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Rat connectome



Spinal cord layers C3 left


Abbreviation
SCLC3
Color       
Superior regionsCervical segment 3

SynonymsAbbr.Language
Spinal cord layers C3SCLC3Eng
Spinal gray matter of cervical segment 3CS3sgmEng

SubregionsSide
Area X C3left
Dorsal horn C3left
Ventral horn C3left

Output to

NameSideAbbr.WeightDetails
MesencephalonipsiMEC0
Central grayipsiCG2
Superior colliculusipsiSC2
Anterior lobeipsiAnL-0.5
Cerebellar lobule 8ipsiCERL8-0.5
Cerebellar lobule 9ipsiCERL9-0.5
Inferior cerebellar peduncleipsiicp-0.5
Restiform body ventromedial partipsirbvm3
Reticular systemipsiRF-0.5
Mesencephalic reticular formationipsiMRF2
Gigantocellular reticular nucleusipsiGi0
Lateral reticular nucleusipsiLRt0
Parvicellular reticular nucleusipsiPCRt1
Ventral part of spinal trigeminal nucleus oral partipsiSp5OV-0.5
Spinal vestibular nucleusipsiSpVe2
Vestibular nucleiipsiVnc-0.5
Medial vestibular nucleus caudal partipsiMVeP2
Medial vestibular nucleus lateral parvocellular partipsiMVeLPC2
Medial vestibular nucleus magnocellular partipsiMVeMC2
Medial vestibular nucleus parvicellular partipsiMVePC-0.5
Lateral vestibular nucleusipsiLVe-0.5
Lateral vestibular nucleus caudal partipsiLVeCa3
Lateral vestibular nucleus rostral partipsiLVeR2
Lateral vestibular nucleus ventrolateral partipsiLVeVL3
Vasodepressor part of caudal midline medulla oblongataipsiCMeObmVd2
Cuneate nucleusipsiCu-0.5
External cuneate nucleusipsiECu-0.5
Nucleus ZipsiZ1
Medial septal nucleusipsiMS1
Substantia innominataipsiSI1
Lateral hypothalamic areaipsiLH1
Rostral part of suprachiasmatic nucleus ventrolateral partipsiSCnVLR1
ThalamusipsiT0
Dorsal thalamusipsiDOR1
Anterior group of the dorsal thalamusipsiATN2
Central medial thalamic nucleusipsiCM0
Centrolateral thalamic nucleusipsiCL2
Parafascicular thalamic nucleusipsiPF1.5
Parafascicular thalamic nucleus medial partipsiPFM2
Posterior thalamic nuclear groupipsiPo2
Posterior thalamic nuclear group dorsocaudal partipsiPoDC1.5
Submedius thalamic nucleusipsiSub2
Ventrobasal complexipsiVB2
Ventral posterolateral thalamic nucleus posterior partipsiVPLP1.5
Medial part of ventral posteromedial thalamic nucleusipsiVPMm1.5
Ventrobasal complex lateral part caudal partipsiVBLC2
Ventrobasal complex lateral part ventral partipsiVBLV2
Ventrobasal complex medial partipsiVBM3
Lateral posterior thalamic nucleusipsiLP3
Mediolateral thalamic nucleusipsiMeLT2
Reticular thalamic nucleus lateral partipsiRtL1.5
Zona incertaipsiZI2
Amygdaloid complexipsiAC1
Globus pallidusipsiGP1
Ventral pallidumipsiVP1
Caudate putamenipsiCPu1
Dorsal striatumipsiCPud1
Ventral striatumipsiCPuv1
Medial geniculate nucleus caudal partipsiMGc2
Medial geniculate nucleus dorsal partipsiMGD0
Medial geniculate nucleus medial partipsiMGM0
Medial geniculate nucleus ventral partipsiMGV0
Cerebellar nucleicontraDCeN-0.5
Inferior cerebellar pedunclecontraicp3
Mesencephalic reticular formationcontraMRF1
Parvicellular reticular nucleuscontraPCRt1
Ventral part of spinal trigeminal nucleus oral partcontraSp5OV-0.5
Spinal vestibular nucleus caudal partcontraSpVeC1
Spinal vestibular nucleus rostral partcontraSpVeR1
Vestibular nucleicontraVnc-0.5
Medial vestibular nucleus caudal partcontraMVeP2
Ventromedial caudal medial vestibular nucleuscontraMVePCa-0.5
Medial vestibular nucleus lateral parvocellular partcontraMVeLPC2
Medial vestibular nucleus magnocellular partcontraMVeMC3
Medial vestibular nucleus parvicellular partcontraMVePC-0.5
Ventromedial area of the rostrocaudal extent of the parvicellular medial vestibular nucleuscontraMVePCrcVM2
Border region between parvocellular medial vestibular nucleus and magnocellular medial vestibular nucleuscontraMVeBor2
Lateral vestibular nucleuscontraLVe3
Inferior olivecontraIO-0.5
Medial septal nucleuscontraMS1
Substantia innominatacontraSI1
Lateral hypothalamic areacontraLH1
Dorsal thalamuscontraDOR2
Anterior group of the dorsal thalamuscontraATN2.5
Central medial thalamic nucleuscontraCM0
Centrolateral thalamic nucleuscontraCL2
Parafascicular thalamic nucleuscontraPF2.5
Submedius thalamic nucleuscontraSub2
Ventrobasal complexcontraVB1
Ventrobasal complex lateral part caudal partcontraVBLC2
Mediolateral thalamic nucleuscontraMeLT2.5
Amygdaloid complexcontraAC1
Globus palliduscontraGP1
Ventral pallidumcontraVP1
Caudate putamencontraCPu1
Dorsal striatumcontraCPud1
Ventral striatumcontraCPuv1
Bulbocavernosus muscleipsiMuscBCV-10
Ischiocavernosus muscleipsiMuscicav-10

Input from

NameSideAbbr.WeightDetails
Red nucleusipsiR1
Superior colliculus deep layersipsiSCd1
Peduncularpontine nucleusipsiPPN-0.5
Substantia nigra A9ipsiSN0
Retrorubral nucleusipsiRR1
Sublaterodorsal tegmental nucleusipsiSLD-0.5
Pedunculopontine tegmental nucleus pars compactaipsiPPNC1
Pedunculopontine tegmental nucleus pars dissipataipsiPPNd3
Interstitial nucleus of CajalipsiInC-0.5
Locus coeruleusipsiLC-0.5
Magnocellular reticular nucleus alpha partipsiNRMCa2
Magnocellular reticular nucleus beta partipsiNRMCb2
Ventral reticular formationipsiVRF-0.5
Nucleus reticular ventralis pars betaipsiRVb2
Nucleus reticularis ventralis pars alphaipsiRVa2
Mesencephalic reticular formationipsiMRF1
Pontine reticular nucleus oral partipsiPnO3
Pontine reticular nucleus caudal partipsiPNC3
Peribrachial regionipsiPBR2
Cuneiforme nucleusipsiCnF-0.5
Koelliker Fuse nucleusipsiKF1
Parabrachial nucleus lateral crescentipsiPBlc1
Medial parabrachial nucleus external partipsiMPBE1
Medial parabrachial nucleus medial divisionipsiMPBM1
Parabrachial nucleus ventral partipsiPBV1
Gigantocellular reticular nucleusipsiGi2
Gigantocellular reticular nucleus alpha partipsiGiA2
Lateral reticular nucleusipsiLRt2
Medullary reticular nucleusipsiMdD2
Subnucleus reticularis dorsalis dorsal partipsiSRDD2
Dorsal-most aspect of the dorsal subnucleus reticularisipsiDmSRD2
Medial subnucleus reticularis ventralisipsiMSRV2
Subcoeruleus nucleusipsiSubC-0.5
Facial nucleus rostral endipsi7ro2
Spinal trigeminal nucleus caudal partipsiSp5C2
Vestibular nucleiipsiVnc1.5
Medial vestibular nucleus caudal partipsiMVeP2
Lateral vestibular nucleusipsiLVe3
Inferior vestibular nucleusipsiIVN2
Caudal raphe nucleiipsiRANc3
Raphe magnus nucleusipsiRMg2
Raphe obscurus nucleusipsiROb2
Raphe obscurus nucleus rostral partipsiRObr2
Raphe pallidus nucleusipsiRPa2
Raphe pallidus nucleus rostral partipsiRParo2
Cuneate nucleus caudal partipsiCuC1
Cuneate nucleus rostral partipsiCuRo0.5
Middle part of cuneate nucleusipsiCuM0.5
GracileipsiGra0.5
Nucleus of BischoffipsiNBi1.5
Nucleus interfascicularis hypoglossiipsiNIFH2
Inferior olive rostral endipsiIOro2
Lateral paragigantocellular nucleusipsiLPGi2
Hypothalamic zonesipsiHYPOz2
Lateral hypothalamic areaipsiLH-0.5
Lateral hypothalamic area rostral partipsiLHro3
Lateral hypothalamic area ventrolateral partipsiLHvL3
Ventromedial hypothalamic nucleusipsiVMH3
Ventromedial hypothalamic nucleus ventral partipsiVMHV1
Arcuate nucleusipsiArc1
Paraventricular nucleus of the hypothalamus magnocellular division posterior magnocellular partipsiPaAMp1
Paraventricular hypothalamic nucleus medial parvicellular part [Periventricular zone anterior region]ipsiPaMP3
Paraventricular hypothalamic nucleus lateral parvocellular partipsiLPPa3
Paraventricular hypothalamic nucleus anterior parvicellular part [Periventricular zone anterior region]ipsiPaAP3
Paraventricular hypothalamic nucleusipsiPa2
Paraventricular hypothalamic nucleus dorsal parvocellular divisionipsiPavPoD3
Paraventricular hypothalamic nucleus periventricular partipsiPapv3
Anterolateral regionipsiMMna2
A11 dopamine cellsipsiA112
Retrochiasmatic areaipsiRCh1
Ventromedial thalamic nucleus dorsolateral partipsiVMDL3
Subparafascicular thalamic nucleusipsiSPF2
Subparafascicular thalamic nucleus dorsal partipsiSPFd2
Subparafascicular thalamic nucleus medial partipsiSPFme2
Subparafascicular thalamic nucleus peripheral partipsiSPFpe1
Subparafascicular thalamic nucleus rostral partipsiSPFr2.5
Subparafascicular thalamic nucleus ventral partipsiSPFv2
Zona incertaipsiZI-0.5
Zona incerta caudal partipsiZIC1
Zona incerta magnocellular partipsiZIMag2
Zona incerta rostral partipsiZIR2
Basal gangliaipsiBG0
PallidumipsiPAL0
Caudate putamenipsiCPu0
Subthalamic nucleus caudal partipsiSThc0.5
Subthalamic nucleus rostral partipsiSThr1
Agranular insular cortexipsiAI1
Primary somatosensory cortexipsiS12
Secondary somatosensory cortexipsiS20
Nucleus dorsalis of ClarkeipsiDHMESdc2
Lateral spinal nucleusipsiMESLn1
Area X L1ipsiSCL10L11
Spinal cord layer 5 L1ipsiSCL5L12
Spinal cord layer 3 L1ipsiSCL3L11
Spinal cord layer 4 L1ipsiSCL4L12
Spinal cord layer 1 L1ipsiSCL1L11
Spinal cord layer 2 L1ipsiSCL2L10.5
Spinal cord layer 7 L1ipsiSCL7L13
Spinal cord layer 8 L1ipsiSCL8L11
Red nucleuscontraR3
Red nucleus dorsomedial partcontraRdm3
Red nucleus rostral partcontraRnRo3
Red nucleus ventrolateral partcontraRveL-0.5
Substantia nigra A9contraSN0
Ventrolateral tegmental areacontraVLTg-0.5
Interposed cerebellar nuclei medial partcontraICNM3
Interposed cerebellar nucleus intermediate partcontraIntim1
Medial cerebellar nucleus intermediate partcontraMedim1
Medial cerebellar nucleus lateral partcontraMedL-0.5
Between nucleus medialis and interposed nucleuscontraBMedin-0.5
Koelliker Fuse nucleuscontraKF2
Parabrachial nucleus lateral crescentcontraPBlc2
Medial parabrachial nucleus external partcontraMPBE2
Medial parabrachial nucleus medial divisioncontraMPBM2
Gigantocellular reticular nucleuscontraGi2
Medullary reticular nucleuscontraMdD1
Medial vestibular nucleus caudal partcontraMVeP2
Inferior vestibular nucleuscontraIVN2
Hypothalamic zonescontraHYPOz1
Ventromedial hypothalamic nucleus ventral partcontraVMHV0.5
Retrochiasmatic areacontraRCh0.5
Basal gangliacontraBG0
PallidumcontraPAL0
Caudate putamencontraCPu0
Subthalamic nucleus caudal partcontraSThc1
Subthalamic nucleus rostral partcontraSThr2
Cerebral cortex layer 5contraCCL51
Primary somatosensory cortexcontraS12
Nucleus dorsalis of ClarkecontraDHMESdc-0.5
Lateral spinal nucleuscontraMESLn-0.5
Area X L1contraSCL10L1-0.5
Spinal cord layer 5 L1contraSCL5L1-0.5
Spinal cord layer 3 L1contraSCL3L1-0.5
Spinal cord layer 4 L1contraSCL4L1-0.5
Spinal cord layer 1 L1contraSCL1L1-0.5
Spinal cord layer 2 L1contraSCL2L1-0.5
Spinal cord layer 7 L1contraSCL7L1-0.5
Spinal cord layer 8 L1contraSCL8L1-0.5
LungipsiOrgsLung0

Key for weights

ValueWeight
-3 unknown
-2 fibers of passage
-1 not clear
-0.5 exists
0 not present
0.5 very light
1 light / sparse
1.5 light / moderate
2 moderate / dense
2.5 moderate / strong
3 strong
4 very strong





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