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Rat connectome



Orbital cortex right


Abbreviation
OrC
Color       
Superior regionsAnterior medial frontal cortex

SynonymsAbbr.Language
Orbital agranular cortex  
Orbital areaORBEng
Orbital area Eng
Orbital cortexOrCEng
Orbital region Eng

SubregionsSide
Anterior orbital cortexright
Dorsolateral orbital cortexright
Lateral orbital cortexright
Medial orbital cortexright
Orbital cortex layersright
Posterior orbital cortexright
Ventral orbital cortexright
Ventrolateral orbital arearight
Ventromedial orbital cortexright
Caudal orbital cortexright
Rostral orbital cortexright
Adjacent neocortical region to lateral orbital and agranular insular cortexright
Rostromedial orbital arearight
Mid-anterior orbital cortexright

Output to

NameSideAbbr.WeightDetails
Nuclei of the lateral lemniscuscontraNLL0
Central tegmental field dorsal partcontraTGACd1
Laterodorsal tegmental nucleuscontraLDTg2
Ventral tegmental nucleuscontraVTg1.5
Dorsal tegmental nucleuscontraDTg1
Pedunculopontine tegmental nucleuscontraPPTg0
Locus coeruleuscontraLC2
Nucleus incertus pars dissipatacontraNId1
Medullary reticular nucleus dorsal partcontraMdDd2
Dorsomedial portion of the spinal trigeminal nucleus oral partcontraSp5ODM0
Ventrolateral part of spinal trigeminal nucleus oral partcontraSp5OVL0
Lateral part of lamina 1 of the trigeminal subnucleus caudaliscontra5SSCL1L0
Lateral part of lamina 2 of the trigeminal subnucleus caudaliscontra5SSCL2L0
Trigeminal subnucleus caudalis layers rostro-dorsomedial part layer 1contra5SSCrdmL10
Trigeminal subnucleus caudalis layers rostro-dorsomedial part layer 2contra5SSCrdmL20
Trigeminal subnucleus caudalis layers caudal part layer 1contra5SSCCaL10
Trigeminal subnucleus caudalis layers caudal part layer 2contra5SSCCaL20
Mediodorsal thalamic nucleuscontraMD2
HabenulacontraHAB0
Accumbens nucleus corecontraAcbC1.5
Anterior piriform cortexcontraAPIRC1
Orbital cortexcontraOrC2
Nuclei of the lateral lemniscusipsiNLL0
Oculomotor systemipsiOCS2.5
Ventral periaqueductal grayipsiVPAG2.5
Central tegmental field dorsal partipsiTGACd1
Substantia nigra A9ipsiSN3
Ventral tegmental area A10ipsiVTA-0.5
Interfascicular nucleusipsiIF-0.5
Paranigral nucleusipsiPN-0.5
Laterodorsal tegmental nucleusipsiLDTg2.5
Ventral tegmental nucleusipsiVTg3
Dorsal tegmental nucleusipsiDTg2
Pedunculopontine tegmental nucleusipsiPPTg0
Interstitial nucleus of CajalipsiInC2.5
FlocculusipsiFl1
Locus coeruleusipsiLC4
Dorsomedial portion of the spinal trigeminal nucleus oral partipsiSp5ODM0
Ventrolateral part of spinal trigeminal nucleus oral partipsiSp5OVL0
Lateral part of lamina 1 of the trigeminal subnucleus caudalisipsi5SSCL1L0
Lateral part of lamina 2 of the trigeminal subnucleus caudalisipsi5SSCL2L0
Trigeminal subnucleus caudalis layers rostro-dorsomedial part layer 1ipsi5SSCrdmL10
Trigeminal subnucleus caudalis layers rostro-dorsomedial part layer 2ipsi5SSCrdmL20
Trigeminal subnucleus caudalis layers caudal part layer 1ipsi5SSCCaL10
Trigeminal subnucleus caudalis layers caudal part layer 2ipsi5SSCCaL20
Median raphe nucleusipsiMnR-0.5
Basal forebrainipsiBAF-0.5
Medial septal nucleusipsiMS3
Basal nucleus MeynertipsiB2
Substantia innominataipsiSI3
Lateral hypothalamic areaipsiLH-0.5
Arcuate nucleusipsiArc2
Anteromedial thalamic nucleusipsiAM-0.5
Anteroventral thalamic nucleusipsiAV0.5
Central medial thalamic nucleusipsiCM2
Lateral group of the dorsal thalamusipsiLAT2
Mediodorsal thalamic nucleusipsiMD1
Mediodorsal thalamic nucleus medial partipsiMDM-10
Midline group of the dorsal thalamusipsiMTN1
Paratenial thalamic nucleusipsiPT-0.5
Paraventricular thalamic nucleus anterior partipsiPVA1
Paraventricular thalamic nucleus posterior partipsiPVP1
Ventrolateral thalamic nucleusipsiVL2
Ventrobasal complex anterior partipsiVBa2
Reticular thalamic nucleusipsiRt-0.5
Reticular thalamic nucleus rostral partipsiRtr3
Zona incertaipsiZI1
HabenulaipsiHAB1
Bed nucleus of the stria terminalis dorsolateral partipsiBSTDL0.5
Bed nucleus of the stria terminalis medial divisionipsiBSTM0.5
Central amygdaloid nucleus lateral divisionipsiCeL0.5
Central amygdaloid nucleus medial divisionipsiCeM0.5
Interstitial nucleus of the posterior limb of the anterior commissure caudal partipsiIPACc1
Globus pallidusipsiGP2
Medial globus pallidusipsiMGP2
Ventral pallidumipsiVP2
Accumbens nucleusipsiAc2
Accumbens nucleus coreipsiAcbC3
Accumbens nucleus shellipsiAcbSh2
Lateral accumbens shellipsiAcbShl2
Midrostrocaudal level of the accumbens nucleus shellipsiAcbShmrc0
Caudate putamenipsiCPu-0.5
Ventromedial striatum rostral partipsiCPuvmr3
Piriform cortexipsiPir1
Midrostrocaudal part of the retrosplenial dysgranular cortexipsiRSdysmrc-0.5
Retrosplenial granular cortex c regionipsiRSGc1
Infralimbic cortexipsiIL-10
Frontal association cortexipsiFrA-0.5
Agranular insular cortexipsiAI-0.5
Rostral motor areaipsiRMA3
Medial prefrontal cortexipsimPFC2
Orbital cortexipsiOrC3

Input from

NameSideAbbr.WeightDetails
Mediodorsal thalamic nucleuscontraMD2
Piriform cortexcontraPir-0.5
Piriform cortex layer 2contraPirL21
Piriform cortex layer 3contraPirL31
Cingulate cortexcontraCg-0.5
Anterior cingulate cortex layer 2contraACCL20.5
Anterior cingulate cortex layer 3contraACCL30.5
Cingulate cortex area 1contraCg11
Cingulate cortex area 1 layer 2contraCg1L21
Cingulate cortex area 1 layer 3contraCg1L31
Cingulate cortex area 2contraCg21
Cingulate area 2 layer 2contraCg2L21
Cingulate area 2 layer 3contraCG2L31
Frontal association cortexcontraFrA-0.5
Frontal cortex area 1 layer 6contraFr1L61
Frontal cortex area 1 layer 2contraFr1L21
Frontal cortex area 1 layer 3contraFr1L31
Frontal cortex area 2 layer 3contraFr2L31.5
Frontal cortex area 2 layer 2contraFr2L21.5
Frontal cortex area 2 layer 6contraFr2L61.5
Perirhinal cortex anterior portioncontraPRha0.5
Primary visual cortexcontraV10
Secondary visual cortex medial areacontraV2M1
Secondary visual cortex medial area layer 3contraV2ML30.5
Secondary visual cortex medial area layer 2contraV2ML20.5
Orbital cortexcontraOrC2
Lateral orbital cortexcontraLO-0.5
Medial orbital cortexcontraMO-0.5
Ventrolateral orbital areacontraVLO-0.5
Lateral spinal nucleus C1contraLSpC10.5
Dorsal horn C1contraDHC10.5
Ventral horn C1contraVHC10.5
Lateral spinal nucleus C2contraLSpC20.5
Dorsal horn C2contraDHC20.5
Ventral horn C2contraVHC20.5
Lateral spinal nucleus C4contraLSpC40.5
Dorsal horn C4contraDHC40.5
Lateral spinal nucleus C5contraLSpC50.5
Dorsal horn C5contraDHC50.5
Dorsal horn C7contraDHC70.5
Dorsal horn C8contraDHC80.5
Area X T4contraSCL10T40.5
Dorsal horn T6contraDHT60.5
Area X T8contraSCL10T80.5
Dorsal horn T8contraDHT80.5
Area X T12contraSCL10T120.5
Dorsal horn T12contraDHT121
Lateral spinal nucleus L1contraLSpL10.5
Area X L1contraSCL10L10.5
Ventral horn L1contraVHL10.5
Lateral spinal nucleus L2contraLSpL20.5
Area X L2contraSCL10L20.5
Ventral horn L2contraVHL20.5
Lateral spinal nucleus L3contraLSpL30.5
Area X L3contraSCL10L30.5
Ventral horn L3contraVHL30.5
Edinger Westphal nucleusipsiEW0.5
Dorsal raphe nucleus rostral partipsiDRr1.5
Rostral linear nucleus of the rapheipsiRLi1
Caudal endopiriform regionipsiCEn-0.5
Central endopiriform systemipsiCEnN-0.5
Dorsal endopiriform nucleusipsiDEn-0.5
Rostral endopiriform regionipsiREn-0.5
Tenia tectaipsiTT1
Lateral hypothalamic areaipsiLH1
Lateral hypothalamic area perifornical partipsiPFx1
Terete hypothalamic nucleusipsiTe-0.5
Dorsomedial hypothalamic nucleus [Medial zone]ipsiDM1
Dorsomedial hypothalamic nucleus dorsomedial partipsiDMDM1
Supramammillar nucleus lateral part lateral subpartipsiSuMLL0
Supramammillar nucleus lateral part medial subpartipsiSuMLM0
Supramammillar nucleus medial partipsiSuMM0
Rhomboid thalamic nucleusipsiRh-0.5
Mediodorsal thalamic nucleusipsiMD2
Mediodorsal thalamic nucleus central partipsiMDC-0.5
Mediodorsal thalamic nucleus medial partipsiMDM-0.5
Submedius thalamic nucleusipsiSub-0.5
Reuniens thalamic nucleusipsiRe-0.5
Ventrolateral thalamic nucleusipsiVL-0.5
Ventromedial thalamic nucleusipsiVM-0.5
Caudomedial lateral posterior thalamic nucleusipsiLPcm0.5
Lateral posterior thalamic nucleus lateral partipsiLPTL1
Rostromedial lateral posterior thalamic nucleusipsiLPrm1
Subparafascicular thalamic nucleusipsiSPF1
Subparafascicular thalamic nucleus rostral partipsiSPFr1
Ventral medial nucleus of the thalamusipsiVMT-0.5
Amygdaloid complexipsiAC3
ClaustrumipsiCl3
Field CA1 of hippocampusipsiCA11
Field CA1 of hippocampus rostral partipsiCA1r1
Entorhinal cortexipsiEnt1
Lateral entorhinal cortexipsiLEnt2
Entorhinal cortex layer 3ipsiEntL31
Entorhinal cortex layer 6ipsiEntL61
Entorhinal cortex layer 2ipsiEntL21
Piriform cortexipsiPir2
Piriform cortex layer 2ipsiPirL21.5
Piriform cortex layer 3ipsiPirL31.5
Retrosplenial agranular cortexipsiRSA1
Retrosplenial agranular cortex layer 2ipsiRSAL20.5
Retrosplenial agranular cortex layer 3ipsiRSAL30.5
Midrostrocaudal part of the retrosplenial dysgranular cortexipsiRSdysmrc1
Cingulate cortexipsiCg-0.5
Anterior cingulate cortex layer 2ipsiACCL20.5
Anterior cingulate cortex layer 3ipsiACCL30.5
Cingulate cortex area 1ipsiCg13
Cingulate cortex area 1 caudal partipsiCg1c1.5
Cingulate cortex area 1 layer 2ipsiCg1L21.5
Cingulate cortex area 1 layer 3ipsiCg1L31.5
Cingulate cortex area 2ipsiCg23
Cingulate cortex area 2 caudal partipsiCg2c1.5
Cingulate area 2 layer 2ipsiCg2L21.5
Cingulate area 2 layer 3ipsiCG2L31.5
Prelimbic cortex dorsal partipsiPrLd1
Prelimbic cortex ventral partipsiPrLv0.5
Infralimbic cortexipsiIL1
Frontal association cortexipsiFrA-0.5
Frontal cortex area 1ipsiFr12
Frontal cortex area 1 layer 6ipsiFr1L62
Frontal cortex area 1 layer 2ipsiFr1L22
Frontal cortex area 1 layer 3ipsiFr1L32
Frontal cortex area 2ipsiFr22
Frontal cortex area 2 layer 3ipsiFr2L33
Frontal cortex area 2 layer 2ipsiFr2L23
Frontal cortex area 2 layer 6ipsiFr2L63
Agranular insular cortexipsiAI-0.5
Perirhinal cortexipsiA352
Perirhinal cortex anterior portionipsiPRha1
Perirhinal cortex anterior portion layer 3ipsiPRhaL33
Perirhinal cortex layer 2ipsiA35L22
Perirhinal cortex layer 3ipsiA35L32
Perirhinal cortex layer 6ipsiA35L62
Primary somatosensory cortex forelimb regionipsiS1FL-0.5
Primary somatosensory cortex hindlimb regionipsiS1HL-0.5
Primary visual cortexipsiV10
Secondary visual cortex medial areaipsiV2M2
Secondary visual cortex medial area layer 3ipsiV2ML31.5
Secondary visual cortex medial area layer 2ipsiV2ML21.5
Secondary visual cortex medial area layer 6ipsiV2ML61.5
Secondary visual cortex lateral areaipsiV2L1
Secondary visual cortex lateral area layer 2ipsiV2LL21
Secondary visual cortex lateral area layer 3ipsiV2LL31
Secondary visual cortex lateral area layer 6ipsiV2LL61
Orbital cortexipsiOrC3
Lateral orbital cortexipsiLO1
Medial orbital cortexipsiMO2
Ventral orbital cortexipsiVO2
Ventrolateral orbital areaipsiVLO2
Lateral spinal nucleus C1ipsiLSpC10.5
Dorsal horn C1ipsiDHC10.5
Ventral horn C1ipsiVHC10.5
Lateral spinal nucleus C2ipsiLSpC20.5
Dorsal horn C2ipsiDHC20.5
Ventral horn C2ipsiVHC20.5
Lateral spinal nucleus C4ipsiLSpC40.5
Dorsal horn C4ipsiDHC40.5
Lateral spinal nucleus C5ipsiLSpC50.5
Dorsal horn C5ipsiDHC50.5
Lateral spinal nucleus C7ipsiLSpC70.5
Lateral spinal nucleus C8ipsiLSpC80.5
Dorsal horn T6ipsiDHT60.5
Lateral spinal nucleus T8ipsiLSpT80.5
Dorsal horn T8ipsiDHT80.5
Dorsal horn T12ipsiDHT120.5
Lateral spinal nucleus L1ipsiLSpL10.5
Area X L1ipsiSCL10L10.5
Lateral spinal nucleus L2ipsiLSpL20.5
Area X L2ipsiSCL10L20.5
Lateral spinal nucleus L3ipsiLSpL30.5
Area X L3ipsiSCL10L30.5

Key for weights

ValueWeight
-3 unknown
-2 fibers of passage
-1 not clear
-0.5 exists
0 not present
0.5 very light
1 light / sparse
1.5 light / moderate
2 moderate / dense
2.5 moderate / strong
3 strong
4 very strong





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