University of Rostock

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Rat connectome



Cervical segments left


Abbreviation
CSeg
Color       
Superior regionsSpinal segments

SynonymsAbbr.Language
Cervical segmentsCSegEng
Cervical spinal cord Eng

SubregionsSide
Prebrachial segmentsleft
Brachial segmentsleft
Cervical dorsal hornleft
Cervical enlargementleft
Cervical spinal cord layersleft
Cervical ventral hornleft
Cervical segments rostral partleft
Manus forearm motor nucleileft
Cervical segments intermediomedial cell columnleft
Cervical segments intermediolateral segmentsleft
Cervical sympathetic trunkleft
Cervical segments dorsal root ganglionsleft
Ventrolateral aspects of the cervical segmentsleft
Ventromedial aspects of the cervical segmentsleft
Lateral portion of the white matter of the cervical segmentsleft

Output to

NameSideAbbr.WeightDetails
Gigantocellular reticular nucleusipsiGi-0.5
Parvicellular reticular nucleusipsiPCRt1
Nucleus of the solitary tractipsiSol-0.5
Inferior oliveipsiIO0.5
Rostral part of the ventromedial medulla oblongataipsiRMeObvm2
Rostral part of the midline ventromedial medulla oblongataipsiRMeObvmi1
Lateral zoneipsiLHA-0.5
Dorsomedial hypothalamic nucleus [Medial zone]ipsiDM1
Centrolateral thalamic nucleus posterolateral partipsiCLPL-0.5
Zona incerta central partipsiZIce2
Zona incerta lateral partipsiZIL2
Lumbar segment 2ipsiL2-0.5
Lumbar segment 3ipsiL3-0.5
Lumbar segment 4ipsiL4-0.5
Spinal nucleus of the bulbocavernosus lumbal segment 5ipsiBCL5-0.5
Spinal nucleus of the bulbocavernosus lumbal segment 6ipsiBCL6-0.5
Lateral periaqueductal graycontraLPAG0.5
Gigantocellular reticular nucleuscontraGi-0.5
Parvicellular reticular nucleuscontraPCRt1
Spinal trigeminal nucleuscontraSp5nc-0.5
Inferior olivecontraIO3
Rostral part of the ventromedial medulla oblongatacontraRMeObvm3
Rostral part of the midline ventromedial medulla oblongatacontraRMeObvmi1
Lateral zonecontraLHA-0.5
Ventrobasal complexcontraVB0.5
Zona incerta lateral partcontraZIL3
Zona incerta central partcontraZIce3
Cervical segmentscontraCSeg3
Anterior cruciate ligamentipsiLigAntCru1
DiaphragmaipsiMuscDia-0.5
Femoral bone marrowipsiOrgSkFemM1
Femoral bone marrowcontraOrgSkFemM1

Input from

NameSideAbbr.WeightDetails
Brain stemipsiBS3
Central grey periaqueductalipsiCGPAG-0.5
Paralemniscal nucleusipsiPL0.5
Periaqueductal grayipsiPAG0.5
Lateral edge of the periaqueductal grayipsiLePAG2
Ventral periaqueductal grayipsiVPAG-0.5
Ventrolateral periaqueductal grayipsiVLPAG0.5
Red nucleusipsiR3
Red nucleus caudal partipsiRnCa-0.5
Red nucleus dorsomedial partipsiRdm-0.5
Superior colliculusipsiSC2
Superior colliculus intermediate and deep layersipsiSCidLa-0.5
Superior colliculus intermediate layersipsiSCi-0.5
Tectal grayipsiTG0.5
Tegmental areaipsiTGA1
Mesopontine tegmental area caudal partipsiTGAmc3
Mesopontine tegmental area rostral partipsiTGAmr2
Peduncularpontine nucleusipsiPPN1
Laterodorsal tegmental nucleusipsiLDTg1
Medullary tegmentumipsiTGM-0.5
Ventral tegmental nucleusipsiVTg-0.5
Pedunculopontine tegmental nucleusipsiPPTg-0.5
Ventromedial pedunculopontine tegmental nucleusipsiPPTgVM3
Rostral to the nucleus of DarkschewitschipsiRVMMM1
Edinger Westphal nucleus rostral partipsiEWR-0.5
Interstitial nucleus of CajalipsiInC1
Deep cerebellar nucleiipsiDNC-0.5
PonsipsiP-0.5
Reticular systemipsiRF3
Paramedian reticular nucleusipsiPMn-0.5
Pontine reticular nucleusipsiPRN-0.5
Pontine reticular nucleus laterocaudal partipsiPRNLC-0.5
Pontine reticular nucleus oral partipsiPnO-0.5
Pontine reticular nucleus ventral partipsiPnV-0.5
Pontine reticular nucleus caudal partipsiPNC-0.5
Gigantocellular reticular nucleusipsiGi3
Gigantocellular reticular nucleus alpha partipsiGiA-0.5
Gigantocellular reticular nucleus dorsorostral partipsiGiDR-0.5
Medullary reticular nucleusipsiMdD1
Medial subnucleus reticularis ventralisipsiMSRV1
Subcoeruleus nucleusipsiSubC-0.5
Subcoeruleus nucleus alpha partipsiSubCA-0.5
Medulla oblongataipsiMeOb3
Facial nucleusipsi7-0.5
Caudal part of the spinal trigeminal nucleus caudal partipsiSp5CC-0.5
Spinal trigeminal nucleus oral partipsiSp5O-0.5
Vestibular nucleiipsiVnc3
Lateral vestibular nucleusipsiLVe3
Nucleus of the solitary tractipsiSol3
11 beta hydroxysteroiddehydrogenase type-2 cellsipsiSolHSD20
Nucleus of the solitary tract ventrolateral partipsiSolVL3
Raphe nucleiipsiRAN3
Midline raphe nucleiipsiMRAN3
Raphe magnus nucleusipsiRMg3
Raphe obscurus nucleusipsiROb3
Raphe pallidus nucleusipsiRPa3
Caudal ventrolateral medullaipsiCVLM-0.5
Caudal medulla oblongataipsiCMeOb3
Inferior oliveipsiIO-0.5
Lateral preoptic areaipsiLPO0.5
Medial preoptic areaipsiMPA0.5
Lateral hypothalamic areaipsiLH4
Medial portion of the basal lateral hypothalamusipsiBLHme2
Anterior hypothalamic areaipsiAHA1
Dorsal hypothalamic areaipsiDA3
Dorsomedial hypothalamic nucleus [Medial zone]ipsiDM2
Posterior hypothalamic areaipsiPHA3
Ventromedial hypothalamic nucleusipsiVMH0.5
Arcuate nucleusipsiArc0.5
Paraventricular hypothalamic nucleus magnocellular part [Periventricular zone anterior region]ipsiPaAM0
Paraventricular nucleus of the hypothalamus magnocellular division anterior magnocellular partipsiPaAMa0
Paraventricular hypothalamic nucleus parvicellular division lateral partipsiPaPcL0
Paraventricular hypothalamic nucleus parvicellular division periventricular partipsiPaPP0
Paraventricular hypothalamic nucleus anterior parvicellular part [Periventricular zone anterior region]ipsiPaAP0
Paraventricular hypothalamic nucleusipsiPa4
Paraventricular hypothalamic nucleus dorsal parvocellular divisionipsiPavPoD0
Medial parvocellular division of the paraventricular hypothalamic nucleus lateral componentipsiPaMepL0
Paraventricular hypothalamic nucleus rostral partipsiPaRo1
Paraventricular nucleus ventral partipsiPaVe-0.5
A8 dopamine cells retrorubral groupipsiRRF-0.5
Zona incertaipsiZI3
Bed nucleus of the stria terminalisipsiBST1
Central amygdaloid nucleusipsiCe0
Cerebral cortexipsiCEC-0.5
Somatomotoric regionsipsiSMR3
Medial part of lateral agranular prefrontal cortex layer 5ipsiAGlmL50.5
Lateral part of the lateral agranular prefrontal cortex layer 5ipsiAGlLatL50
Lateral agranular prefrontal cortex middle part layer 5ipsiAGlmiL51
Lateral agranular prefrontal cortex rostral part layer 5ipsiAGlRL51
Somatosensory regions rostral part layersipsiSRroL1
Middle part of the somatosensory cortex layer 5ipsiSRmiL51
Medial part of the somatosensory cortex layer 5ipsiSRmeL50.5
Lateral part of somatosensory cortex layer 5ipsiSRlaL50
Neocortex layer 5ipsiNEOCXL5-0.5
Precentral cortex 1ipsiPRECx10.5
Precentral cortex 2ipsiPRECx20.5
Spinal cordipsiMES3
Lumbosacral spinal cordipsiLSSC-2
Lumbar segmentsipsiLSeg0
Paralemniscal nucleuscontraPL3
Periaqueductal graycontraPAG0.5
Lateral edge of the periaqueductal graycontraLePAG2
Red nucleuscontraR-0.5
Red nucleus caudal partcontraRnCa-0.5
Red nucleus dorsomedial partcontraRdm-0.5
Superior colliculuscontraSC4
Superior colliculus intermediate layerscontraSCi-0.5
Superior colliculus deep layerscontraSCd-0.5
Tectal graycontraTG0.5
Mesopontine tegmental area caudal partcontraTGAmc3
Mesopontine tegmental area rostral partcontraTGAmr2
Laterodorsal tegmental nucleuscontraLDTg0
Pedunculopontine tegmental nucleuscontraPPTg0
Ventromedial pedunculopontine tegmental nucleuscontraPPTgVM2
Rostral to the nucleus of DarkschewitschcontraRVMMM-0.5
Paramedian reticular nucleuscontraPMn-0.5
Pontine reticular nucleuscontraPRN-0.5
Pontine reticular nucleus oral partcontraPnO-0.5
Pontine reticular nucleus caudal partcontraPNC-0.5
Gigantocellular reticular nucleus dorsorostral partcontraGiDR-0.5
Medullary reticular nucleuscontraMdD-0.5
Facial nucleuscontra7-0.5
Spinal trigeminal nucleus oral partcontraSp5O-0.5
Midline raphe nucleicontraMRAN0.5
Raphe magnus nucleuscontraRMg-0.5
Lateral preoptic areacontraLPO0
Medial preoptic areacontraMPA0.5
Lateral hypothalamic areacontraLH3
Medial portion of the basal lateral hypothalamuscontraBLHme1
Anterior hypothalamic areacontraAHA1
Dorsal hypothalamic areacontraDA1
Dorsomedial hypothalamic nucleus [Medial zone]contraDM1
Posterior hypothalamic areacontraPHA1
Ventromedial hypothalamic nucleuscontraVMH0.5
Arcuate nucleuscontraArc0.5
Paraventricular hypothalamic nucleuscontraPa1
Paraventricular hypothalamic nucleus rostral partcontraPaRo0.5
Zona incertacontraZI2
Bed nucleus of the stria terminaliscontraBST0.5
Central amygdaloid nucleuscontraCe0
Forelimb motor cortexcontraFMCx-0.5
Lateral agranular prefrontal cortex layer 5contraAGlL53
Lateral agranular prefrontal cortex layer 5bcontraAGlL5b-0.5
Medial part of lateral agranular prefrontal cortex layer 5contraAGlmL52.5
Lateral part of the lateral agranular prefrontal cortex layer 5contraAGlLatL51
Lateral agranular prefrontal cortex middle part layer 5contraAGlmiL53
Lateral agranular prefrontal cortex rostral part layer 5contraAGlRL53
Medial agranular prefrontal cortexcontraAGm-0.5
Primary somatosensory cortex layer 5contraS1L53
Secondary somatosensory cortex lateral areacontraS2LA3
Somatosensory regions rostral part layerscontraSRroL3
S1 S2 border zone layer 5contraS1S2bzL51
Middle part of the somatosensory cortex layer 5contraSRmiL53
Medial part of the somatosensory cortex layer 5contraSRmeL52.5
Lateral part of somatosensory cortex layer 5contraSRlaL51
Somatomotoric regions layer 5contraSMRL51
Posterior third of precentral cortex 1contraptPRECx10
Cervical segmentscontraCSeg3

Key for weights

ValueWeight
-3 unknown
-2 fibers of passage
-1 not clear
-0.5 exists
0 not present
0.5 very light
1 light / sparse
1.5 light / moderate
2 moderate / dense
2.5 moderate / strong
3 strong
4 very strong





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