University of Rostock

Department of Anatomy

Neuroscience Group

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Rat connectome



Substantia innominata dorsal part left


Abbreviation
SID
Color       
Superior regionsSubstantia innominata

SynonymsAbbr.Language
Substantia innominata dorsal partSIDEng
Substantia innominata dorsal division  
 SIdEng
Dorsal substantia innominata  

SubregionsSide
Dorsalmost substantia innominataleft

Output to

NameSideAbbr.WeightDetails
Central grayipsiCG-0.5
Nucleus of DarkschewitschipsiDk0
Oculomotor nucleusipsi33
Tegmental areaipsiTGA-0.5
Substantia nigra compact partipsiSNC-0.5
Ventral tegmental area A10ipsiVTA2
Peripeduncular areaipsiPPA-0.5
Pedunculopontine tegmental nucleusipsiPPTg-0.5
Edinger Westphal nucleusipsiEW3
Locus coeruleusipsiLC-0.5
Parabrachial nucleusipsiPB-0.5
Lateral parabrachial nucleusipsiLPB-0.5
Parabrachial nucleus medialipsiPBnMe-0.5
Subcoeruleus nucleusipsiSubC-0.5
Nucleus of the solitary tractipsiSol0.5
Dorsal motor nucleus of vagusipsi100.5
Dorsal raphe nucleusipsiDR-0.5
Linear nucleus of the rapheipsiLIR-0.5
Basal forebrainipsiBAF-0.5
Nucleus of the horizontal limb of the diagonal bandipsiHDB1
Lateral preoptic areaipsiLPO-0.5
Lateral hypothalamic areaipsiLH-0.5
Lateral hypothalamic area perifornical partipsiPFx1
Anterior hypothalamic areaipsiAHA-0.5
Dorsal hypothalamic areaipsiDA-0.5
Posterior hypothalamic areaipsiPHA-0.5
Paraventricular hypothalamic nucleusipsiPa-0.5
Central medial thalamic nucleusipsiCM1
Centrolateral thalamic nucleusipsiCL2.5
Paracentral thalamic nucleusipsiPC2.5
Rhomboid thalamic nucleusipsiRh1
Mediodorsal thalamic nucleusipsiMD2
Mediodorsal thalamic nucleus lateral partipsiMDL2.5
Mediodorsal thalamic nucleus medial partipsiMDM3
Reuniens thalamic nucleusipsiRe1
Ventral posteromedial thalamic nucleus parvicellular partipsiVPMpc-0.5
Reticular thalamic nucleusipsiRt-0.5
Subparafascicular thalamic nucleus parvicellular partipsiSPFp-0.5
Lateral habenular nucleusipsiLHb-0.5
Lateral habenular nucleus lateral partipsiLHbL-0.5
Lateral habenular nucleus medial partipsiLHbM-0.5
Basolateral amygdaloid nucleusipsiBL3
Lateral amygdaloid nucleusipsiLA2.5
Bed nucleus of the stria terminalis lateral divisionipsiBSTL-0.5
Central extended amygdala groupipsiCEXA-0.5
Central amygdaloid nucleusipsiCe3
Central amygdaloid nucleus medial divisionipsiCeM3
Anterior amygdaloid areaipsiAA-0.5
Cortical amygdaloid nucleusipsiCAn1
Nucleus of the lateral olfactory tractipsiLOT0
Medial amygdaloid nucleusipsiMe1
Medial amygdaloid nucleus rostral partipsiMeRo3
Ventral pallidumipsiVP1
Ventral striatumipsiCPuv1
Entorhinal cortexipsiEnt-0.5
Piriform cortexipsiPir-0.5
Rostral part of the cingulate cortexipsiRCg-0.5
Prelimbic cortexipsiPrL-0.5
Infralimbic cortexipsiIL-0.5
Agranular insular cortexipsiAI-0.5
Granular insular cortexipsiGI-0.5
Perirhinal cortexipsiA35-0.5
Olfactory bulb A16ipsiMOB-0.5

Input from

NameSideAbbr.WeightDetails
Central grayipsiCG1
Tectospinal tractipsits-2
Substantia nigra compact partipsiSNC1
Ventral tegmental area A10ipsiVTA2
Peripeduncular areaipsiPPA1
Decussation of the brachium conjunctivumipsidbcon3
Locus coeruleusipsiLC1
Pontine nucleiipsiPn1
Pontine reticular nucleus oral partipsiPnO2
Parabrachial nucleusipsiPB3
Lateral parabrachial nucleusipsiLPB3
Parabrachial nucleus central lateral partipsiPBCeL1
Parabrachial nucleus external divison lateral partipsiPBeDL1
Parabrachial nucleus medialipsiPBnMe2
Parabrachial nucleus medial crescentipsiPBmc2
Parabrachial nucleus waist partipsiPBW2
Subcoeruleus nucleusipsiSubC-0.5
Nucleus of the solitary tractipsiSol-0.5
Dorsal raphe nucleusipsiDR1
Midrostrocaudal levels through the dorsal raphe nucleusipsiDRmirc-0.5
Linear nucleus of the rapheipsiLIR1
Substantia innominata ventral partipsiSIV1
Lateral preoptic areaipsiLPO1
Lateralmost lateral preoptic areaipsiLPOLM1
Medial preoptic areaipsiMPA-0.5
Lateral hypothalamic area [Region of tuber cinereum]ipsiLHTUC1
Lateral hypothalamic areaipsiLH1
Lateral hypothalamic area anteriorposterior partipsiLHapo2
Lateral hypothalamic area caudal part lateral aspectipsiLHcL2
Most medial lateral hypothalamic areaipsiLHAmm-0.5
Lateral hypothalamic area perifornical partipsiPFx-0.5
Anterior hypothalamic areaipsiAHA-0.5
Dorsomedial hypothalamic nucleus [Medial zone]ipsiDM1
Posterior hypothalamic areaipsiPHA1
Ventromedial hypothalamic nucleusipsiVMH-0.5
Arcuate nucleusipsiArc-0.5
Dorsomedial hypothalamic nucleus [Periventricular zone]ipsiDMpz1
Paraventricular hypothalamic nucleusipsiPa-0.5
Premammillary nucleusipsiPMAN-0.5
Supramammillar nucleusipsiSuM1
A8 dopamine cells retrorubral groupipsiRRF1
Central medial thalamic nucleusipsiCM-0.5
Rhomboid thalamic nucleusipsiRh-0.5
Midline group of the dorsal thalamusipsiMTN-0.5
Paratenial thalamic nucleusipsiPT-0.5
Reuniens thalamic nucleusipsiRe-0.5
Lateral posterior thalamic nucleus medial partipsiLPM1
Subparafascicular thalamic nucleus parvicellular partipsiSPFp-0.5
Zona incertaipsiZI2
Basolateral amygdaloid nucleusipsiBL1
Anterior basolateral nucleusipsiBLA0
Ventral basolateral nucleusipsiBLV3
Basomedial amygdaloid nucleusipsiBM1
Anterior basomedial nucleusipsiBMA-0.5
Bed nucleus of the stria terminalis lateral divisionipsiBSTL2
Bed nucleus of the stria terminalis medial divisionipsiBSTM3
Bed nucleus of the stria terminalis posterior divisionipsiBSTP3
Central amygdaloid nucleusipsiCe2
Lateral capsular subdivision of the central nucleus of the amygdalaipsiCeLac4
Rostral pole of the Lateral capsular subdivision of the central nucleus of the amygdalaipsiCeLacrp4
Caudal half of the lateral capsular subdivision of the central nucleus of the amygdalaipsiCeLaccH3
Central amygdaloid nucleus lateral divisionipsiCeL3
Central amygdaloid nucleus medial divisionipsiCeM-0.5
Central amygdaloid nucleus medial division ventral partipsiCeMv3
Amygdalopiriform transition areaipsiAPir3
Anterior amygdaloid areaipsiAA3
Cortical amygdaloid nucleusipsiCAn3
Anterior cortical amygdaloid nucleusipsiACo-0.5
Medial amygdaloid nucleusipsiMe3
Ventral pallidumipsiVP1
Ventral pocket of striatumipsiCPuvp-0.5
Fundus of the striatumipsiFS2
Subthalamic nucleusipsiSTh4
Parasubthalamic nucleusipsiPSTh-0.5
Piriform cortexipsiPir-0.5
Prelimbic cortexipsiPrL2
Insular cortexipsiICX-0.5
Agranular insular cortex dorsal partipsiAID1
Agranular insular cortex rostral posterior partipsirAIp1
Agranular insular cortex posterior partipsiAIP1
Dysgranular insular cortexipsiDI1
Most ventral insular cortexipsiMVICX-0.5
Perirhinal cortexipsiA35-0.5
Medial prefrontal cortexipsimPFC-0.5
Lateral spinal nucleus C7ipsiLSpC71
Area X C7ipsiSCL10C70.5
Spinal cord layer 5 C7ipsiSCL5C71
Spinal cord layer 6 C7ipsiSCL6C70.5
Spinal cord layer 3 C7ipsiSCL3C71
Spinal cord layer 4 C7ipsiSCL4C71
Spinal cord layer 1 C7ipsiSCL1C70.5
Spinal cord layer 2 C7ipsiSCL2C70.5
Spinal cord layer 7 C7ipsiSCL7C70.5
Parabrachial nucleus medialcontraPBnMe1
Parabrachial nucleus medial crescentcontraPBmc1
Parabrachial nucleus waist partcontraPBW1
Lateral spinal nucleus C7contraLSpC70.5
Area X C7contraSCL10C70.5
Spinal cord layer 5 C7contraSCL5C71
Spinal cord layer 6 C7contraSCL6C70.5
Spinal cord layer 3 C7contraSCL3C71
Spinal cord layer 4 C7contraSCL4C71
Spinal cord layer 7 C7contraSCL7C70.5

Key for weights

ValueWeight
-3 unknown
-2 fibers of passage
-1 not clear
-0.5 exists
0 not present
0.5 very light
1 light / sparse
1.5 light / moderate
2 moderate / dense
2.5 moderate / strong
3 strong
4 very strong





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