University of Rostock

Department of Anatomy

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Rat connectome



Hindlimb motor cortex layer 5 left


Abbreviation
HMCxL5
Color       
Superior regionsHindlimb motor cortex deep gray matter layers

SynonymsAbbr.Language
Hindlimb motor cortex layer 5HMCxL5 

Output to

NameSideAbbr.WeightDetails
Tegmental areaipsiTGA1
Reticulotegmental nucleusipsiRETn1
Pontine nucleiipsiPn3
Middle part of cuneate nucleusipsiCuM1
Gracile nucleus median partipsiGrm1
Ventrolateral thalamic nucleusipsiVL-0.5
Ventrolateral aspect of the the rostralmost reticular thalamic nuclear complexipsiRtmrVL-0.5
External aspect of the ventrolateral aspect of the the rostralmost reticular thalamic nuclear complexipsiRtmrVLe1
Internal lamella of the ventrolateral aspect of the the rostralmost reticular thalamic nuclear complexipsiRtmrVLi0.5
Caudate putamenipsiCPu3
Parietal cortex posterior areaipsiParP3
Pyramidal tractipsipy1
Spinal cord layers C6ipsiSCLC63
Spinal cord layers C7ipsiSCLC73
Spinal cord layer 5 T8ipsiSCL5T8-0.5
Spinal cord layer 6 T8ipsiSCL6T8-0.5
Spinal cord layer 3 T8ipsiSCL3T8-0.5
Spinal cord layer 4 T8ipsiSCL4T8-0.5
Spinal cord layer 5 T9ipsiSCL5T9-0.5
Spinal cord layer 6 T9ipsiSCL6T9-0.5
Spinal cord layer 3 T9ipsiSCL3T9-0.5
Spinal cord layer 4 T9ipsiSCL4T9-0.5
Thoracal segment 10ipsiT10-0.5
Spinal cord layer 5 T10ipsiSCL5T10-0.5
Spinal cord layer 6 T10ipsiSCL6T10-0.5
Spinal cord layer 3 T10ipsiSCL3T10-0.5
Spinal cord layer 4 T10ipsiSCL4T10-0.5
Spinal cord layer 5 T11ipsiSCL5T11-0.5
Spinal cord layer 6 T11ipsiSCL6T11-0.5
Spinal cord layer 3 T11ipsiSCL3T11-0.5
Spinal cord layer 4 T11ipsiSCL4T11-0.5
Spinal cord layer 5 T12ipsiSCL5T12-0.5
Spinal cord layer 6 T12ipsiSCL6T12-0.5
Spinal cord layer 3 T12ipsiSCL3T12-0.5
Spinal cord layer 4 T12ipsiSCL4T12-0.5
Spinal cord layer 5 T13ipsiSCL5T13-0.5
Spinal cord layer 6 T13ipsiSCL6T13-0.5
Spinal cord layer 3 T13ipsiSCL3T13-0.5
Spinal cord layer 4 T13ipsiSCL4T13-0.5
Spinal cord layer 5 L1ipsiSCL5L1-0.5
Spinal cord layer 6 L1ipsiSCL6L1-0.5
Spinal cord layer 3 L1ipsiSCL3L1-0.5
Spinal cord layer 4 L1ipsiSCL4L1-0.5
Lumbar segment 2ipsiL2-0.5
Spinal cord layer 5 L2ipsiSCL5L2-0.5
Spinal cord layer 6 L2ipsiSCL6L2-0.5
Spinal cord layer 3 L2ipsiSCL3L2-0.5
Spinal cord layer 4 L2ipsiSCL4L2-0.5
Spinal cord layer 5 L3ipsiSCL5L3-0.5
Spinal cord layer 6 L3ipsiSCL6L3-0.5
Spinal cord layer 3 L3ipsiSCL3L3-0.5
Spinal cord layer 4 L3ipsiSCL4L3-0.5
Spinal cord layer 5 L4ipsiSCL5L4-0.5
Spinal cord layer 6 L4ipsiSCL6L4-0.5
Spinal cord layer 3 L4ipsiSCL3L4-0.5
Spinal cord layer 4 L4ipsiSCL4L4-0.5
Pontine nucleicontraPn2
Middle part of cuneate nucleuscontraCuM3
Gracile nucleus median partcontraGrm3
Caudate putamencontraCPu1
Spinal cord layers C6contraSCLC63
Spinal cord layers C7contraSCLC73

Input from

NameSideAbbr.WeightDetails
Frontal cortex area 2 rostral partipsiFr2R1
Secondary visual cortex lateral areaipsiV2L1

Key for weights

ValueWeight
-3 unknown
-2 fibers of passage
-1 not clear
-0.5 exists
0 not present
0.5 very light
1 light / sparse
1.5 light / moderate
2 moderate / dense
2.5 moderate / strong
3 strong
4 very strong





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