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Rat connectome



Ventral horn L5 right


Abbreviation
VHL5
Color       
Superior regionsSpinal cord layers L5

SynonymsAbbr.Language
Ventral horn L5VHL5Eng

SubregionsSide
Intermediate zone L5right
Interneuron groups of layer 9 L5right
Motoneuron groups of layer 9 L5right
Spinal cord border cells L5right
Spinal cord layer 9 L5right
Dorsolateral part of the ventral horn L5right
Ventral horn L5 lateral partright
Lateral border of upper part of the ventral horn L5right
Lateral part of ventral horn L5right

Output to

NameSideAbbr.WeightDetails
Central graycontraCG-0.5
Tegmental areacontraTGA-0.5
Cuneiforme nucleuscontraCnF-0.5
Lateral parabrachial nucleuscontraLPB-0.5
Lateral reticular nucleuscontraLRt-0.5
Lateral reticular nucleus magnocellular partcontraLRtMC3
Lateral reticular nucleus parvicellular partcontraLRtPC3
Lateral reticular nucleus subtrigeminal partcontraLRtS53
Midportion of the lateral reticular nucleuscontraMpLRt3
Paragigantocellular reticular nucleuscontraPGi-0.5
Lateral hypothalamic areacontraLH3
Dorsal hypothalamic areacontraDA3
Dorsomedial hypothalamic nucleus [Medial zone]contraDM3
Paraventricular hypothalamic nucleuscontraPa3
Suprachiasmatic nucleuscontraSCh3
Supraoptic nucleus [Supraoptic region]contraSO3
ThalamuscontraT-0.5
Submedius thalamic nucleuscontraSub3
Ventrobasal complex anterior partcontraVBa1
Central amygdaloid nucleuscontraCe0.5
Thoracal segment 12contraT120.5
Central grayipsiCG1
Central gray dorsal partipsiCGD-0.5
Central gray dorsoventral partipsiCGDV-0.5
Central gray mediolateral partipsiCGMeL-0.5
Nucleus of DarkschewitschipsiDk-0.5
Area surrounding the oculomotor complexipsiASOCS-0.5
Red nucleusipsiR-1
Inferior colliculusipsiICOL1
Intercollicular nucleusipsiInCo-0.5
Superior colliculusipsiSC1
Commissure of the superior colliculusipsicsc-2
Superior colliculus intermediate layersipsiSCi-0.5
Superior colliculus deep layersipsiSCd-0.5
Tegmental areaipsiTGA-0.5
Laterodorsal tegmental nucleusipsiLDTg1
Posterior lobe of the cerebellumipsiCERCPL1
Anterior lobeipsiAnL2
Mesencephalic reticular formationipsiMRF1
Cuneiforme nucleusipsiCnF-0.5
Lateral parabrachial nucleusipsiLPB-0.5
Parabrachial nucleus dorsal partipsiPBD-0.5
Lateral reticular nucleusipsiLRt-0.5
Lateral reticular nucleus magnocellular partipsiLRtMC1
Lateral reticular nucleus parvicellular partipsiLRtPC2
Lateral reticular nucleus subtrigeminal partipsiLRtS51
Nucleus of the solitary tractipsiSol-0.5
Dorsal column nucleiipsiDCN2
Cuneate nucleusipsiCu-0.5
Paragigantocellular reticular nucleusipsiPGi-0.5
Lateral hypothalamic areaipsiLH1.5
Dorsal hypothalamic areaipsiDA1.5
Dorsomedial hypothalamic nucleus [Medial zone]ipsiDM0.5
Paraventricular hypothalamic nucleusipsiPa0.5
Suprachiasmatic nucleusipsiSCh0.5
Supraoptic nucleus [Supraoptic region]ipsiSO0.5
Submedius thalamic nucleusipsiSub1.5
Ventrobasal complex anterior partipsiVBa0.5
Zona incertaipsiZI-0.5
Central amygdaloid nucleusipsiCe0.5
Posterior commissureipsipc-2
Medial geniculate nucleus medial partipsiMGM-0.5
Spinomesencephalic tractipsismT-2
Lumbar segment 1ipsiL1-1
Spinal nucleus of the bulbocavernosus lumbal segment 5ipsiBCL53
Sciatic nervecontrasci-0.5
Pelvic ganglionipsiAutoPeG-0.5
Peronal nerveipsiperonal-2
Sural nerveipsisural3
Sciatic nerveipsisci-0.5
Extensor digitorum longusipsiMuscExtDigLong-0.5
Biceps femoris muscleipsiMuscBF-0.5
Tibialis anterior muscleipsiMuscTA-0.5
Short plantar muscleipsiMuscSPM-0.5
Gastrocnemius muscleipsiMuscGC3
Soleus muscleipsiMuscSo-0.5
Extensor hallucis longus muscleipsiMuscEHL-0.5
Seminal vesicleipsiOrgRepSV-10

Input from

NameSideAbbr.WeightDetails
Periaqueductal graycontraPAG0
Dorsolateral periaqueductal gray caudal partcontraPAGdlc0
Ventrolateral periaqueductal gray caudal partcontraPAGvlc0
Ventrolateral periaqueductal gray rostral partcontraPAGvlr0
Laterodorsal tegmental nucleuscontraLDTg0.5
Pedunculopontine tegmental nucleuscontraPPTg3
A5 noradrenaline cellscontraA50.5
A7 noradrenaline cellscontraA70.5
Locus coeruleuscontraLC2
Ventrolateral medial reticular formationcontraVLRFm3
Gigantocellular reticular nucleuscontraGi1
Gigantocellular reticular nucleus alpha partcontraGiA1
Gigantocellular reticular nucleus ventral partcontraGiV1
Medial subnucleus reticularis ventraliscontraMSRV1
Subcoeruleus nucleuscontraSubC0.5
Raphe magnus nucleuscontraRMg1
Raphe pallidus nucleuscontraRPa-0.5
Lateral paragigantocellular nucleuscontraLPGi1
Lateral paragigantocellular nucleus alpha partcontraLPBGiA0.5
Rostral part of the ventromedial medulla oblongatacontraRMeObvm1
Caudal ventromedial medulla oblongatacontraMeObcvm2
Cerebral cortexcontraCEC1
Lateral agranular prefrontal cortexcontraAGl0.5
Medial agranular prefrontal cortexcontraAGm0.5
Primary somatosensory cortexcontraS10.5
Spinal cord layer 3 L2contraSCL3L20.5
Spinal cord layer 4 L2contraSCL4L20.5
Spinal cord layer 2 L2contraSCL2L20.5
Spinal cord layer 3 L3contraSCL3L30.5
Spinal cord layer 4 L3contraSCL4L30.5
Spinal cord layer 2 L3contraSCL2L30.5
Spinal cord layer 3 L4contraSCL3L40.5
Spinal cord layer 4 L4contraSCL4L40.5
Spinal cord layer 2 L4contraSCL2L40.5
Periaqueductal grayipsiPAG0
Dorsolateral periaqueductal gray caudal partipsiPAGdlc0
Ventrolateral periaqueductal gray caudal partipsiPAGvlc0
Ventrolateral periaqueductal gray rostral partipsiPAGvlr0
Red nucleusipsiR3
Red nucleus ventrolateral partipsiRveL-0.5
Laterodorsal tegmental nucleusipsiLDTg1
Pedunculopontine tegmental nucleusipsiPPTg3
Interstitial nucleus of CajalipsiInC-0.5
A5 noradrenaline cellsipsiA50.5
A7 noradrenaline cellsipsiA70.5
Locus coeruleusipsiLC3
Locus coeruleus caudal partipsiLCca-0.5
Locus coeruleus ventral partipsiLCv-0.5
Parapyramidal nucleusipsiPPy-0.5
Magnocellular reticular nucleus alpha partipsiNRMCa-0.5
Ventrolateral medial reticular formationipsiVLRFm3
Mesencephalic reticular formationipsiMRF-0.5
Pontine reticular nucleus caudal partipsiPNC-0.5
Gigantocellular reticular nucleusipsiGi2
Gigantocellular reticular nucleus alpha partipsiGiA3
Gigantocellular reticular nucleus ventral partipsiGiV3
Medial subnucleus reticularis ventralisipsiMSRV2
Subcoeruleus nucleusipsiSubC0.5
Lateral vestibular nucleusipsiLVe0.5
Raphe magnus nucleusipsiRMg3
Raphe obscurus nucleusipsiROb-0.5
Raphe pallidus nucleusipsiRPa-0.5
Paragigantocellular reticular nucleusipsiPGi-0.5
Lateral paragigantocellular nucleusipsiLPGi3
Lateral paragigantocellular nucleus alpha partipsiLPBGiA2
Lateral paragigantocellular nucleus external partipsiLPBGiE2
Rostral part of the ventromedial medulla oblongataipsiRMeObvm3
Caudal ventromedial medulla oblongataipsiMeObcvm3
Dorsomedial hypothalamic nucleusipsiDMHy0
Lateral zoneipsiLHA3
Lateral hypothalamic areaipsiLH1
Dorsal hypothalamic areaipsiDA1
Ventromedial hypothalamic nucleusipsiVMH0
Arcuate nucleusipsiArc0
Paraventricular hypothalamic nucleus posterior part [Periventricular zone anterior region]ipsiPaPo-0.5
Paraventricular hypothalamic nucleus medial parvicellular part [Periventricular zone anterior region]ipsiPaMP-0.5
Paraventricular hypothalamic nucleus anterior parvicellular part [Periventricular zone anterior region]ipsiPaAP-0.5
Paraventricular hypothalamic nucleusipsiPa-0.5
Paraventricular hypothalamic nucleus magnocellular division posterior partipsiPaMagP1
Paraventricular hypothalamic nucleus dorsal parvocellular divisionipsiPavPoD-0.5
Perifornical nucleusipsiPeF3
Retrochiasmatic areaipsiRCh1
Zona incertaipsiZI0
Zona incerta most ventral borderipsiZIVb1
Fornixipsif1
Spinal cord layer 3 L2ipsiSCL3L20.5
Spinal cord layer 4 L2ipsiSCL4L20.5
Spinal cord layer 2 L2ipsiSCL2L20.5
Spinal cord layer 3 L3ipsiSCL3L30.5
Spinal cord layer 4 L3ipsiSCL4L30.5
Spinal cord layer 2 L3ipsiSCL2L30.5
Spinal cord layer 3 L4ipsiSCL3L40.5
Spinal cord layer 4 L4ipsiSCL4L40.5
Spinal cord layer 2 L4ipsiSCL2L40.5
Dorsal root ganglion L5ipsiDRGL53
Sciatic nervecontrasci-0.5
Sural nerveipsisural-0.5
Sciatic nerveipsisci-0.5

Key for weights

ValueWeight
-3 unknown
-2 fibers of passage
-1 not clear
-0.5 exists
0 not present
0.5 very light
1 light / sparse
1.5 light / moderate
2 moderate / dense
2.5 moderate / strong
3 strong
4 very strong





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