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Rat connectome



Subparafascicular thalamic nucleus left


Abbreviation
SPF
Color       
Superior regionsVentral thalamus

SynonymsAbbr.Language
Subparafascicular thalamic nucleusSPFEng
Subparafascicular nucleus  

SubregionsSide
Lateral subparafascicular thalamic nucleusleft
Subparafascicular thalamic nucleus caudal partleft
Subparafascicular thalamic nucleus central partleft
Subparafascicular thalamic nucleus dorsal partleft
Subparafascicular thalamic nucleus magnocellular partleft
Subparafascicular thalamic nucleus medial partleft
Subparafascicular thalamic nucleus parvicellular partleft
Subparafascicular thalamic nucleus peripheral partleft
Subparafascicular thalamic nucleus rostral partleft
Subparafascicular thalamic nucleus rostrocaudal partleft
Subparafascicular thalamic nucleus ventral partleft

Output to

NameSideAbbr.WeightDetails
Medial paralemniscal nucleusipsiMPL2
Nucleus of DarkschewitschipsiDk0
Oculomotor nucleusipsi30
Dorsal periaqueductal grayipsiDPAG3
Commissure of the superior colliculusipsicsc-2
Superior colliculus deep layersipsiSCd2
Peripeduncular areaipsiPPA1
Peripeduncular nucleusipsiPP-0.5
Ventrolateral tegmental areaipsiVLTg1
Edinger Westphal nucleusipsiEW1
Pontine nucleiipsiPn0.5
Inferior oliveipsiIO3
Inferior olive dorsal nucleusipsiIOD3
Inferior olive dorsal nucleus lateral partipsiIODL2
Inferior olive medial nucleus lateral partipsiIOML2
Inferior olive principal nucleusipsiIOPr3
Inferior olive principal nucleus rostral partipsiIOPrR2
Rostral ventral respiratory groupipsiRVRG1
ProsencephalonipsiPRC2
Median eminenceipsiME0
Endopiriform systemipsiEnN1
Diagonal band of BrocaipsiDBB2
Nucleus of the horizontal limb of the diagonal bandipsiHDB1
Medial septal nucleusipsiMS2
Substantia innominataipsiSI2
Preoptic regionipsiPREO2
Lateral preoptic areaipsiLPO3
Medial preoptic areaipsiMPA3
Medial preoptic area lateral partipsiMPAL2
Median preoptic nucleusipsiMnPO1
Ventrolateral preoptic nucleusipsiVLPO1
Tenia tectaipsiTT2
Tuberomammillary nucleusipsiTuM2
Vascular organ of the lamina terminalisipsiVOLT0
HypothalamusipsiHYPO3
Lateral hypothalamic areaipsiLH3
Medial division of the hypothalamusipsiMdH2
Anterior hypothalamic areaipsiAHA3
Area lateralis hypothalamicus posterior [Regio hypothalamus caudalis]ipsiDMrhc2
Dorsal hypothalamic areaipsiDA3
Dorsomedial hypothalamic areaipsiDMHyA3
Dorsomedial hypothalamic nucleus [Medial zone]ipsiDM-0.5
Posterior hypothalamic areaipsiPHA3
Ventromedial hypothalamic nucleusipsiVMH2
Ventromedial hypothalamic nucleus ventral partipsiVMHV3
Mediobasal hypothalamus anterior partipsiMeHypoAnt0.5
Mediobasal hypothalamus posterior partipsiMeHypoP0.5
Arcuate nucleusipsiArc1
Nucleus paraventricularis magnocellular partipsiPaMa0.5
Paraventricular hypothalamic nucleus medial parvocellular partipsiMPPa3
Periparaventricular area of hypothalamusipsiPPVA2
Paraventricular hypothalamic nucleusipsiPa2
Periventricular hypothalamic nucleusipsiPe1
Suprachiasmatic nucleusipsiSCh1
Supraoptic nucleus [Supraoptic region]ipsiSO1
Medial mammillary nucleusipsiMMn0
Medial mammillary nucleus lateral partipsiML1
Premammillary nucleus dorsal partipsiPMD1
Premammillary nucleus ventral partipsiPMV1
Supramammillar nucleusipsiSuM2
Perifornical nucleusipsiPeF3
Retrochiasmatic areaipsiRCh3
Retrochiasmatic area lateral partipsiRChL3
Retrochiasmatic area medial partipsiRChm2
Retrochiasmatic area anterior medioventral partipsiRChAMV2
Anterodorsal thalamic nucleusipsiAD2
Anteroventral thalamic nucleusipsiAV1
Central medial thalamic nucleusipsiCM2
Parafascicular thalamic nucleusipsiPF2
Posterior thalamic nuclear groupipsiPo2
Suprageniculate thalamic nucleusipsiSG2
Mediodorsal thalamic nucleusipsiMD2
Paratenial thalamic nucleusipsiPT1
Paraventricular thalamic nucleusipsiPV2
Reuniens thalamic nucleusipsiRe3
Posterior intralaminar thalamic nucleusipsiPIL3
Lateral posterior thalamic nucleusipsiLP2
Laterodorsal thalamic nucleusipsiLD2
Ventral thalamusipsiVNT1
Reticular thalamic nucleusipsiRt1
Subparafascicular thalamic nucleusipsiSPF2
Subparafascicular thalamic nucleus parvicellular partipsiSPFp2
Nucleus of the fields of ForelipsiF3
Tuber cinereum areaipsiTC3
Lateral habenular nucleusipsiLHb2
Medial habenular nucleusipsiMHb0
Amygdaloid complexipsiAC3
Laterobasal nuclear complexipsiLBNC-0.5
Basal nucleusipsiBnc2
Accessory basal nucleusipsiAB2
Basolateral amygdaloid nucleusipsiBL3
Anterior basolateral nucleusipsiBLA-0.5
Basolateral nucleus rostral partipsiBLRP-0.5
Posterior basolateral nucleusipsiBLP-0.5
Basomedial amygdaloid nucleusipsiBM2
Lateral amygdaloid nucleusipsiLA2
Dorsolateral part of the lateral nucleusipsiLaDL-0.5
Lateral nucleus ventral portionipsiLAVp-0.5
Posterior part of the lateral nucleusipsiLAP-0.5
Bed nucleus of the stria terminalisipsiBST2
Bed nucleus of the stria terminalis caudal part caudoventral regionipsiBSTCacv1
Bed nucleus of the stria terminalis caudal part perifornical regionipsiBSTCapf1
Bed nucleus of the stria terminalis intraamygdaloid divisionipsiBSTIA3
Bed nucleus of the stria terminalis lateral divisionipsiBSTL2
Bed nucleus of the stria terminalis medial divisionipsiBSTM2
Central amygdaloid nucleusipsiCe3
Central amygdaloid nucleus anterior partipsiCeAn1
Central amygdaloid nucleus lateral divisionipsiCeL2
Central amygdaloid nucleus lateral division dorsal partipsiCeLd1
Dorsalmost part of the lateral portion of the central amygdaloid nucleusipsiCeLDm2
Central amygdaloid nucleus medial divisionipsiCeM2
Central amygdaloid nucleus pallidal partipsiCePa0.5
Central amygdaloid nucleus putamenal partipsiCePu0.5
Central amygdaloid nucleus rostral partipsiCerp2
Central amygdaloid nucleus ventral partipsiCeV-0.5
Amygdalopiriform transition areaipsiAPir1
Anterior amygdaloid areaipsiAA2
Cortical amygdaloid nucleusipsiCAn1
Anterior cortical amygdaloid nucleusipsiACo2
Posterior amygdaloid nucleusipsiCOAp0.5
Medial amygdaloid nucleusipsiMe2
Rostrocaudal extent of the medial part of the amygdaloid complex medial nucleusipsiMeMRC2
Amygdalohippocampal areaipsiAHi2
Amygdalostriatal transition areaipsiAStr1
Amygdalostriatal transition area caudal partipsiAStrCa2
ClaustrumipsiCl1
Globus pallidusipsiGP2
Ventral pallidumipsiVP2
Accumbens nucleusipsiAc1
Accumbens nucleus anteromedial partipsiAcAM1
Accumbens nucleus coreipsiAcbC2
Accumbens nucleus shellipsiAcbSh2
Caudate putamenipsiCPu2
Caudal striatumipsiCPuc-0.5
Caudate putamen caudolateral partipsiCPucl2
Caudolateralmost part of the caudate putamenipsiCPuCLm1
Dorsal striatumipsiCPud3
Posterior caudate putamenipsiCPup1
Ventromedial striatumipsiCPuvm2
Fundus of the striatumipsiFS2
Subthalamic nucleusipsiSTh1
Striatohypothalamic nucleusipsiSTHY3
Dentate gyrusipsiDG0
Field CA1 of hippocampusipsiCA10
Field CA3 of hippocampusipsiCA30
SubiculumipsiS1
ParasubiculumipsiPaS1
Entorhinal cortexipsiEnt1
Lateral entorhinal cortex ventral partipsiVLEA1
Lateral entorhinal cortex ventromedial partipsiVMEAL1
Cingulate cortexipsiCg1
Prelimbic cortexipsiPrL1
Infralimbic cortexipsiIL1
NeocortexipsiNEOCX3
Frontal association cortexipsiFrA2
Frontal association cortex layer 1ipsiFrALL10
Temporal cortexipsiTE2
Base of the temporal cortical areaipsiTEB1
Auditory regionsipsiAU0
Auditory regions layer 1ipsiAUL10
Insular cortexipsiICX1
Granular insular cortexipsiGI2
Granular insular cortex posterior partipsiGIpo2
Insular cortex caudal partipsiICXca1
Insular cortex layer 1ipsiICXL10
Insular cortex midrostral partipsiICXmr1
Perirhinal cortexipsiA352
Perirhinal cortex anterior portionipsiPRha1
Perirhinal cortex dorsal portionipsiPRhd-0.5
Perirhinal cortex layer 1ipsiA35L10
Ectorhinal cortexipsiA362
Ectorhinal cortex layer 1ipsiA36L10
Dorsal peduncular cortexipsiDP2
Prefrontal cortexipsiPFC2
Somatomotoric regionsipsiSMR1
Sensory regionsipsiSR1
Visual regionsipsiVR0
Orbital cortexipsiOrC1
Orbital cortex layer 1ipsiOrCL10
Lateral geniculate complexipsiLG1
Medial geniculate nucleus medial partipsiMGM2
Medial geniculate nucleus ventral partipsiMGV1
Olfactory bulb A16ipsiMOB0
Anterior olfactory nucleusipsiAON1
Olfactory tubercleipsiTuO2
Lateral septal nucleusipsiLS2
Lateral septal nucleus caudal part ventral zoneipsiLScv2
Lateral septal nucleus dorsal partipsiLSD0
Lateral septal nucleus intermediate partipsiLSI3
Lateral septal nucleus ventral partipsiLSV2
Lateral septal nucleus ventrolateral partipsiLSvl2
Cervical segment 1ipsiCS13
Spinal cord layers C1ipsiSCLC12
Cervical segment 2ipsiCS23
Spinal cord layers C2ipsiSCLC22
Cervical segment 3ipsiCS33
Spinal cord layers C3ipsiSCLC32
Spinal cord layers C4ipsiSCLC42
Spinal cord layers C5ipsiSCLC52
Thoracic intermediolateral cell columnipsiTSegiL-0.5
Lumbar segments intermediolateral partipsiLSegIML-0.5
Periaqueductal graycontraPAG2
Dorsal periaqueductal graycontraDPAG2
Lateral periaqueductal graycontraLPAG2
Pontine nucleicontraPn0
Inferior olivecontraIO1
Rostral ventral respiratory groupcontraRVRG1
Dorsomedial hypothalamic nucleus [Medial zone]contraDM-0.5
Anterior cruciate ligamentipsiLigAntCru1
Anterior cruciate ligamentcontraLigAntCru1

Input from

NameSideAbbr.WeightDetails
Central grayipsiCG2
Dorsolateral periaqueductal grayipsiDLPAG1
Lateral periaqueductal grayipsiLPAG1
Ventral periaqueductal grayipsiVPAG0
Periventricular gray matteripsiPVG0
Central nucleus of the inferior colliculusipsiCIC0
External cortex of the inferior colliculusipsiECIC1.5
Dorsal cortex of the inferior colliculusipsiDCIC1.5
Substantia nigra A9ipsiSN-1
Peripeduncular areaipsiPPA1
Dorsal tegmental nucleusipsiDTg0
Reticular systemipsiRF-1
Cuneiforme nucleusipsiCnF1.5
Parabrachial nucleusipsiPB2
Lateral parabrachial nucleus external partipsiLPBE1
Lateral parabrachial nucleus internal partipsiLPBI2
Parabrachial nucleus central lateral partipsiPBCeL1
Parabrachial nucleus medialipsiPBnMe2
Parabrachial nucleus ventrolateral partipsiPBveLa2
Gigantocellular reticular nucleusipsiGi0
Medullary reticular nucleus dorsal partipsiMdDd2
Dorsal raphe nucleusipsiDR-0.5
Median raphe nucleusipsiMnR0
Pontine raphe nucleusipsiPnR0
Raphe magnus nucleusipsiRMg0
Lateral hypothalamic areaipsiLH4
Lateral hypothalamic area perifornical partipsiPFx4
Dorsomedial hypothalamic nucleus [Medial zone]ipsiDM4
Dorsomedial hypothalamic nucleus dorsomedial partipsiDMDM4
Posterior hypothalamic nucleus caudal partipsiPHCa0
Posterior hypothalamic nucleus rostral partipsiPHRo0
Ventromedial hypothalamic nucleus anterior partipsiVMHA0.5
Ventromedial hypothalamic nucleus central partipsiVMHC1
Ventromedial hypothalamic nucleus dorsomedial partipsiVMHDM-0.5
Suprachiasmatic nucleusipsiSCh1
Posterior limitans thalamic nucleusipsiPLi-1
Suprageniculate thalamic nucleusipsiSG-1
Posterior intralaminar thalamic nucleusipsiPIL-0.5
Reticular thalamic nucleusipsiRt2
Subparafascicular thalamic nucleusipsiSPF2
Lateral subparafascicular thalamic nucleusipsiSPFL-1
Subparafascicular thalamic nucleus rostral partipsiSPFr2
Anterior pretectal nucleusipsiAPT-1
Anterior pretectal nucleus caudal partipsiAPTca2
Anterior pretectal nucleus rostral partipsiAPTro2
Basolateral amygdaloid nucleusipsiBL1
Basomedial amygdaloid nucleusipsiBM1
Central amygdaloid nucleusipsiCe2
Anterior cortical amygdaloid nucleusipsiACo2
Medial amygdaloid nucleusipsiMe2
Medial amygdaloid nucleus anterodorsal partipsiMeAD0.5
Amygdalohippocampal areaipsiAHi2
Amygdalostriatal transition areaipsiAStr-0.5
Globus pallidusipsiGP-0.5
Posterior caudate putamenipsiCPup-1
SubiculumipsiS2
Temporal association area 2ipsiTe22
Temporal association area 3ipsiTe32.5
Temporal association cortex 1ipsiTeA2
Primary auditory cortex layer 5ipsiAu1L52
Agranular insular cortex posterior part pressor siteipsiAIPp1
Perirhinal cortexipsiA352
Perirhinal cortex anterior portion layer 3 to layer 5ipsiPRhaL3L51
Perirhinal cortex anterior portion layer 5 to layer 6ipsiPRhaL5L62
Perirhinal cortex anterior portion layer 6ipsiPRhaL62
Medial geniculate nucleusipsiMG2
Medial geniculate nucleus dorsal partipsiMGD-1
Medial geniculate nucleus dorsal part medial subdivisionipsiMGDm-1
Medial geniculate nucleus medial partipsiMGM1
Medial geniculate nucleus ventral partipsiMGV-1
Lateral spinal nucleus C7ipsiLSpC70.5
Spinal cord layer 5 C7ipsiSCL5C71
Spinal cord layer 3 C7ipsiSCL3C71
Spinal cord layer 4 C7ipsiSCL4C71
Area X L3ipsiSCL10L3-0.5
Area X L4ipsiSCL10L4-0.5
Spinal cord layer 7 L4ipsiSCL7L4-0.5
Central graycontraCG1
Central nucleus of the inferior colliculuscontraCIC0
External cortex of the inferior colliculuscontraECIC0.5
Dorsal cortex of the inferior colliculuscontraDCIC0.5
Superior cerebellar peduncle lateral tipcontrasucepLt1
Cuneiforme nucleuscontraCnF0.5
Parabrachial nucleuscontraPB1
Lateral parabrachial nucleus external partcontraLPBE2
Medullary reticular nucleus dorsal partcontraMdDd3
Ventromedial hypothalamic nucleus anterior partcontraVMHA0.5
Ventromedial hypothalamic nucleus central partcontraVMHC0.5
Ventromedial hypothalamic nucleus dorsomedial partcontraVMHDM1
Anterior pretectal nucleus caudal partcontraAPTca1
Anterior pretectal nucleus rostral partcontraAPTro1
Central amygdaloid nucleuscontraCe0
Primary auditory cortex layer 5contraAu1L51
Lateral spinal nucleus C7contraLSpC70.5
Area X C7contraSCL10C70.5
Spinal cord layer 5 C7contraSCL5C71
Spinal cord layer 6 C7contraSCL6C70.5
Spinal cord layer 3 C7contraSCL3C71
Spinal cord layer 4 C7contraSCL4C71
Spinal cord layer 1 C7contraSCL1C70.5
Spinal cord layer 2 C7contraSCL2C70.5
Spinal cord layer 7 C7contraSCL7C70.5

Key for weights

ValueWeight
-3 unknown
-2 fibers of passage
-1 not clear
-0.5 exists
0 not present
0.5 very light
1 light / sparse
1.5 light / moderate
2 moderate / dense
2.5 moderate / strong
3 strong
4 very strong





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