University of Rostock

Department of Anatomy

Neuroscience Group

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Rat connectome



Brain stem left


Abbreviation
BS
Color       
Superior regionsPars cranialis

SynonymsAbbr.Language
Truncus encephalicus Lat
Bulbar  
Hirnstamm Deu
Bulbar region Eng
Brain stemBSEng

SubregionsSide
Mesencephalonleft
Rhombencephalonleft

Output to

NameSideAbbr.WeightDetails
Anteroventral cochlear nucleusipsiAVCON3
Medial part of the central region of the anteroventral cochlear nucleusipsiCeAVCONme2
Anterior division of the anteroventral cochlear nucleusipsiAAVCON2
Anteroventral cochlear nucleus lateral partipsiAVCONLa2
Dorsal cochlear nucleusipsiDC1
Dorsal cochlear nucleus deep layer most medial areaipsiDCdLmm2
Dorsal cochlear nucleus deep layer lateral partipsiDCdLL1
Posteroventral cochlear nucleusipsiPVCON3
Posteroventral cochlear nucleus posterior partipsiPVCONP2
Ventral cochlear nucleusipsiVC2
Ventral cochlear nucleus central partipsiVCCe2
Supraoptic nucleus [Supraoptic region]ipsiSO-0.5
Basolateral amygdaloid nucleusipsiBL-1
Caudate putamenipsiCPu3
Anterodorsal one third hippocampusipsiHIPPADot2
Dorsal geniculate nucleusipsiDLG-3
Cervical segmentsipsiCSeg3

Input from

NameSideAbbr.WeightDetails
Bed nucleus of the stria terminalis fusiform partipsiFu4
Primary somatosensory cortex barrel fieldipsiS1BF2

Key for weights

ValueWeight
-3 unknown
-2 fibers of passage
-1 not clear
-0.5 exists
0 not present
0.5 very light
1 light / sparse
1.5 light / moderate
2 moderate / dense
2.5 moderate / strong
3 strong
4 very strong





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