventromedial medulla oblongataipsiRMeObvmi1
Dorsomedial hypothalamic nucleus [Medial zone]ipsiDM1
Zona incerta central partipsiZIce0
Zona incerta lateral partipsiZIL0
Lumbar segment 2ipsiL2-0.5
Lumbar segment 3ipsiL3-0.5
Lumbar segment 4ipsiL4-0.5
Inferior olivecontraIO2
Rostral part of the ventromedial medulla oblongatacontraRMeObvm2
Rostral part of the midline ventromedial medulla oblongatacontraRMeObvmi1
Zona incerta lateral partcontraZIL0
Zona incerta central partcontraZIce0
Superior cervical ganglionipsiAutoSCeG-0.5
Pelvic ganglionipsiAutoPeG0
Anterior cruciate ligamentipsiLigAntCru3
Triceps brachii muscleipsiMuscTriBra-0.5
Femoral bone marrowipsiOrgSkFemM3
Anterior cruciate ligamentcontraLigAntCru2
Femoral bone marrowcontraOrgSkFemM3

Input from

NameSideAbbr.WeightDetails
Nucleus of DarkschewitschipsiDk-0.5
Periaqueductal grayipsiPAG-0.5
Red nucleusipsiR2
Red nucleus caudal partipsiRnCa-0.5
Red nucleus ventral partipsiRV-0.5
Tegmental areaipsiTGA-0.5
Mesopontine tegmental area caudal partipsiTGAmc2
Mesopontine tegmental area rostral partipsiTGAmr1
Ventrolateral tegmental areaipsiVLTg4
Medullary tegmentumipsiTGM-0.5
Interstitial nucleus of CajalipsiInC3
A5 noradrenaline cellsipsiA5-0.5
Locus coeruleusipsiLC4
Reticulotegmental nucleus of the ponsipsiRtTg-0.5
Dorsomedial reticular formationipsiDMRF-0.5
Paramedian reticular nucleusipsiPMn-0.5
Gigantocellular reticular nucleus alpha partipsiGiA-0.5
Medullary reticular nucleusipsiMdD-0.5
Subcoeruleus nucleusipsiSubC4
C3 adrenaline cellsipsiC3-0.5
Nucleus of the solitary tractipsiSol-0.5
Raphe nucleiipsiRAN3
Dorsal raphe nucleusipsiDR-0.5
Midline raphe nucleiipsiMRAN-0.5
Raphe magnus nucleusipsiRMg4
Raphe obscurus nucleusipsiROb-0.5
Raphe pallidus nucleusipsiRPa4
Rostral level of the caudal ventrolateral medullaipsiCVLMR0
Rostral ventrolateral medullaipsiRVLM3
Nucleus interfascicularis hypoglossiipsiNIFH-0.5
Inferior oliveipsiIO-0.5
Ventral medulla oblongataipsiVMeO-0.5
Dorsal regionipsiDHR-0.5
Lateral hypothalamic areaipsiLH1
Lateral hypothalamic area perifornical partipsiPFx-0.5
Nucleus paraventricularis [Periventricular zone anterior region]ipsiPaPAR-0.5
Paraventricular hypothalamic nucleus parvocellular divisionipsiPavPo-0.5
Paraventricular nucleus ventral partipsiPaVe-0.5
Supramammillar nucleus lateral part lateral subpartipsiSuMLL0
Supramammillar nucleus lateral part medial subpartipsiSuMLM0
Supramammillar nucleus medial partipsiSuMM0
Retrochiasmatic areaipsiRCh-0.5
Paraventricular thalamic nucleusipsiPV-0.5
Zona incertaipsiZI1
Cerebral cortexipsiCEC-0.5
Prelimbic cortexipsiPrL-1
Infralimbic cortexipsiIL-1
Insular cortexipsiICX0
Somatomotoric regionsipsiSMR3
Medial agranular prefrontal cortexipsiAGm-1
Paralemniscal nucleuscontraPL-0.5
Mesopontine tegmental area caudal partcontraTGAmc2
Mesopontine tegmental area rostral partcontraTGAmr0.5
Paramedian reticular nucleuscontraPMn-0.5
Ventral part of spinal trigeminal nucleus oral partcontraSp5OV-0.5
Rostral ventrolateral medullacontraRVLM-0.5
Prelimbic cortexcontraPrL-1
Infralimbic cortexcontraIL-1
Insular cortexcontraICX2
Medial agranular prefrontal cortexcontraAGm-1

Key for weights

ValueWeight
-3 unknown
-2 fibers of passage
-1 not clear
-0.5 exists
0 not present
0.5 very light
1 light / sparse
1.5 light / moderate
2 moderate / dense
2.5 moderate / strong
3 strong
4 very strong





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