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Rat connectome



Amygdalopiriform transition area left


Abbreviation
APir
Color       
Superior regionsOlfactory amygdala

SynonymsAbbr.Language
 PA 
 PAA 
Cortico amygdaloid transition area  
Piriform amygdaloid area  
Piriform-amygdaloid areaPAA 
Amygdalohippocampal transition area  
Posterior part of the medial nucleus  
Posteromedial basal nucleus  
Posterior nucleus of the amygdala Eng
Area TR Eng
Piriform-amygdaloid area Eng
Amigdalopiriform transition Eng
Amygdalo hippocampal area Eng
Area interposed between area entorhinalis caudally and the piriform cortex and the posterior pole of theamygdala rostrally Eng
Amygdalopiriform cortex Eng
Piriform transition area Eng
Amygdaloid piriform transition area Eng
Amygdalopiriform transition areaAPirEng
Piriform amygdalar areaPAAEng
Amygdaloid-piriform area Eng
Piriform-amygdala transition areaPAAEng
Amygdalopiriform transition areaAPirEng

SubregionsSide
Amygdalopiriform transition area anterolateral partleft
Amygdalopiriform transition area lateral partleft
Amygdalopiriform transition area medial partleft
Amygdalopiriform transition area posteromedial partleft
Amygdalopiriform transition area rostral partleft
Amygdalopiriform transition area ventral partleft
Amygdalopiriform transition area layersleft

Output to

NameSideAbbr.WeightDetails
Nuclei of the lateral lemniscusipsiNLL1
Central tegmental field dorsal partipsiTGACd1
Laterodorsal tegmental nucleusipsiLDTg0
Dorsal tegmental nucleusipsiDTg0
Pedunculopontine tegmental nucleusipsiPPTg0
Endopiriform systemipsiEnN-1
Dorsal endopiriform nucleusipsiDEn3
Ventral endopiriform nucleusipsiVEn3
Substantia innominata dorsal partipsiSID3
Substantia innominata ventral partipsiSIV2
Medial preoptic areaipsiMPA0
Medial preoptic nucleus lateral partipsiMPOL-0.5
Tenia tectaipsiTT-0.5
Lateral hypothalamic areaipsiLH0
Lateral hypothalamic area motor related juxtaventromedial region dorsal zoneipsiLHAjvd0
Lateral hypothalamic area motor related juxtaventromedial region ventral zoneipsiLHAjvv0
Lateral hypothalamic area ventromedial partipsiLHvm0
Tuberal nucleusipsiTU0.5
Medial division of the hypothalamusipsiMdH1
Anteroventral periventricular nucleus [Anterior hypothalamic area]ipsiAVPe0
Anterior hypothalamic nucleusipsiAHn0.5
Dorsomedial hypothalamic nucleus [Medial zone]ipsiDM-0.5
Posterior hypothalamic nucleusipsiPH-0.5
Subparaventricular zoneipsiSuPZ0
Ventromedial hypothalamic nucleusipsiVMH-0.5
Ventromedial hypothalamic nucleus dorsomedial partipsiVMHDM1
Ventromedial hypothalamic nucleus ventrolateral partipsiVMHVL0.5
Mediobasal hypothalamus anterior partipsiMeHypoAnt0.5
Mediobasal hypothalamus posterior partipsiMeHypoP1
Anterior periventricular nucleusipsiPeA0
Arcuate nucleusipsiArc0
Suprachiasmatic nucleusipsiSCh3
Medial mammillary nucleusipsiMMn0
Premammillary nucleus dorsal partipsiPMD0
Premammillary nucleus ventral partipsiPMV1
Supramammillar nucleusipsiSuM0
Mediodorsal thalamic nucleus central partipsiMDC1
Mediodorsal thalamic nucleus medial partipsiMDM1
Reunienes thalamic nucleus rostromedial divisionipsiRerm1
Reuniens thalamic nucleus rostrolateral divisionipsiRerl-3
Basal nucleus parvicellular part caudolateral regionipsiBpccl-0.5
Basolateral amygdaloid nucleusipsiBL3
Anterior basolateral nucleusipsiBLA0
Posterior basolateral nucleusipsiBLP1.5
Anterior basomedial nucleusipsiBMA1
Posterior basomedial nucleusipsiBMP1.5
Lateral amygdaloid nucleusipsiLA2
Bed nucleus of the stria terminalisipsiBST4
Bed nucleus of the stria terminalis anterior division anterolateral nucleusipsiBSTal-0.5
Bed nucleus of the stria terminalis anterior division dorsomedial nucleusipsiBSTdm1
Bed nucleus of the stria terminalis anterior division subcommissural partipsiBSTAsc0
Bed nucleus of the stria terminalis anterior dorsal areaipsiBSTAD2
Bed nucleus of the stria terminalis anterior lateral areaipsiBSTAL2
Bed nucleus of the stria terminalis anterior medial partipsiBSTAM-0.5
Bed nucleus of the stria terminalis fusiform partipsiFu0
Bed nucleus of the stria terminalis magnocellular nucleusipsiBSTmc0
Bed nucleus of the stria terminalis oval nucleusipsiBSTo0
Bed nucleus of the stria terminalis rhomboid nucleusipsiBSTrh0
Bed nucleus of the stria terminalis intraamygdaloid divisionipsiBSTIA1
Bed nucleus of the stria terminalis juxtacapsular partipsiBSTj0
Bed nucleus of the stria terminalis lateral divisionipsiBSTL-1
Bed nucleus of the stria terminalis lateral division dorsal partipsiBSTLD3
Bed nucleus of the stria terminalis lateral division juxtacapsular partipsiBSTLJ3
Bed nucleus of the stria terminalis lateral division posterior partipsiBSTLP3
Bed nucleus of the stria terminalis lateral division ventral partipsiBSTLV3
Bed nucleus of the stria terminalis medial divisionipsiBSTM-1
Bed nucleus of the stria terminalis medial division posterolateral partipsiBSTMPL1
Bed nucleus of the stria terminalis posterior divisionipsiBSTP2
Bed nucleus of the stria terminalis dorsal nucleusipsiBSTd0
Bed nucleus of the stria terminalis interfascicular nucleusipsiBSTif3
Bed nucleus of the stria terminalis posterior division ventral nucleusipsiBSTV0
Bed nucleus of the stria terminalis principal nucleusipsiBSTpr0
Bed nucleus of the stria terminalis transverse nucleusipsiBSTt3
Bed nucleus of the stria terminalis supracapsular partipsiBSTS2
Supracapsular bed nucleus of the stria terminalis lateral partipsiBSTSl1.5
Central extended amygdala groupipsiCEXA2
Central amygdaloid nucleusipsiCe4
Central amygdaloid nucleus intermediate divisionipsiCeI2
Central amygdaloid nucleus lateral divisionipsiCeL3
Central amygdaloid nucleus lateral division capsular partipsiCeC3
Central amygdaloid nucleus medial divisionipsiCeM2
Interstitial nucleus of the posterior limb of the anterior commissureipsiIPAC3
Interstitial nucleus of the posterior limb of the anterior commissure medial partipsiIPACM2
Lateral supracapsular division of the bed nucleus of the stria terminalisipsiBSTSl2
Central division of sublenticular extended amygdalaipsiSLEAc-0.5
Medial division of the sublenticular extended amygdalaipsiSLEAm2
Amygdalopiriform transition areaipsiAPir-3
Anterior amygdaloid areaipsiAA2
Posterior amygdaloid nucleusipsiCOAp0
Posterior amygdaloid nucleus medial partipsiCOApm3
Posterolateral cortical nucleusipsiPLCo2.5
Nucleus of the lateral olfactory tractipsiLOT3
Medial extended amygdalaipsiMEXA-1
Medial amygdaloid nucleusipsiMe1
Medial amygdaloid nucleus anterodorsal partipsiMeAD2
Medial amygdaloid nucleus posterodorsal partipsiMePD2
Medial amygdaloid nucleus posteroventral partipsiMePV2
Bed nucleus of the accessory olfactory tractipsiBAOT1
Posteromedial cortical nucleusipsiPMCo3
Amygdalostriatal transition areaipsiAStr1
ClaustrumipsiCl0
Lateral globus pallidusipsiLGP2
Medial globus pallidusipsiMGP2
Accumbens nucleus coreipsiAcbC3
Accumbens nucleus shellipsiAcbSh3
Cone like caudal dorsomedial extremity of the accumbens shellipsiAcbShco-1
Medial accumbens shellipsiAcbShm-1
Medial accumbens shell posterodorsal regionipsiAcbShmPD-1
Posteromedial accumbensipsiAcbPM-0.5
Septal pole of the accumbens nucleusipsiAcSe-0.5
Ventral striatumipsiCPuv-1
HippocampusipsiHIPP-0.5
Hippocampal regionsipsiHIPPR-0.5
Hippocampal septalipsiHIPPs3
Dentate gyrusipsiDG0
Ammon hornipsiAmH-1
Field CA1 of hippocampusipsiCA1-0.5
Field CA1 of hippocampus dorsalipsiCA1d0
Field CA1 of hippocampus layer stratum lacunosumipsiCA1L6sla3
Most temporal region of CA1 pyramidal layeripsiCA1mtLpy0.5
Field CA1 of hippocampus ventral partipsiCA1v2
Field CA1 of hippocampus ventral layer stratum oriensipsiCA1vL2so0.5
Field CA1 of hippocampus ventral layer stratum pyramidaleipsiCA1vL3sp0.5
Field CA1 of hippocampus ventral layer stratum radiatumipsiCA1vL5sr0.5
Field CA1 of hippocampus ventral stratum lacunosum-moleculareipsiCA1vLM1
Ventral two-thirds of CA1 stratum lacunosum moleculareipsiCA1vttLM1
Field CA2 of hippocampusipsiCA20
Field CA3 of hippocampusipsiCA31
Field CA3 of hippocampus layer stratum lacunosumipsiCA3L6sla2.5
Field CA3 of hippocampus ventral layer stratum oriensipsiCA3vL2so1
Field CA3 of hippocampus ventral stratum lacunosum-moleculareipsiCA3vLM1
SubiculumipsiS-0.5
Subiculum stratum radiatumipsiSurad2
Subiculum layer 5ipsiSuL51
Subiculum ventral partipsiSv2
Subiculum ventral part molecular layeripsiSvML-1
Indusium griseumipsiIG0
PresubiculumipsiPrS0
ParasubiculumipsiPaS1
Lateral parasubiculum deep part of layer 1ipsiPaSLdL1-0.5
Lateral parasubiculum layer 2ipsiPaSLL2-0.5
PostsubiculumipsiPost0
Entorhinal cortexipsiEnt-0.5
Lateral entorhinal cortexipsiLEnt3
Lateral entorhinal cortex medial part deep layer 3ipsiLEntMdL31
Lateral entorhinal cortex medial part layer 4ipsiLEntML41
Lateral entorhinal cortex medial part layer 5ipsiLEntML51
Lateral entorhinal cortex medial part layer 6ipsiLEntML60.5
Lateral entorhinal cortex ventral partipsiVLEA2
Lateral entorhinal cortex ventromedial partipsiVMEAL1
Lateral entorhinal cortex caudoventral part deep layer 1ipsiLEntcvL1b2.5
Lateral entorhinal cortex caudoventral part superficial layer 2ipsiLEntcvL2s2.5
Medial entorhinal cortex dorsal partipsiMEntD1.5
Medial entorhinal cortex ventral part layer 1ipsiMEntVL12.5
Medial entorhinal cortex caudoventral part deep layer 1ipsiMEntcvL1b2.5
Medial entorhinal cortex caudoventral part superficial layer 2ipsiMEntcvL2a2.5
Piriform cortexipsiPir1
Anterior piriform cortexipsiAPIRC1
Ventrorostral anterior piriform cortexipsiAPCvr1
Posterior piriform cortexipsiPPIRC-0.5
Postpiriform transition areaipsiTR2.5
Postpiriform transition area caudal levels layer 1ipsiTRCL12
Postpiriform transition area caudal levels layer 2ipsiTRCL20.5
Postpiriform transition area caudal levels layer 3ipsiTRCL30.5
Postpiriform transition area caudal levels layer 6ipsiTRCL62
Retrosplenial dorsalipsiRSd0
Retrosplenial agranular cortexipsiRSA0
Cingulate cortex area 1 caudal partipsiCg1c0
Cingulate cortex area 2 caudal partipsiCg2c0
Dorsal anterior cingulate cortexipsiDACC0
Prelimbic cortexipsiPrL1
Infralimbic cortexipsiIL2
Infralimbic cortex rostral partipsiILR1.5
Parietal cortex posterior areaipsiParP0
Temporal cortexipsiTE0
Primary auditory cortexipsiAu10
Ventral auditory areasipsiAUDv0
Agranular insular cortex dorsal partipsiAID3
Agranular insular cortex posterior partipsiAIP2.5
Agranular insular cortex ventral partipsiAIV2.5
Perirhinal cortexipsiA352
Perirhinal cortex superficial layer 1ipsiPRhsL10.5
Perirhinal cortex deep layer 1ipsiPRhdeL12
Perirhinal cortex layer 2ipsiA35L22
Perirhinal cortex layer 3ipsiA35L32
Perirhinal cortex layer 5ipsiA35L52
Perirhinal cortex layer 6ipsiA35L61
Ectorhinal cortexipsiA363
Ectorhinal cortex layer 5ipsiA36L51
Ectorhinal cortex layer 6ipsiA36L61
Motoric regionsipsiM0
Lateral prefrontal cortexipsilPFC-0.5
Lateral agranular prefrontal cortexipsiAGl0.5
Medial prefrontal cortexipsimPFC-0.5
Medial agranular prefrontal cortexipsiAGm1
Primary visual cortexipsiV10
Primary visual cortex binocular areaipsiV1B0
Laterolateral cortical visual areaipsiVISll0
Mediolateral cortical visual areaipsiVISlm0
Anteromedial cortical visual areaipsiVISam0
Lateral orbital cortexipsiLO0
Ventral orbital cortexipsiVO0
Ventrolateral orbital areaipsiVLO0
Accessory olfactory bulbipsiAOB0
Anterior olfactory nucleusipsiAON-1
Anterior olfactory nucleus posteroventral partipsiAONpv-0.5
Olfactory tubercle caudomedial partipsiTuOcm-1
Olfactory tubercle medial partipsiTuOMP-0.5
Lateral septal nucleus dorsal partipsiLSD-1
Nuclei of the lateral lemniscuscontraNLL1
Central tegmental field dorsal partcontraTGACd1
Laterodorsal tegmental nucleuscontraLDTg0
Dorsal tegmental nucleuscontraDTg0
Pedunculopontine tegmental nucleuscontraPPTg0
Bed nucleus of the stria terminaliscontraBST0.5
Anterior piriform cortexcontraAPIRC1
Ventrorostral anterior piriform cortexcontraAPCvr1
Posterior piriform cortexcontraPPIRC1
Prelimbic cortexcontraPrL1
Infralimbic cortexcontraIL2
Medial agranular prefrontal cortexcontraAGm1
Stellate ganglionipsiAutoSteG0.5
Pterygopalatine ganglionipsiAutoPpG-0.5

Input from

NameSideAbbr.WeightDetails
Ventrolateral periaqueductal gray rostral partipsiPAGvlr2
Substantia nigra A9ipsiSN-0.5
Ventral tegmental area A10ipsiVTA2
Peripeduncular nucleusipsiPP1
Locus coeruleusipsiLC4
Intermediate part of the anterior pole of the locus coeruleusipsiLCimap1
Dorsal part of the anterior pole of the locus coeruleusipsiLCda1
Ventral part of the posterior pole of the locus coeruleusipsiLCvp0
Intermediate part of the posterior pole of the locus coeruleusipsiLCip1
Dorsal part of the posterior pole of the locus coeruleusipsiLCdp1
Lateral parabrachial nucleus external partipsiLPBE2
Subcoeruleus nucleus dorsal partipsiSubCD-0.5
Nucleus of the solitary tractipsiSol1
Dorsal raphe nucleusipsiDR3
Median raphe nucleusipsiMnR1
Superior central raphe nucleusipsiCS1
Dorsal endopiriform nucleusipsiDEn3
Ventral endopiriform nucleusipsiVEn2
Diagonal band of BrocaipsiDBB2
Medial septal nucleusipsiMS1
Lateral preoptic areaipsiLPO-0.5
Medial preoptic areaipsiMPA-0.5
Magnocellular preoptic nucleusipsiMCPO1
Tenia tectaipsiTT1
Ventral tenia tectaipsiVTT0
Tuberomammillary nucleusipsiTuM2
Lateral hypothalamic area motor related juxtaventromedial region dorsal zoneipsiLHAjvd0
Lateral hypothalamic area motor related juxtaventromedial region ventral zoneipsiLHAjvv1
Tuberal division of the lateral hypothalamic areaipsiLHTC-0.5
Anterior hypothalamic areaipsiAHA-0.5
Posterior hypothalamic areaipsiPHA1
Ventromedial hypothalamic nucleusipsiVMH2
Ventromedial hypothalamic nucleus anterior partipsiVMHA3
Ventromedial hypothalamic nucleus central partipsiVMHC3
Ventromedial hypothalamic nucleus dorsomedial partipsiVMHDM3
Arcuate nucleusipsiArc-0.5
Nucleus paraventricularis [Periventricular zone anterior region]ipsiPaPAR-0.5
Premammillary nucleus ventral partipsiPMV1
Supramammillar nucleusipsiSuM1
A8 dopamine cells retrorubral groupipsiRRF-0.5
Central medial thalamic nucleusipsiCM1
Posterior thalamic nuclear groupipsiPo1
Intermediodorsal thalamic nucleusipsiIMD1
Mediodorsal thalamic nucleus medial partipsiMDM1
Paratenial thalamic nucleusipsiPT2
Paraventricular thalamic nucleusipsiPV-0.5
Paraventricular thalamic nucleus anterior partipsiPVA2
Paraventricular thalamic nucleus posterior partipsiPVP1
Reuniens thalamic nucleusipsiRe3
Subparafascicular thalamic nucleusipsiSPF1
Subparafascicular thalamic nucleus rostral partipsiSPFr0
Dorsal bank of rhinal fissureipsiDBrf-1
Ventral bank of the rhinal fissureipsiVBrf-1
Ventral bank of the rhinal fissure intermediate partipsiVBrfI2
Ventral bank of the rhinal fissure rostral partipsiVBrfR2.5
Anterior basolateral nucleusipsiBLA1
Posterior basolateral nucleusipsiBLP3
Ventral basolateral nucleusipsiBLV-0.5
Anterior basomedial nucleusipsiBMA3
Posterior basomedial nucleusipsiBMP2
Lateral amygdaloid nucleusipsiLA1.5
Bed nucleus of the stria terminalis anterior division anterolateral nucleusipsiBSTal0
Bed nucleus of the stria terminalis anterior division dorsomedial nucleusipsiBSTdm0
Bed nucleus of the stria terminalis anterior division subcommissural partipsiBSTAsc0
Bed nucleus of the stria terminalis anterior medial partipsiBSTAM0
Bed nucleus of the stria terminalis fusiform partipsiFu0
Bed nucleus of the stria terminalis magnocellular nucleusipsiBSTmc0
Bed nucleus of the stria terminalis oval nucleusipsiBSTo0
Bed nucleus of the stria terminalis rhomboid nucleusipsiBSTrh0
Bed nucleus of the stria terminalis juxtacapsular partipsiBSTj0
Bed nucleus of the stria terminalis lateral divisionipsiBSTL1
Bed nucleus of the stria terminalis lateral division ventral partipsiBSTLV1
Bed nucleus of the stria terminalis medial divisionipsiBSTM1
Bed nucleus of the stria terminalis dorsal nucleusipsiBSTd0
Bed nucleus of the stria terminalis interfascicular nucleusipsiBSTif-2
Bed nucleus of the stria terminalis posterior division ventral nucleusipsiBSTV0
Bed nucleus of the stria terminalis principal nucleusipsiBSTpr0
Bed nucleus of the stria terminalis transverse nucleusipsiBSTt0
Central amygdaloid nucleusipsiCe1
Central amygdaloid nucleus lateral divisionipsiCeL1
Central amygdaloid nucleus medial divisionipsiCeM1
Interstitial nucleus of the posterior limb of the anterior commissure medial partipsiIPACM1
Sublenticular extended amygdalaipsiSLEA2
Central division of sublenticular extended amygdalaipsiSLEAc3
Medial division of the sublenticular extended amygdalaipsiSLEAm-0.5
Amygdalopiriform transition areaipsiAPir-3
Anterior amygdaloid areaipsiAA3
Anterior cortical amygdaloid nucleusipsiACo3
Posterior amygdaloid nucleusipsiCOAp1
Posterior amygdaloid nucleus medial partipsiCOApm3
Posterolateral cortical nucleusipsiPLCo1
Nucleus of the lateral olfactory tractipsiLOT1
Medial extended amygdalaipsiMEXA-0.5
Medial amygdaloid nucleus anterodorsal partipsiMeAD1
Medial amygdaloid nucleus anteroventral partipsiMeAV1
Medial amygdaloid nucleus posterodorsal partipsiMePD1
Medial amygdaloid nucleus posteroventral partipsiMePV1
Amygdalohippocampal areaipsiAHi1
Bed nucleus of the accessory olfactory tractipsiBAOT1
Posteromedial cortical nucleusipsiPMCo2.5
ClaustrumipsiCl1
Ventral pallidumipsiVP1
Ventral pallidum ventromedial partipsiVPvm-0.5
Parasubthalamic nucleusipsiPSTh2
Field CA1 of hippocampusipsiCA11
Field CA1 of hippocampus dorsalipsiCA1d1
Field CA1 of hippocampus layer stratum pyramidaleipsiCA1pyr-0.5
Field CA1 of hippocampus ventral partipsiCA1v1.5
Field CA1 of hippocampus ventral layer stratum pyramidal cellsipsiCA1vL3spc-0.5
Field CA3 of hippocampusipsiCA30
SubiculumipsiS2
Intermediate subiculumipsiInSu2.5
Subiculum dorsal partipsiSd1
Subiculum ventral partipsiSv2
Indusium griseumipsiIG0
ParasubiculumipsiPaS1
Lateral entorhinal cortexipsiLEnt3
Medial entorhinal cortexipsiMEnt1
Medial entorhinal cortex layer 2bipsiMEntLyL2b-0.5
Piriform cortexipsiPir3
Anterior piriform cortexipsiAPIRC3
Posterior piriform cortexipsiPPIRC3
Postpiriform transition areaipsiTR1.5
Anterior prepiriform cortexipsiAPPC3
Retrosplenial ventral partipsiRSPv0
Retrosplenial agranular cortexipsiRSA0
Dorsal anterior cingulate cortexipsiDACC0
Ventral anterior cingulate cortexipsiVACC0
Prelimbic cortexipsiPrL1
Infralimbic cortexipsiIL3
Temporal cortexipsiTE0
Auditory regionsipsiAU0
Primary auditory cortexipsiAu10
Ventral auditory areasipsiAUDv0
Agranular insular cortex dorsal partipsiAID0
Agranular insular cortex posterior partipsiAIP3
Agranular insular cortex ventral partipsiAIV1
Gustatory dysgranular insular cortexipsiDIg1
Granular insular cortexipsiGI0.5
Perirhinal cortexipsiA35-0.5
Perirhinal cortex dorsal portionipsiPRhd1
Perirhinal cortex ventral portionipsiPRhv3
Ectorhinal cortexipsiA360
Dorsal peduncular cortexipsiDP1
Motoric regionsipsiM0
Lateral agranular prefrontal cortexipsiAGl0
Medial agranular prefrontal cortexipsiAGm0
Primary somatosensory cortexipsiS10
Secondary somatosensory cortexipsiS20
Primary visual cortexipsiV10
Secondary visual cortex lateral areaipsiV2L0
Primary visual cortex binocular areaipsiV1B0
Laterolateral cortical visual areaipsiVISll0
Anteromedial cortical visual areaipsiVISam0
Medial orbital cortexipsiMO2
Ventral orbital cortexipsiVO0
Interpeduncular nucleusipsiIP1
Olfactory bulb A16ipsiMOB2
Anterior olfactory nucleusipsiAON1
Ventromedial hypothalamic nucleus anterior partcontraVMHA1.5
Ventromedial hypothalamic nucleus central partcontraVMHC1.5
Ventromedial hypothalamic nucleus dorsomedial partcontraVMHDM1.5
Parasubthalamic nucleuscontraPSTh0
Trachea sideipsiOrgsTras2

Key for weights

ValueWeight
-3 unknown
-2 fibers of passage
-1 not clear
-0.5 exists
0 not present
0.5 very light
1 light / sparse
1.5 light / moderate
2 moderate / dense
2.5 moderate / strong
3 strong
4 very strong





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