University of Rostock

Department of Anatomy

Neuroscience Group

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Rat connectome



Spinal cord layers C6 left


Abbreviation
SCLC6
Color       
Superior regionsCervical segment 6

SynonymsAbbr.Language
Spinal cord layers C6SCLC6Eng
Spinal gray matter of segment C6SCLC6Eng

SubregionsSide
Area X C6left
Dorsal horn C6left
Ventral horn C6left

Output to

NameSideAbbr.WeightDetails
MesencephalonipsiMEC0
Central grayipsiCG2
Superior colliculusipsiSC2
Mesencephalic reticular formationipsiMRF2
Gigantocellular reticular nucleusipsiGi0
Lateral reticular nucleusipsiLRt0
Parvicellular reticular nucleusipsiPCRt1
Facial nucleus intermediate partipsi7i1
Facial nucleus lateral subnucleusipsi7L1
Hypoglossal motor nucleusipsi12M1
Ventral part of spinal trigeminal nucleus oral partipsiSp5OV-0.5
Vasodepressor part of caudal midline medulla oblongataipsiCMeObmVd1.5
Nucleus ZipsiZ1
Inferior oliveipsiIO2
Medial septal nucleusipsiMS1
Substantia innominataipsiSI1
Lateral hypothalamic areaipsiLH1
Rostral part of suprachiasmatic nucleus ventrolateral partipsiSCnVLR1
ThalamusipsiT0
Dorsal thalamusipsiDOR1
Anterior group of the dorsal thalamusipsiATN2
Central medial thalamic nucleusipsiCM0
Centrolateral thalamic nucleusipsiCL2
Parafascicular thalamic nucleusipsiPF1
Parafascicular thalamic nucleus medial partipsiPFM2
Posterior thalamic nuclear groupipsiPo2
Submedius thalamic nucleusipsiSub2
Ventrobasal complexipsiVB2
Ventrobasal complex lateral part caudal partipsiVBLC0
Ventrobasal complex medial partipsiVBM1.5
Lateral posterior thalamic nucleusipsiLP1.5
Mediolateral thalamic nucleusipsiMeLT2
Zona incertaipsiZI2
Amygdaloid complexipsiAC1
Globus pallidusipsiGP1
Ventral pallidumipsiVP1
Caudate putamenipsiCPu1
Dorsal striatumipsiCPud1
Ventral striatumipsiCPuv1
Forelimb motor cortexipsiFMCx1
Medial geniculate nucleus caudal partipsiMGc2
Medial geniculate nucleus dorsal partipsiMGD0
Medial geniculate nucleus medial partipsiMGM0
Medial geniculate nucleus ventral partipsiMGV0
Mesencephalic reticular formationcontraMRF1
Parvicellular reticular nucleuscontraPCRt1
Ventral part of spinal trigeminal nucleus oral partcontraSp5OV-0.5
Medial septal nucleuscontraMS1
Substantia innominatacontraSI1
Lateral hypothalamic areacontraLH1
Dorsal thalamuscontraDOR2
Anterior group of the dorsal thalamuscontraATN2.5
Central medial thalamic nucleuscontraCM0
Centrolateral thalamic nucleuscontraCL2
Parafascicular thalamic nucleuscontraPF2
Submedius thalamic nucleuscontraSub2
Ventrobasal complex lateral part caudal partcontraVBLC2
Mediolateral thalamic nucleuscontraMeLT2.5
Amygdaloid complexcontraAC1
Globus palliduscontraGP1
Ventral pallidumcontraVP1
Caudate putamencontraCPu1
Dorsal striatumcontraCPud1
Ventral striatumcontraCPuv1
Forelimb motor cortexcontraFMCx2
Bulbocavernosus muscleipsiMuscBCV-10
Ischiocavernosus muscleipsiMuscicav-10

Input from

NameSideAbbr.WeightDetails
Red nucleusipsiR1
Red nucleus dorsomedial partipsiRdm3
Red nucleus medial partipsiRmed3
Red nucleus ventrolateral partipsiRveL3
Superior colliculusipsiSC1
Superior colliculus deep layersipsiSCd1
Peduncularpontine nucleusipsiPPN-0.5
Retrorubral nucleusipsiRR1
Sublaterodorsal tegmental nucleusipsiSLD-0.5
Pedunculopontine tegmental nucleusipsiPPTg1
Pedunculopontine tegmental nucleus pars compactaipsiPPNC2
Pedunculopontine tegmental nucleus pars dissipataipsiPPNd3
Interstitial nucleus of CajalipsiInC-0.5
Locus coeruleusipsiLC2
Magnocellular reticular nucleus alpha partipsiNRMCa2
Magnocellular reticular nucleus beta partipsiNRMCb2
Ventral reticular formationipsiVRF2
Nucleus reticular ventralis pars betaipsiRVb2
Nucleus reticularis ventralis pars alphaipsiRVa2
Mesencephalic reticular formationipsiMRF1
Deep mesencephalic nucleusipsiDpMe1
Pontine reticular nucleus oral partipsiPnO3
Pontine reticular nucleus caudal partipsiPNC3
Peribrachial regionipsiPBR2
Cuneiforme nucleusipsiCnF-0.5
Parabrachial nucleusipsiPB2
Koelliker Fuse nucleusipsiKF1
Parabrachial nucleus lateral crescentipsiPBlc1
Medial parabrachial nucleus external partipsiMPBE1
Medial parabrachial nucleus medial divisionipsiMPBM1
Parabrachial nucleus ventral partipsiPBV3
Gigantocellular reticular nucleusipsiGi3
Gigantocellular reticular nucleus alpha partipsiGiA2
Lateral reticular nucleusipsiLRt2
Subnucleus reticularis dorsalis dorsal partipsiSRDD2
Medial subnucleus reticularis ventralisipsiMSRV2
Subcoeruleus nucleusipsiSubC2
Spinal trigeminal nucleus caudal partipsiSp5C2
Spinal trigeminal nucleus interpolar part dorsolateralipsiSp5IdL2
Spinal trigeminal nucleus interpolar part ventrolateral magnocellularipsiSp5Imc2
Vestibular nucleiipsiVnc1.5
Medial vestibular nucleus caudal partipsiMVeP2
Lateral vestibular nucleusipsiLVe3
Inferior vestibular nucleusipsiIVN2
Raphe magnus nucleusipsiRMg3
Raphe obscurus nucleusipsiROb3
Raphe obscurus nucleus rostral partipsiRObr2
Raphe pallidus nucleusipsiRPa3
Raphe pallidus nucleus rostral partipsiRParo2
Cuneate nucleus caudal partipsiCuC1
Cuneate nucleus rostral partipsiCuRo0.5
Middle part of cuneate nucleusipsiCuM0.5
GracileipsiGra0.5
Nucleus of BischoffipsiNBi1.5
Nucleus interfascicularis hypoglossiipsiNIFH2
Lateral paragigantocellular nucleusipsiLPGi2
Rostral part of the ventromedial medulla oblongataipsiRMeObvm-0.5
Caudal ventromedial medulla oblongataipsiMeObcvm-0.5
Lateral hypothalamic areaipsiLH-0.5
Ventromedial hypothalamic nucleus ventral partipsiVMHV1
Arcuate nucleusipsiArc1
Paraventricular hypothalamic nucleusipsiPa-0.5
Anterolateral regionipsiMMna2
A11 dopamine cellsipsiA112
Retrochiasmatic areaipsiRCh1
Subparafascicular thalamic nucleus dorsal partipsiSPFd2
Subparafascicular thalamic nucleus medial partipsiSPFme2
Subparafascicular thalamic nucleus peripheral partipsiSPFpe1
Subparafascicular thalamic nucleus rostral partipsiSPFr2.5
Subparafascicular thalamic nucleus ventral partipsiSPFv2
Zona incertaipsiZI-0.5
Zona incerta caudal partipsiZIC1
Zona incerta magnocellular partipsiZIMag2
Cerebral cortexipsiCEC1
Agranular insular cortexipsiAI1
Forelimb motor cortexipsiFMCx0.5
Forelimb motor cortex layer 5ipsiFMCxL53
Hindlimb motor cortex layer 5ipsiHMCxL53
Primary somatosensory cortexipsiS12
Secondary somatosensory cortexipsiS20
Spinal cordipsiMES-0.5
Nucleus dorsalis of ClarkeipsiDHMESdc1
Lateral spinal nucleusipsiMESLn1
Area X L1ipsiSCL10L11
Spinal cord layer 5 L1ipsiSCL5L12
Spinal cord layer 3 L1ipsiSCL3L11
Spinal cord layer 4 L1ipsiSCL4L12
Spinal cord layer 1 L1ipsiSCL1L11
Spinal cord layer 2 L1ipsiSCL2L11
Spinal cord layer 7 L1ipsiSCL7L13
Spinal cord layer 8 L1ipsiSCL8L11
Red nucleuscontraR3
Red nucleus dorsomedial partcontraRdm3
Red nucleus rostral partcontraRnRo3
Red nucleus ventrolateral partcontraRveL3
Ventrolateral tegmental areacontraVLTg2
Koelliker Fuse nucleuscontraKF2
Parabrachial nucleus lateral crescentcontraPBlc2
Medial parabrachial nucleus external partcontraMPBE2
Medial parabrachial nucleus medial divisioncontraMPBM2
Gigantocellular reticular nucleuscontraGi3
Medial vestibular nucleus caudal partcontraMVeP2
Inferior vestibular nucleuscontraIVN2
Raphe magnus nucleuscontraRMg3
Raphe obscurus nucleuscontraROb3
Raphe pallidus nucleuscontraRPa3
Rostral part of the ventromedial medulla oblongatacontraRMeObvm-0.5
Caudal ventromedial medulla oblongatacontraMeObcvm-0.5
Ventromedial hypothalamic nucleus ventral partcontraVMHV0.5
Retrochiasmatic areacontraRCh0.5
Cerebral cortex layer 5contraCCL52
Frontal association cortex layer 5contraFrALL53
Forelimb motor cortexcontraFMCx3
Forelimb motor cortex layer 5contraFMCxL53
Hindlimb motor cortex layer 5contraHMCxL53
Primary somatosensory cortexcontraS12
Secondary somatosensory cortex layer 5contraS2L53
Somatomotoric regions layer 5contraSMRL53
Area X L1contraSCL10L1-0.5
Spinal cord layer 5 L1contraSCL5L1-0.5
Spinal cord layer 7 L1contraSCL7L1-0.5
Spinal cord layer 8 L1contraSCL8L1-0.5

Key for weights

ValueWeight
-3 unknown
-2 fibers of passage
-1 not clear
-0.5 exists
0 not present
0.5 very light
1 light / sparse
1.5 light / moderate
2 moderate / dense
2.5 moderate / strong
3 strong
4 very strong





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