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Rat connectome



Subparafascicular thalamic nucleus medial part left


Abbreviation
SPFme
Color       
Superior regionsSubparafascicular thalamic nucleus

SynonymsAbbr.Language
Subparafascicular thalamic nucleus medial partSPFme 
Medial subparafascicular thalamic nucleus  
Nucleus subparafascicularis medial part  

Output to

NameSideAbbr.WeightDetails
Spinal cord layers C1ipsiSCLC12
Spinal cord layers C2ipsiSCLC22
Spinal cord layers C3ipsiSCLC32
Spinal cord layers C4ipsiSCLC42
Spinal cord layers C5ipsiSCLC52
Spinal cord layers C6ipsiSCLC62
Spinal cord layers C7ipsiSCLC72
Spinal cord layers C8ipsiSCLC82

Input from

NameSideAbbr.WeightDetails
Nuclei of the lateral lemniscusipsiNLL1
Medial paralemniscal nucleusipsiMPL2
Dorsolateral periaqueductal grayipsiDLPAG3
Dorsomedial periaqueductal grayipsiDMPAG1
Lateral periaqueductal grayipsiLPAG1
Ventrolateral periaqueductal grayipsiVLPAG1
External cortex of the inferior colliculusipsiECIC1
Dorsal cortex of the inferior colliculusipsiDCIC2
Superior colliculus deep layersipsiSCd2
Peripeduncular areaipsiPPA2
Pedunculopontine tegmental nucleusipsiPPTg1
Barringtons nucleusipsiBar1
Nucleus incertus pars compactaipsiNIc-0.5
Cuneiforme nucleusipsiCnF2
Koelliker Fuse nucleusipsiKF1
Lateral parabrachial nucleusipsiLPB1
Dorsal raphe nucleusipsiDR1
Periolivary areaipsiPOA1
Diagonal band of BrocaipsiDBB1
Substantia innominataipsiSI1
Lateral preoptic areaipsiLPO1
Tenia tectaipsiTT1
Lateral hypothalamic areaipsiLH1
Anteroventral periventricular nucleus [Anterior hypothalamic area]ipsiAVPe1
Anterior hypothalamic nucleusipsiAHn2
Dorsomedial hypothalamic nucleus [Medial zone]ipsiDM1
Posterior hypothalamic nucleusipsiPH2
Ventromedial hypothalamic nucleusipsiVMH2
Premammillary nucleus dorsal partipsiPMD2
Perifornical nucleusipsiPeF1
Subbrachial nucleusipsiSubB1
Suprageniculate thalamic nucleusipsiSG1
Posterior intralaminar thalamic nucleusipsiPIL2
Lateral posterior thalamic nucleusipsiLP1
Subparafascicular thalamic nucleus parvicellular partipsiSPFp2
Zona incertaipsiZI2
Nucleus of the fields of ForelipsiF2
Lateral habenular nucleusipsiLHb1
Basomedial amygdaloid nucleusipsiBM1
Bed nucleus of the stria terminalisipsiBST1
Anterior amygdaloid areaipsiAA2
Medial amygdaloid nucleusipsiMe1
ClaustrumipsiCl1
Ventral pallidumipsiVP1
Subthalamic nucleusipsiSTh1
SubiculumipsiS2
Cingulate cortexipsiCg1
Prelimbic cortexipsiPrL2
Infralimbic cortexipsiIL2
Frontal association cortexipsiFrA1
Auditory regionsipsiAU1
Insular cortexipsiICX1
Perirhinal cortexipsiA351
Ectorhinal cortexipsiA362
Dorsal peduncular cortexipsiDP1
Nucleus of the posterior commissureipsiPCom1
Olfactory-limbic-transitional zoneipsiOFLT2
Lateral septal nucleus intermediate partipsiLSI3
Lateral septal nucleus ventral partipsiLSV1
Nuclei of the lateral lemniscuscontraNLL0.5
Medial paralemniscal nucleuscontraMPL0.5
Dorsolateral periaqueductal graycontraDLPAG0.5
Dorsomedial periaqueductal graycontraDMPAG0.5
Lateral periaqueductal graycontraLPAG0.5
Ventrolateral periaqueductal graycontraVLPAG0.5
External cortex of the inferior colliculuscontraECIC0.5
Dorsal cortex of the inferior colliculuscontraDCIC0.5
Superior colliculus deep layerscontraSCd0.5
Peripeduncular areacontraPPA0.5
Pedunculopontine tegmental nucleuscontraPPTg0.5
Barringtons nucleuscontraBar0.5
Cuneiforme nucleuscontraCnF0.5
Koelliker Fuse nucleuscontraKF0.5
Lateral parabrachial nucleuscontraLPB0.5
Dorsal raphe nucleuscontraDR0.5
Periolivary areacontraPOA0.5
Diagonal band of BrocacontraDBB0.5
Substantia innominatacontraSI0.5
Lateral preoptic areacontraLPO0.5
Tenia tectacontraTT0.5
Lateral hypothalamic areacontraLH0.5
Anteroventral periventricular nucleus [Anterior hypothalamic area]contraAVPe0.5
Anterior hypothalamic nucleuscontraAHn0.5
Dorsomedial hypothalamic nucleus [Medial zone]contraDM0.5
Posterior hypothalamic nucleuscontraPH0.5
Ventromedial hypothalamic nucleuscontraVMH0.5
Premammillary nucleus dorsal partcontraPMD0.5
Perifornical nucleuscontraPeF0.5
Subbrachial nucleuscontraSubB0.5
Suprageniculate thalamic nucleuscontraSG0.5
Posterior intralaminar thalamic nucleuscontraPIL0.5
Lateral posterior thalamic nucleuscontraLP0.5
Subparafascicular thalamic nucleus parvicellular partcontraSPFp0.5
Zona incertacontraZI0.5
Nucleus of the fields of ForelcontraF0.5
Lateral habenular nucleuscontraLHb0.5
Basomedial amygdaloid nucleuscontraBM0.5
Bed nucleus of the stria terminaliscontraBST0.5
Anterior amygdaloid areacontraAA0.5
Medial amygdaloid nucleuscontraMe0.5
ClaustrumcontraCl0.5
Ventral pallidumcontraVP0.5
Subthalamic nucleuscontraSTh0.5
SubiculumcontraS0.5
Cingulate cortexcontraCg0.5
Prelimbic cortexcontraPrL0.5
Infralimbic cortexcontraIL0.5
Frontal association cortexcontraFrA0.5
Auditory regionscontraAU0.5
Insular cortexcontraICX0.5
Perirhinal cortexcontraA350.5
Ectorhinal cortexcontraA360.5
Dorsal peduncular cortexcontraDP0.5
Nucleus of the posterior commissurecontraPCom0.5
Olfactory-limbic-transitional zonecontraOFLT0.5
Lateral septal nucleus intermediate partcontraLSI0.5
Lateral septal nucleus ventral partcontraLSV0.5

Key for weights

ValueWeight
-3 unknown
-2 fibers of passage
-1 not clear
-0.5 exists
0 not present
0.5 very light
1 light / sparse
1.5 light / moderate
2 moderate / dense
2.5 moderate / strong
3 strong
4 very strong





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