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Rat connectome



Caudate putamen right


Abbreviation
CPu
Color       
Superior regionsStriatum

SynonymsAbbr.Language
 CP 
Striate nucleus  
Corpus striatum Lat
Neostriatum  
StriatumSTR 
Caudate-putamenCPEng
Caudoputaminal complex Eng
Caudate putamenCPuEng
CaudatoputamenCPU 
Caudoputamen area Eng
Caudate putamen complexC-PEng
Caudate putamen nucleus Eng

SubregionsSide
Anterior striatumright
Associative striatumright
Caudal striatumright
Caudate putamen basal partright
Caudate putamen basolateral partright
Caudate putamen bordering globus pallidusright
Cell bridges of the ventral striatumright
Central striatumright
Dorsal striatumright
Medial edge of the caudatoputamenright
Medial margin of the caudatoputamenright
Mediodorsal striatumright
Mediolateral striatumright
Midventral striatumright
Orofacial sensorimotor district of the striatumright
Posterior caudate putamenright
Rostral striatumright
Striatal matrix compartmentright
Striatal patch compartmentright
Subcallosal streakright
Ventral striatumright
Medial part of the caudate putamenright
Jaw region of the striatumright
Marginal zone of the striatumright
Cell populations of the caudate putamenright
Ventricular surface of the striatumright
Caudate putamen dorsal circumferenceright
Caudate putamen lateral circumferenceright
Caudate putamen ventral circumferenceright
Striatum surrounding the anterior commissureright
Precommisural caudate putamenright
Striatopallidal fibersright
Caudate putamen tailright
Mid caudate putamenright
Striatal zone adjoining the lateral ventricleright
Anteroventromedial caudate putamenright
Intermediate caudate putamenright
Lateral striatumright
Tail of the striatumright

Output to

NameSideAbbr.WeightDetails
Red nucleuscontraR-0.5
Midbrain extrapyramidal areacontraMEA0
Substantia nigra A9contraSN-0.5
Substantia nigra compact partcontraSNC-0.5
Substantia nigra lateral partcontraSNL-0.5
Substantia nigra reticular partcontraSNR-0.5
Ventral tegmental area A10contraVTA-0.5
Deep mesencephalic nucleuscontraDpMe0
Parabrachial nucleuscontraPB0
Dorsal raphe nucleuscontraDR0
Inferior olivecontraIO0
Inferior olive dorsal nucleuscontraIOD0
Inferior olive principal nucleuscontraIOPr0
Retrotrapezoid nucleuscontraRTN0
A8 dopamine cells retrorubral groupcontraRRF0
Central medial thalamic nucleuscontraCM1
Paracentral thalamic nucleuscontraPC1
Parafascicular thalamic nucleuscontraPF0
Mediodorsal thalamic nucleus central partcontraMDC1
Mediodorsal thalamic nucleus medial partcontraMDM1
Submedius thalamic nucleuscontraSub0
Ventrolateral thalamic nucleuscontraVL0
Ventromedial thalamic nucleuscontraVM0
Globus palliduscontraGP2
Lateral globus palliduscontraLGP-0.5
Medial globus palliduscontraMGP-0.5
Subthalamic nucleuscontraSTh0
Cingulate cortexcontraCg2
Auditory regionscontraAU-0.5
Perirhinal cortexcontraA352
Caudal forelimb motor areacontraCFMA2
Primary somatosensory cortex barrel fieldcontraS1BF2
Primary somatosensory cortex forelimb regioncontraS1FL3
Neocortex layers 5-6contraNEOCXL56-0.5
Cervical segment 1contraCS10
Spinal cord layers C1contraSCLC10
Cervical segment 2contraCS20
Spinal cord layers C2contraSCLC20
Cervical segment 3contraCS30
Spinal cord layers C3contraSCLC30
Cervical segment 4contraCS40
Spinal cord layers C4contraSCLC40
Cervical segment 5contraCS50
Spinal cord layers C5contraSCLC50
MesencephalonipsiMEC2
Periaqueductal grayipsiPAG0
Ventrolateral periaqueductal grayipsiVLPAG2
Red nucleusipsiR2
Border of the red nucleusipsiBoR2
Mesopontine tegmental area caudal partipsiTGAmc0
Mesopontine tegmental area mid-levelipsiTGAmm0
Mesopontine tegmental area rostral partipsiTGAmr0
Midbrain extrapyramidal areaipsiMEA0.5
Peduncularpontine nucleusipsiPPN-0.5
Substantia nigra A9ipsiSN4
Substantia nigra caudal partipsiSNcp-0.5
Lateral part of the caudal extent of the substantia nigraipsiSNLcp-0.5
Intermediate part of the caudal substantia nigraipsiSNimcp-0.5
Substantia nigra compact partipsiSNC4
Substantia nigra compact part caudal tieripsiSNCC4
Substantia nigra lateral partipsiSNL3
Substantia nigra medial partipsiSNM3
Substantia nigra reticular partipsiSNR4
Substantia nigra reticular part caudal tieripsiSNRca4
Substantia nigra reticular part caudolateral tier ventral halfipsiSNRcaLv2
Substantia nigra reticular part lateral tieripsiSNRL-0.5
Substantia nigra reticular part medial tieripsiSNRm3
Substantia nigra reticular part medial two-thirdsipsiSNRmtt-0.5
Substantia nigra reticular part rostral tieripsiSNRro-0.5
Substantia nigra reticular part rostrocaudal partipsiSNRrc3
Substantia nigra reticular part ventrolateral tieripsiSNRVL3
Substantia nigra rostral partipsiSNrp-0.5
Rostral substantia nigra dorsal partipsiSNrd1
Ventral tegmental area A10ipsiVTA3
Middle part of the retrorubral fieldipsiRRmi0
Midbrain tegmentumipsiTGmi1
Pedunculopontine tegmental nucleus caudal partipsiPPTgC0
Pedunculopontine tegmental nucleus mid levelipsiPPTgmL0
Pedunculopontine tegmental nucleus rostral partipsiPPTgR0
Locus coeruleusipsiLC-0.5
Pontine nucleiipsiPn-0.5
Reticular systemipsiRF2
Mesencephalic reticular formationipsiMRF-0.5
Deep mesencephalic nucleusipsiDpMe2.5
Parabrachial nucleusipsiPB1.5
Lateral parabrachial nucleusipsiLPB0
Lateral parabrachial nucleus central partipsiLPBC2
Lateral parabrachial nucleus dorsal partipsiLPBD1
Lateral parabrachial nucleus external partipsiLPBE2
Lateral parabrachial nucleus superior partipsiLPBS1
Lateral parabrachial nucleus ventral partipsiLPBV2
Parabrachial nucleus lateral crescentipsiPBlc2
Parabrachial nucleus dorsal partipsiPBD-0.5
Area postremaipsiAP0
Nucleus of the solitary tractipsiSol0
Dorsal motor nucleus of vagusipsi10-0.5
Dorsal raphe nucleusipsiDR2
Median raphe nucleusipsiMnR0
Raphe magnus nucleusipsiRMg0.5
Raphe obscurus nucleusipsiROb0.5
Inferior oliveipsiIO0
Inferior olive dorsal nucleusipsiIOD0
Inferior olive principal nucleusipsiIOPr0
Retrotrapezoid nucleusipsiRTN0
Basal forebrainipsiBAF-0.5
Endopiriform systemipsiEnN-0.5
Nucleus of the horizontal limb of the diagonal bandipsiHDB0
Nucleus of the vertical limb of the diagonal bandipsiVDB0
Basal nucleus MeynertipsiB3
Substantia innominataipsiSI3
Substantia innominata sublenticular partipsiSIS0.5
Nucleus of the ansa lenticularisipsiAL-0.5
Lateral preoptic areaipsiLPO2
Medial preoptic areaipsiMPA-0.5
Medial preoptic nucleusipsiMPO0
Ventrolateral preoptic nucleusipsiVLPO-0.5
Ventromedial preoptic nucleusipsiVMPO-0.5
Dorsomedial hypothalamic nucleusipsiDMHy0
Lateral hypothalamic area posterior part [Preoptic anterior region]ipsiLHApPAR0
Lateral hypothalamic areaipsiLH1
Lateral hypothalamic area anterior partipsiLHAa2
Lateral hypothalamic area posterior partipsiLHAp0
Tuberal region of lateral hypothalamusipsiTuLH2
Rostro-dorso kateral hypothalamic areaipsiRDLH0
Lateral hypothalamic area [Lateral zone mammillary level]ipsiLHLZM0
Posterolateral hypothalamusipsiPLHY-0.5
Medial division of the hypothalamusipsiMdH0
Medial division of the hypothalamus dorsomedial lateral partipsiMdHdmL0
Medial division of the hypothalamus ventromedial lateral partipsiMdHvmL0
Medial division of the hypothalamus posterior lateral partipsiMdHpL0
Medial zoneipsiMHA0
Anterior hypothalamic areaipsiAHA0
Area periventricularis hypothalamica communis [Regio hypothalamus caudalis]ipsiPeRHC0
Dorsal hypothalamic areaipsiDA0.5
Ventromedial hypothalamic nucleusipsiVMH0
Arcuate nucleusipsiArc-0.5
Posterior magnocellular subdivision of the paraventricular hypothalamic nucleusipsiPaPoM0
Paraventricular hypothalamic nucleus parvicellular division dorsal partipsiPaPcD0
Paraventricular hypothalamic nucleus lateral parvocellular partipsiLPPa0
Paraventricular hypothalamic nucleus anterior parvicellular part [Periventricular zone anterior region]ipsiPaAP0
Paraventricular nucleus of the hypothalamus magnocellular division anterior magnocellular partipsiPaAMa0
Paraventricular hypothalamic nucleusipsiPa0
Paraventricular nucleus medial parvocellular partipsiPaMep0
Suprachiasmatic nucleusipsiSCh0
Supraoptic nucleus [Supraoptic region]ipsiSO0
Mammillary bodyipsiCMAM-0.5
A8 dopamine cells retrorubral groupipsiRRF1
A8 dopamine cells retrorubral group lateral partipsiRRFL3
A8 dopamine cells retrorubral group medial partipsiRRFm0
Perifornical nucleusipsiPeF0.5
Retrochiasmatic areaipsiRCh0
ThalamusipsiT1
Central medial thalamic nucleusipsiCM2
Centre median nucleusipsiCeMe-0.5
Paracentral thalamic nucleusipsiPC2
Parafascicular thalamic nucleusipsiPF2
Mediodorsal thalamic nucleus central partipsiMDC2
Mediodorsal thalamic nucleus lateral partipsiMDL-10
Mediodorsal thalamic nucleus medial partipsiMDM2
Ventrolateral thalamic nucleusipsiVL3
Ventrobasal complexipsiVB-0.5
Ventromedial thalamic nucleusipsiVM3
Parafascicular nucleusipsiPFa-0.5
Lateral posterior thalamic nucleusipsiLP2
Reticular thalamic nucleus caudal partipsiRtc-10
Reticular thalamic nucleus rostral partipsiRtr-10
Dorsal part of reticular thalamic nucleus rostral partipsiRtrD-10
Ventral part of reticular thalamic nucleus rostral partipsiRtrVe-10
Ventral medial nucleus of the thalamusipsiVMT3
Zona incertaipsiZI2
Nucleus of the fields of ForelipsiF0.5
Tuber cinereum areaipsiTC0.5
Optic tractipsiopt0.5
HabenulaipsiHAB-0.5
Internal capsuleipsiic1.5
Cerebral peduncle basal partipsicp0.5
Corpus callosumipsicc-0.5
Medial forebrain bundleipsimfb-2
Medial forebrain bundle at the level of the anterior commissureipsimfbac0
Medial forebrain bundle at the level of the lateral preoptic areraipsimfbLpa0
Medial forebrain bundle at the level of the lateral hypothalamusipsimfbLH0
Medial forebrain bundle at the level of the posterior hypothalamic nucleusipsimfbPH0
Medial lemniscusipsiml0.5
Amygdaloid complexipsiAC4
Basolateral amygdaloid nucleusipsiBL1
Bed nucleus of the stria terminalis caudal part caudoventral regionipsiBSTCacv2
Bed nucleus of the stria terminalis caudal part perifornical regionipsiBSTCapf2
Bed nucleus of the stria terminalis lateral divisionipsiBSTL1
Bed nucleus of the stria terminalis medial divisionipsiBSTM1
Central amygdaloid nucleusipsiCe-0.5
PallidumipsiPAL2.5
Globus pallidusipsiGP3
Anteroventral globus pallidusipsiGPav1.5
Caudal globus pallidusipsiGPc1.5
Dorsal globus pallidusipsiDGP-0.5
Lateral globus pallidusipsiLGP3
Medial globus pallidusipsiMGP3
Medial globus pallidus caudal partipsiMGPc3
Medial globus pallidus rostral partipsiMGPr3
Peripallidal regionipsiPePa4
Rostral globus pallidusipsiGPr2
Subpallidal regionipsiSuPa0
Ventral pallidumipsiVP3
Globus pallidus outer neuronsipsiGPon-0.5
Globus pallidus inner neruonsipsiGPin-0.5
StriatumipsiSTR4
Accumbens nucleusipsiAc2
Caudate putamenipsiCPu3
Dorsal striatumipsiCPud-0.5
Subthalamic nucleusipsiSTh3
Cerebral cortexipsiCEC-0.5
Dentate gyrusipsiDG2
Field CA1 of hippocampusipsiCA12
Field CA3 of hippocampusipsiCA32
Lateral entorhinal cortexipsiLEnt2
Medial entorhinal cortexipsiMEnt1.5
Retrosplenial regionsipsiRS-1
Cingulate cortexipsiCg2
NeocortexipsiNEOCX3
Frontal association cortexipsiFrA-0.5
Parietal cortex posterior areaipsiParP2
Auditory regionsipsiAU-0.5
Auditory regions layer 5ipsiAUL5-0.5
Perirhinal cortexipsiA352
Ectorhinal cortexipsiA362.5
Postrhinal cortexipsiPOR2
Prefrontal cortexipsiPFC0
Somatomotoric regionsipsiSMR2
Lateral agranular prefrontal cortexipsiAGl4
Caudal forelimb motor areaipsiCFMA2
Rostral forelimb motor areaipsiRFMA2
Medial prefrontal cortexipsimPFC1
Medial agranular prefrontal cortexipsiAGm4
Primary somatosensory cortexipsiS1-0.5
Primary somatosensory cortex barrel fieldipsiS1BF3
Primary somatosensory cortex forelimb regionipsiS1FL3
Somatosensory cortex layer 5ipsiSRL52
Visual regionsipsiVR-1
Lateral orbital cortexipsiLO4
Ventral orbital cortexipsiVO4
Neocortex layer 4ipsiNEOCXL40.5
Neocortex layers 5-6ipsiNEOCXL560.5
Anterior commissureipsiac0
Medial geniculate nucleus medial partipsiMGM-0.5
Septal regionipsiSER0
Lateral septal nucleusipsiLS-0.5
Lateral ventricleipsiLV-0.5
Cervical segment 1ipsiCS10
Spinal cord layers C1ipsiSCLC10
Cervical segment 2ipsiCS20
Spinal cord layers C2ipsiSCLC20
Cervical segment 3ipsiCS30
Spinal cord layers C3ipsiSCLC30
Cervical segment 4ipsiCS40
Spinal cord layers C4ipsiSCLC40
Cervical segment 5ipsiCS50
Spinal cord layers C5ipsiSCLC50
Bulbospongiosus musclecontraMuscbsp1
Bulbospongiosus muscleipsiMuscbsp1

Input from

NameSideAbbr.WeightDetails
Central graycontraCG0.5
Central gray mesencephalic partcontraCGM-1
Tegmental areacontraTGA0
Ventral midbrain tegmentumcontraVeMT0
Substantia nigra A9contraSN3
Substantia nigra caudal partcontraSNcp0.5
Substantia nigra compact partcontraSNC3
Substantia nigra compact part caudal tier medial partcontraSNCCm1
Substantia nigra compact part rostrocaudal partcontraSNCrc1
Substantia nigra lateral partcontraSNL1
Substantia nigra reticular partcontraSNR2
Substantia nigra reticular part caudal tiercontraSNRca-0.5
Substantia nigra reticular part dorsal tiercontraSNRD0.5
Substantia nigra reticular part rostral tiercontraSNRro-0.5
Substantia nigra reticular part ventral subdivisioncontraSNRv1
Substantia nigra rostral partcontraSNrp0.5
Middle substantia nigracontraSNmid0.5
Ventral tegmental area A10contraVTA2
Ventral tegmental area A10 caudal partcontraVTAcp0.5
Ventral tegmental area A10 middle partcontraVTAmi0.5
Ventral tegmental area rostral partcontraVTAR0.5
Parabrachial pigmented nucleuscontraPBP1
Paranigral nucleuscontraPN1
Retrorubral nucleuscontraRR1
Middle part of the retrorubral fieldcontraRRmi0
Rostral retrorubral nucleuscontraRRR0
Caudal retrorubral nucleuscontraCRR0.5
Lateral tegmental areacontraLTGA1
Ventral tegmental nucleuscontraVTg-0.5
Pedunculopontine tegmental nucleuscontraPPTg1.5
Cerebellar hemispherecontraCEREBH1
Locus coeruleus dorsal partcontraLCD1
Peribrachial regioncontraPBR2
Parabrachial nucleuscontraPB-1
Nucleus of the solitary tractcontraSol-1
Raphe nucleicontraRAN1
Dorsal raphe nucleuscontraDR3
Dorsal raphe nucleus dorsal partcontraDRD-0.5
Dorsal raphe nucleus dorsomedian partcontraDRdmm1
Dorsal raphe nucleus rostral partcontraDRr2
Dorsal raphe nucleus rostrocaudal partcontraDRrc-0.5
Dorsal raphe nucleus ventral partcontraDRV-0.5
Dorsal raphe nucleus ventromedian partcontraDRvmm1
Median raphe nucleuscontraMnR0
Medial preoptic nucleuscontraMPO-0.5
Tuberomammillary nucleuscontraTuM2
Tuberomammillary nucleus diffuse partcontraTuMdif0.5
Tuberomammillary nucleus medial partcontraTuMM0.5
Ventral tuberomammillary nucleuscontraVTM2
Posteromammillary caudal magnocellular nuclei of the posterior basal hypothalamuscontraPMCMC1
Posterior magnocellular nucleicontraPHApm-0.5
Central medial thalamic nucleuscontraCM3
Paracentral thalamic nucleuscontraPC3
Parafascicular thalamic nucleuscontraPF3
Parafascicular thalamic nucleus dorsolateral partcontraPFdL0
Mediodorsal thalamic nucleuscontraMD0
Midline group of the dorsal thalamuscontraMTN1
Ventrolateral thalamic nucleuscontraVL1
Ventral posterior thalamic complexcontraVPT1
Ventromedial thalamic nucleuscontraVM1
Intralaminar nucleicontraILN0
Lateral posterior thalamic nucleus mediorostral partcontraLPMR0
Ventral thalamuscontraVNT0
Anterior pretectal nucleus dorsal partcontraAPTD0
Nucleus of the lateral olfactory tract layer 3contraLOTL3-3
Globus palliduscontraGP1
Cerebral cortexcontraCEC0.5
HippocampuscontraHIPP0
Hilus of the dentate gyruscontraHil-0.5
Subiculum ventral partcontraSv1
Fimbria lateral to the hippocampuscontrafimblH-2
Limbic regionscontraLR-0.5
Cingulate cortexcontraCg2
Anterior cingulate cortexcontraACC-0.5
Cingulate cortex area 3 layer 5contraCg3L53
Cingulate cortex layer 3contraCgL30.5
Cingulate cortex layer 4contraCgL40.5
Cingulate cortex layer 5contraCgL50.5
Cingulate cortex layer 5 acontraCgL5a1
Prelimbic cortexcontraPrL-0.5
Prelimbic cortex dorsal part layer 5contraPrLdL5-0.5
Infralimbic cortexcontraIL3
Frontal association cortexcontraFrA2
Frontal association cortex layer 3contraFrALL30.5
Frontal association cortex layer 4contraFrALL40.5
Frontal association cortex layer 5contraFrALL53
Frontal association cortex crossed corticostriatal cellcontraCCSFr-0.5
Frontal cortex area 2contraFr22
Frontal cortex area 2 layer 5contraFr2L53
Frontal cortex area 3 layer 5contraFr3L53
Parietal cortex posterior area dorsal part layer 5contraParPDL53
Parietal cortex posterior area rostral part layer 5contraParPRL53
Parietal cortex area 1 layer 5contraPar1L53
Temporal association area 3 rostral part layer 5contraTe3RL53
Temporal association area 3 ventral partcontraTe3V1
Agranular insular cortexcontraAI-0.5
Agranular insular cortex layer 5contraAIL51
Dorsal part of the granular insular cortex rostroventrally adjacent to the rostralmost part of S2contradGlrvs22
Perirhinal cortexcontraA351
Perirhinal cortex anterior portioncontraPRha1.5
Somatomotoric regionscontraSMR0.5
Motoric regionscontraM1
Lateral agranular prefrontal cortexcontraAGl3
Caudal part of lateral agranular prefrontal cortex layer 5contraAGlcL5-0.5
Caudal forelimb motor areacontraCFMA2
Forelimb motor cortex layer 5contraFMCxL51
Hindlimb motor cortex layer 5contraHMCxL51
Lateral agranular prefrontal cortex layer 3contraAGlL30.5
Lateral agranular prefrontal cortex layer 5contraAGlL53
Lateral agranular prefrontal cortex layer 5acontraAGlL5a1
Jaw movement motor cortexcontraJMCx3
Whisker motor cortex subfieldscontraWMCxS1
Medial prefrontal cortexcontramPFC2
Motoric regions layer 3contraMRL31
Motoric regions layer 5contraMRL51
Medial agranular prefrontal cortexcontraAGm1
Medial agranular prefrontal cortex layer 3contraAGmL30.5
Medial agranular prefrontal cortex layer 5 acontraAGmL5a1
Sensory regionscontraSR1
Primary somatosensory cortexcontraS12
Primary somatosensory cortex layerscontraS1L0.5
Primary somatosensory cortex layer 5contraS1L51
Primary somatosensory cortex layer 5 acontraS1L5a1
Primary somatosensory cortex layer 3contraS1L31
Secondary somatosensory cortex layerscontraS2L0.5
Secondary somatosensory cortex layer 5acontraS2L5a1
Primary visual cortexcontraV10
Secondary visual cortex lateral areacontraV2L-1
Primary visual cortex monocular areacontraV1M0
Lateral orbital cortexcontraLO-0.5
Ventrolateral orbital areacontraVLO-0.5
Intergeniculate leafcontraIGL0
Ventral lateral geniculate nucleus anterior partcontraVLGA0
Caudal portion of the lateral ventriclecontraCaLV0.5
Spinal cord layers C1contraSCLC12
Spinal cord layers C2contraSCLC22
Spinal cord layers C3contraSCLC31
Spinal cord layers C4contraSCLC41
Spinal cord layers C5contraSCLC51
Spinal cord layers C6contraSCLC61
Spinal cord layers C7contraSCLC71
Spinal cord layers C8contraSCLC81
Spinal cord layers T1contraSCLT11
Brain stemipsiBS3
MesencephalonipsiMEC3
Central grayipsiCG2
Central gray mesencephalic partipsiCGM-1
Medial longitudinal fasciculusipsimlf0.5
Oculomotor nucleus caudal partipsi3C0.5
Periaqueductal grayipsiPAG0.5
Ventral periaqueductal grayipsiVPAG-1
Ventrolateral periaqueductal grayipsiVLPAG-0.5
Red nucleusipsiR1
Red nucleus magnocellular part ventral partipsiRMCV-0.5
Ventrolateral part of the red nucleus magnocellular partipsiRMCVL-0.5
Tegmental areaipsiTGA2
Mesopontine tegmental area caudal partipsiTGAmc1
Mesopontine tegmental area dorsal partipsiTGAmd1.5
Mesopontine tegmental area mid-levelipsiTGAmm1.5
Mesopontine tegmental area rostral partipsiTGAmr1
Mesopontine tegmental area ventral partipsiTGAmv0
Midbrain extrapyramidal areaipsiMEA2
Midbrain extrapyramidal area caudal partipsiMEAc3
Peduncularpontine nucleus caudal levelsipsiPPNCa-0.5
Cholinergic neurons of the peduncularpontine nucleusipsiPPNch-0.5
Ventral midbrain tegmentumipsiVeMT3
Dopaminergic nuclear complexipsiDoNC-0.5
Substantia nigra A9ipsiSN4
Substantia nigra A9 dorsal partipsiSND-0.5
Substantia nigra A9 dorsolateral partipsiSNdL-0.5
Substantia nigra caudal partipsiSNcp3
Substantia nigra compact partipsiSNC4
Substantia nigra compact part anterioripsiSNCA3
Substantia nigra compact part caudal tieripsiSNCC2
Substantia nigra compact part dorsal tieripsiSNCD3
Extreme dorsal layers of the substantia nigra compact partipsiSNCeD2
Substantia nigra compact part lateral tieripsiSNCL3
Substantia nigra compact part medial tieripsiSNCM3
Medial third of the substantia nigra compact partipsiSNCMt-0.5
Substantia nigra compact part mediolateral tieripsiSNCML2
Substantia nigra compact part posterioripsiSNCP1
Substantia nigra compact part rostral tieripsiSNCr3
Substantia nigra compact part rostrocaudal partipsiSNCrc2
Substantia nigra compact part ventral tieripsiSNCV2
Substantia nigra compact part ventral tier dopaminergic neuron populationipsiSNCVdopa0.5
Substantia nigra compact part anteroposterior partipsiSNCap-0.5
Substantia nigra compact part middle two thirdsipsiSNCmitt3
Substantia nigra lateral partipsiSNL3
Substantia nigra medial partipsiSNM1.5
Substantia nigra reticular partipsiSNR3
Substantia nigra reticular part caudal tieripsiSNRca2
Caudal substantia nigra reticular lateral regionipsiSNRcaLa2
Substantia nigra reticular part caudal tier medial partipsiSNRcaM2
Substantia nigra reticular part caudal quarteripsiSNRcq3
Substantia nigra reticular part caudal tier central partipsiSNRcace-0.5
Substantia nigra reticular part caudolateral tieripsiSNRcaL1
Substantia nigra reticular part dorsal tieripsiSNRD2
Substantia nigra reticular part dorsolateral tieripsiSNRDL2
Substantia nigra reticular part dorsolateral tier caudal halfipsiSNRDLc2
Substantia nigra reticular part lateral tieripsiSNRL1
Substantia nigra reticular part medial tieripsiSNRm0.5
Caudal medial substantia nigra reticular partipsiSNRcam1
Substantia nigra reticular part medial tier mediallyipsiSNRmm-0.5
Substantia nigra reticular part medial tier centrallyipsiSNRmce-0.5
Substantia nigra reticular part medial tier laterallyipsiSNRmLa-0.5
Substantia nigra reticular part rostral tieripsiSNRro-0.5
Substantia nigra reticular part ventral subdivisionipsiSNRv2
Substantia nigra reticular part ventrolateral tieripsiSNRVL3
Substantia nigra reticular part ventromedial tieripsiSNRVM3
Substantia nigra reticular part peripeduncular partipsiSNRpp0.5
Substantia nigra reticular part posterior halfipsiSNRph2
Substantia nigra reticular part upper halfipsiSNRuh2
Substantia nigra rostral partipsiSNrp4
Substantia nigra ventral partipsiSNv2
Substantia nigra pars suboculomotoriaipsiSNso1
Substantia nigra pars suboculomotoria ventral partipsiSNsov1
Middle substantia nigraipsiSNmid3
Ventral tegmental area A10ipsiVTA3
Ventral tegmental area A10 caudal partipsiVTAcp1
Ventral tegmental area A10 dorsal partipsiVTAd0.5
Ventral tegmental area A10 lateral nucleiipsiVTALN2
Ventral tegmental area A10 lateral partipsiVTAL3
Ventral tegmental area A10 medial nucleiipsiVTAmn1
Interfascicular nucleusipsiIF2
Ventral tegmental area A10 middle partipsiVTAmi1
Ventral tegmental area rostral partipsiVTAR1
Ventral tegmental tailipsiVTTa1
Ventral tegmental area posterior partipsiVTAP1
Parabrachial pigmented nucleusipsiPBP3
Paranigral nucleusipsiPN2
Peripeduncular areaipsiPPA-0.5
Peripeduncular nucleusipsiPP2
Retrorubral nucleusipsiRR3
Middle part of the retrorubral fieldipsiRRmi0
Rostral retrorubral nucleusipsiRRR0
Caudal retrorubral nucleusipsiCRR3
Laterodorsal tegmental nucleusipsiLDTg1
Cholinergic neurons of the laterodorsal tegmental nucleusipsiLDTgch-0.5
Ventral tegmental nucleusipsiVTg2
Dorsal tegmental nucleus lateral partipsiDLTN2
Pedunculopontine tegmental nucleusipsiPPTg2
Pedunculopontine tegmental nucleus caudal partipsiPPTgC1
Pedunculopontine tegmental nucleus dorsal partipsiPPTgd1.5
Pedunculopontine tegmental nucleus mid levelipsiPPTgmL1.5
Pedunculopontine tegmental nucleus pars compactaipsiPPNC2
Pedunculopontine tegmental nucleus pars dissipataipsiPPNd3
Pedunculopontine tegmental nucleus rostral partipsiPPTgR1
Pedunculopontine tegmental nucleus ventral partipsiPPTgv0
Visual tegmental relay zoneipsiViTRZo0
Basal mesencephalonipsibMEC-0.5
CerebellumipsiCERE1
Cerebellar hemisphereipsiCEREBH1
Inferior cerebellar peduncleipsiicp-2
Locus coeruleusipsiLC3
Intermediate part of the anterior pole of the locus coeruleusipsiLCimap3
Dorsal part of the anterior pole of the locus coeruleusipsiLCda3
Locus coeruleus caudal part ventral partipsiLCcV-0.5
Dorsal division of the caudal locus coeruleusipsiLCcaD-0.5
Locus coeruleus dorsal partipsiLCD2
Ventral part of the posterior pole of the locus coeruleusipsiLCvp3
Intermediate part of the posterior pole of the locus coeruleusipsiLCip3
Dorsal part of the posterior pole of the locus coeruleusipsiLCdp3
Locus coeruleus rostrocaudal extentipsiLCrcE3
Reticular systemipsiRF1
Ventrolateral reticular formationipsiVLRF0.5
Mesencephalic reticular formationipsiMRF3
Deep mesencephalic nucleusipsiDpMe2
Pontine reticular nucleusipsiPRN2
Pontine reticular nucleus oral partipsiPnO3
Pontine reticular nucleus caudal partipsiPNC1
Peribrachial regionipsiPBR2
Cuneiforme nucleusipsiCnF2
Parabrachial nucleusipsiPB2
Lateral parabrachial nucleusipsiLPB3
Lateral parabrachial nucleus external partipsiLPBE-1
Parabrachial nucleus external divisonipsiPBeD0
Parabrachial nucleus medialipsiPBnMe-0.5
Medial parabrachial nucleus external partipsiMPBE-0.5
Parabrachial nucleus ventral partipsiPBV3
Gigantocellular reticular nucleusipsiGi1
Gigantocellular reticular nucleus alpha partipsiGiA1
Medullary reticular nucleusipsiMdD-2
Subnucleus reticularis dorsalisipsiSRD-0.5
MyelencephalonipsiMYC2
Paratrigeminal nucleusipsiPa5-0.5
Principal sensory trigeminal nucleusipsiPr50
Nucleus of the solitary tractipsiSol-0.5
Raphe nucleiipsiRAN2
Dorsal raphe nucleusipsiDR3
Dorsal raphe nucleus caudal partipsiDRC2
Dorsal raphe nucleus caudal part non serotoninergic populationipsiDRCnsp0.5
Dorsal raphe nucleus central partipsiDRcep2.5
Dorsal raphe nucleus dorsal partipsiDRD3
Dorsal raphe nucleus dorsal part non serotoninergic populationipsiDRDnsp0.5
Dorsal raphe nucleus dorsomedial subdivisionipsiDRdm2
Dorsal raphe nucleus dorsomedial subdivision medial partipsiDRdmMe1
Dorsal raphe nucleus dorsomedial subdivision rostral partipsiDRdmR1
Dorsal raphe nucleus dorsomedian partipsiDRdmm2
Dorsal raphe nucleus interfascicular part non serotoninergic populationipsiDRInsp0.5
Dorsal raphe nucleus lateral partipsiDRLa1
Dorsal raphe nucleus lateral wingipsiDRlw1
Dorsal raphe nucleus lateral wing non serotoninergic populationipsiDRIwnsp0.5
Dorsal raphe nucleus medial partipsiDRNM2
Dorsal raphe nucleus midrostrocaudal part non serotoninergic populationipsiDRmrcnsp0.5
Dorsal raphe nucleus rostral partipsiDRr3
Dorsal raphe nucleus rostral part non serotoninergic populationipsiDRrnsp0.5
Dorsal raphe nucleus rostral tipipsiDRrt2
Dorsal raphe nucleus rostrocaudal partipsiDRrc0.5
Dorsal raphe nucleus ventral partipsiDRV1
Dorsal raphe nucleus ventral part non serotoninergic populationipsiDRVnsp0.5
Ventral fountain portion of the dorsal raphe nucleusipsiDRVF2
Dorsal raphe nucleus ventrolateral part non serotoninergic populationipsiDRVLnsp0.5
Dorsal raphe nucleus ventromedial subdivisionipsiDRvme2
Dorsal raphe nucleus ventromedian partipsiDRvmm2
Middle part of the dorsal raphe nucleusipsiDRmidp3
Linear nucleus of the rapheipsiLIR-0.5
Rostral linear nucleus of the rapheipsiRLi-0.5
Median raphe nucleusipsiMnR2
Medial raphe nucleusipsiMeR-0.5
Superior central raphe nucleusipsiCS1.5
B6 subnucleusipsiB61
A2 noradrenergic cellsipsiA2-0.5
Cuneate nucleusipsiCu0
GracileipsiGra0
Basal forebrainipsiBAF2
Nucleus of the horizontal limb of the diagonal bandipsiHDB0
Nucleus of the vertical limb of the diagonal bandipsiVDB0
Medial septal nucleus mid-dorsal aspectipsiMSmda0
Medial preoptic nucleusipsiMPO1
Tuberomammillary nucleusipsiTuM3
Tuberomammillary nucleus diffuse partipsiTuMdif0.5
Tuberomammillary nucleus dorsomedial partipsiTBMdm1
Tuberomammillary nucleus medial partipsiTuMM1
Ventral tuberomammillary nucleusipsiVTM3
Lateral hypothalamic areaipsiLH1
Lateral hypothalamic area perifornical partipsiPFx1
Dorsomedial hypothalamic nucleus [Medial zone]ipsiDM1
Dorsomedial hypothalamic nucleus dorsomedial partipsiDMDM1
Posterior hypothalamic areaipsiPHA1
Posteromammillary caudal magnocellular nuclei of the posterior basal hypothalamusipsiPMCMC2
Posterior magnocellular nucleiipsiPHApm3
Posterior hypothalamic nucleus caudal partipsiPHCa0
Posterior hypothalamic nucleus rostral partipsiPHRo1
Ventromedial hypothalamic nucleusipsiVMH-1
Arcuate nucleusipsiArc-1
Paraventricular hypothalamic nucleusipsiPa-0.5
Paraventricular nucleus ventral partipsiPaVe-0.5
Ventral prothalamic nucleusipsiVProt1
Medial mammillary nucleusipsiMMn0
Supramammillar nucleusipsiSuM1
Supramammillar nucleus lateral part lateral subpartipsiSuMLL0
Supramammillar nucleus lateral part medial subpartipsiSuMLM0
Supramammillar nucleus medial partipsiSuMM0
A8 dopamine cells retrorubral groupipsiRRF2
A8 dopamine cells retrorubral group lateral partipsiRRFL-0.5
A8 dopamine cells retrorubral group rostral partipsiRRFr-0.5
ThalamusipsiT4
Anterodorsal thalamic nucleusipsiAD-0.5
Intralaminar nuclei of the dorsal thalamusipsiILM2
Central medial thalamic nucleusipsiCM4
Central medial thalamic nucleus lateral partipsiCMl3
Central medial thalamic nucleus rostral partipsiCMr1
Centre median nucleusipsiCeMe2
Centrolateral thalamic nucleusipsiCL3
Centrolateral thalamic nucleus bushy cellsipsiCLb-0.5
Gelatinosus thalamic nucleusipsiG-0.5
Caudolateral part of the gelatinosus thalamic nucleusipsiGCL1
Paracentral thalamic nucleusipsiPC3
Parafascicular thalamic nucleusipsiPF4
Parafascicular thalamic nucleus caudal partipsiPFc2
Parafascicular thalamic nucleus caudal part dorsolateral partipsiPFcDL2
Parafascicular thalamic nucleus dorsolateral partipsiPFdL2
Parafascicular thalamic nucleus intermediate partipsiPFi2
Parafascicular thalamic nucleus intermediate part dorsorostral regionipsiPfidr2
Parafascicular thalamic nucleus lateral partipsiPFL3
Parafascicular thalamic nucleus rostral partipsiPFr2
Rhomboid thalamic nucleusipsiRh3
Lateral group of the dorsal thalamusipsiLAT4
Posterior limitans thalamic nucleusipsiPLi-1
Posterior thalamic nuclear groupipsiPo3
Suprageniculate thalamic nucleusipsiSG2
Dorsal part of the caudal suprageniculate thalamic nucleusipsiDCSG2
Ventral part of the caudal suprageniculate thalamic nucleusipsiCSGV2
Dorsal part of the rostral suprageniculate thalamic nucleusipsiDoRSG2
Dorsal part of the most rostral suprageniculate thalamic nucleusipsiDMRSG2
Ventral part of the most rostral suprageniculate thalamic nucleusipsiVMRSG2
Ventral part of the rostral suprageniculate thalamic nucleusipsiVeRSG2
Medial group of the dorsal thalamusipsiMED3
Mediodorsal thalamic nucleusipsiMD3
Intermediodorsal thalamic nucleusipsiIMD3
Mediodorsal thalamic nucleus central partipsiMDC-0.5
Mediodorsal thalamic nucleus lateral partipsiMDL-0.5
Mediodorsal thalamic nucleus medial partipsiMDM-0.5
Submedius thalamic nucleusipsiSub-0.5
Submedius thalamic nucleus dorsal partipsiSubD-0.5
Submedius thalamic nucleus ventral partipsiSubV-0.5
Midline group of the dorsal thalamusipsiMTN2
Paratenial thalamic nucleusipsiPT3
Paraventricular thalamic nucleusipsiPV3
Paraventricular thalamic nucleus anterior partipsiPVA1.5
Paraventricular thalamic nucleus caudal partipsiPVca2
Paraventricular thalamic nucleus dorsal partipsiPVdo2
Paraventricular thalamic nucleus posterior partipsiPVP2
Paraventricular thalamic nucleus rostral partipsiPVr2
Paraventricular thalamic nucleus ventral partipsiPVV2
Reuniens thalamic nucleusipsiRe3
Ventral anterior-lateral complex of the thalamusipsiVAL0.5
Ventro anterior thalamic nucleusipsiVA-0.5
Ventrolateral thalamic nucleusipsiVL3
Ventrolateral thalamic nucleus medial partipsiVLme1
Anterior part of the ventrolateral thalamic nucleusipsiVLa1
Ventral posterior thalamic complexipsiVPT1
Ventral posterior thalamic nucleus parvicellular partipsiVPPC-0.5
Ventrobasal complexipsiVB2
Ventral posterolateral thalamic nucleusipsiVPL2
Ventral posteromedial thalamic nucleusipsiVPM2
Ventromedial thalamic nucleusipsiVM3
Ventromedial thalamic nucleus caudal two thirdsipsiVMctt-0.5
Ventromedial thalamic nucleus lateral partipsiVML-2
Central ventromedial thalamic nucleusipsiCeVM1
Ventroanterior ventromedial thalamic nucleusipsiVMva-2
Anterior part of the ventromedial thalamic nucleusipsiVMa3
Ventromedial thalamic nucleus parvicellular divisionipsiVMp3
Ethmoid thalamic nucleusipsiEth2
Intralaminar nucleiipsiILN3
Centrolateral intralaminar nucleusipsiCLILN-0.5
Intralaminar nuclei caudal partipsiILNc-0.5
Posterior intralaminar thalamic nucleusipsiPIL3
Parafascicular centre-median complexipsiPFCM3
Posterior intralaminar thalamic nucleus dorsal tipipsiPILdt2
Posterior intralaminar thalamic nucleus ventrolateral wingipsiPILvLw2.5
Posterior intralaminar thalamic nucleus ventromedial wingipsiPILvmw2
Parafascicular nucleusipsiPFa-0.5
Lateral thalamic nuclear groupipsiLTNG2
Lateral posterior thalamic nucleusipsiLP2
Caudomedial lateral posterior thalamic nucleusipsiLPcm2
Central part of the lateral posterior thalamic nucleus caudal partipsiCLPca2
Dorsomedial part of the lateral posterior thalamic nucleus caudal partipsiDMLPca2
Ventromedial part of the lateral posterior thalamic nucleus caudal partipsiVMLPca2
Lateral posterior thalamic nucleus lateral partipsiLPTL-0.5
Lateral posterior thalamic nucleus laterocaudal partipsiLPLC2
Lateral posterior thalamic nucleus laterorostral partipsiLPLR2
Lateral posterior thalamic nucleus mediorostral partipsiLPMR2
Central part of the lateral posterior thalamic nucleus rostral partipsiCLPR2
Dorsomedial part of the lateral posterior thalamic nucleus rostral partipsiDMLPR2
Central part of the most rostral part of the lateral posterior thalamic nucleusipsiCMoRLP2
Dorsomedial part of the most rostral part of the lateral posterior thalamic nucleusipsiDMMoRLP2
Lateral part of the most rostral part of the lateral posterior thalamic nucleusipsiMoRLLP2
Ventromedial part of the most rostral part of the lateral posterior thalamic nucleusipsiVMMoRLP2
Ventromedial part of the lateral posterior thalamic nucleus rostral partipsiVMLPR2
Lateral posterior thalamic nucleus ventral partipsiLPV-0.5
Rostromedial lateral posterior thalamic nucleusipsiLPrm-0.5
Laterodorsal thalamic nucleusipsiLD2
Posterior groupipsiPTG-0.5
Ventral thalamusipsiVNT2
Reticular thalamic nucleusipsiRt0
Subparafascicular thalamic nucleusipsiSPF2
Lateral subparafascicular thalamic nucleusipsiSPFL2
Subparafascicular thalamic nucleus rostral partipsiSPFr0
Ventral medial nucleus of the thalamusipsiVMT-0.5
Zona incertaipsiZI3
Nucleus of the fields of ForelipsiF3
Forel field H2ipsiFFH21
Zona incerta caudal partipsiZIC1
Lateral habenular nucleusipsiLHb0
Pretectal regionipsiPRT0
Anterior pretectal nucleus dorsal partipsiAPTD2
External capsuleipsiec-0.5
Corpus callosumipsicc-0.5
Medial lemniscusipsiml-0.5
Ventral part of the medial terminal nucleus of the accessory optic tractipsiMTV0
Dorsal part of the medial terminal nucleus of the accessory optic tractipsiMTD0
Amygdaloid complexipsiAC1
Basal nucleusipsiBnc3
Accessory basal nucleusipsiAB3
Basal nucleus parvicellular partipsiBpc-0.5
Basolateral amygdaloid nucleusipsiBL3
Basolateral nucleus rostral partipsiBLRP2.5
Posterior basolateral nucleusipsiBLP1
Ventral basolateral nucleusipsiBLV-0.5
Basomedial amygdaloid nucleusipsiBM-0.5
Basomedial nucleus magnocellular division rostral partipsiABmcrp-0.5
Posterior basomedial nucleusipsiBMP2
Lateral amygdaloid nucleusipsiLA2
Bed nucleus of the stria terminalis lateral divisionipsiBSTL1
Central amygdaloid nucleusipsiCe0
Nucleus of the lateral olfactory tractipsiLOT2
Nucleus of the lateral olfactory tract layer 3ipsiLOTL3-3
Globus pallidusipsiGP3
Caudal globus pallidusipsiGPc1.5
Caudal globus pallidus lateral partipsiGPcL2
Caudal globus pallidus medial partipsiGPcm1
Globus pallidus anterior portion lateral partipsiGPapL2
Lateral globus pallidusipsiLGP3
Lateral globus pallidus arkypallidal neurones of the rostral calbinding positive partipsiLGPRcpar-0.5
Extrnal pallidus arkypallidal neuronesipsiLGPar-0.5
Lateral globus pallidus arkypallidal neurones of the caudal calbindin positive partipsiLGPCcpar-0.5
Lateral globus pallidus arkypallidal neurones of the middle calbindin negative partipsiLGPmicnar-0.5
Medial globus pallidusipsiMGP2
Medial globus pallidus caudal partipsiMGPc1
Medial globus pallidus lateral partipsiMGPl1
Medial globus pallidus medial partipsiMGPm2
Medial globus pallidus rostral partipsiMGPr2
Peripallidal regionipsiPePa3
Subpallidal regionipsiSuPa0
Ventral pallidumipsiVP2
Globus pallidus outer neuronsipsiGPon-0.5
Globus pallidus inner neruonsipsiGPin-0.5
Accumbens nucleusipsiAc-0.5
Accumbens nucleus coreipsiAcbC-0.5
Dorsal coreipsiAcbCd3
Accumbens nucleus shellipsiAcbSh-0.5
Lateral nucleus accumbensipsiAcl-0.5
Caudate putamenipsiCPu3
Dorsal striatumipsiCPud-0.5
Rostral striatumipsiCPur-0.5
Fundus of the striatumipsiFS-0.5
Subthalamic nucleusipsiSTh2
Parasubthalamic nucleusipsiPSTh2
Cerebral cortexipsiCEC3
AllocortexipsiALLOCX-0.5
HippocampusipsiHIPP-0.5
Field CA1 of hippocampusipsiCA1-0.5
SubiculumipsiS-0.5
Subiculum ventral partipsiSv3
Fimbria lateral to the hippocampusipsifimblH-2
Indusium griseumipsiIG-2
Entorhinal cortexipsiEnt1
Piriform cortexipsiPir-0.5
Retrosplenial cortexipsiRSCx-0.5
Midrostrocaudal part of the retrosplenial dysgranular cortexipsiRSdysmrc2
Cerebral cortex layer 3ipsiCCL3-0.5
Cerebral cortex layer 5ipsiCCL52
Limbic regionsipsiLR-0.5
Cingulate cortexipsiCg2
Anterior cingulate cortexipsiACC3
Anterior cingulate cortex anterior part layer 5ipsiACCaL51.5
Anterior cingulate cortex layer 6ipsiACCL61.5
Cingulate cortex area 1ipsiCg11.5
Cingulate cortex area 1 caudal partipsiCg1c3
Cingulate cortex area 2ipsiCg21.5
Cingulate cortex area 2 caudal partipsiCg2c3
Cingulate cortex area 3 layer 5ipsiCg3L53
Cingulate cortex area 3 layer 6ipsiCg3L60
Cingulate cortex layer 3ipsiCgL32
Cingulate cortex layer 4ipsiCgL42
Cingulate cortex layer 5ipsiCgL53
Cingulate cortex layer 5 aipsiCgL5a3
Posterior cingulate cortexipsiPCC3
Prelimbic cortexipsiPrL3
Prelimbic cortex dorsal partipsiPrLd3
Prelimbic cortex dorsal part layer 5ipsiPrLdL5-0.5
Prelimbic cortex ventral partipsiPrLv2
Infralimbic cortexipsiIL3
Infralimbic cortex deep layersipsiILDL0
NeocortexipsiNEOCX3
Frontal association cortexipsiFrA3
Frontal association cortex layer 3ipsiFrALL32
Frontal association cortex layer 4ipsiFrALL42
Frontal association cortex layer 5ipsiFrALL53
Frontal cortex area 1ipsiFr13
Frontal cortex area 1 layer 3ipsiFr1L3-0.5
Frontal cortex area 2ipsiFr23
Frontal cortex area 2 rostral partipsiFr2R3
Frontal cortex area 2 layer 5ipsiFr2L53
Frontal cortex area 2 middle portionipsiFr2mi3
Frontal cortex area 3ipsiFr33
Frontal cortex area 3 layer 5ipsiFr3L53
Border of frontal cortex 2ipsiFr2B3
Parietal association cortexipsiPtA3
Parietal cortex posterior areaipsiParP4
Parietal cortex posterior area lateral portionipsiParPL3
Parietal cortex posterior area medial portionipsimPPC3
Parietal cortex posterior area dorsal part layer 5ipsiParPDL53
Parietal cortex posterior area rostral part layer 5ipsiParPRL53
Parietal association cortex layer 3ipsiParPLa32
Parietal association cortex layer 4ipsiParPLa42
Parietal association cortex layer 5ipsiParPLa53
Parietal association cortex layer 6ipsiParPLa62
Parietal association cortex layer 2ipsiParPLa22
Parietal cortex area 1ipsiPar13
Parietal cortex area 1 caudal partipsiPar1c3
Parietal cortex area 1 layer 5ipsiPar1L53
Parietal cortex area 1 rostral partipsiPar1R2
Temporal cortexipsiTE-0.5
Temporal association area 2ipsiTe2-0.5
Temporal association area 3ipsiTe3-0.5
Temporal association area 3 rostral part layer 5ipsiTe3RL53
Temporal association cortex 1ipsiTeA-0.5
Deep gray matter of the temporal association cortex 1ipsiTeAdL-2
Ventral temporal association cortexipsiTev1
Auditory regionsipsiAU-0.5
Insular cortexipsiICX-0.5
Agranular insular cortexipsiAI-0.5
Agranular insular cortex dorsal partipsiAID-0.5
Agranular insular cortex layer 5ipsiAIL53
Agranular insular cortex rostral partipsiRAIC2
Agranular insular cortex ventral partipsiAIV-0.5
Agranular insular cortex ventral part jaw movement areaipsiAIVjm-0.5
Anterior insular cortex layer 2ipsiICXaL22
Anterior insular cortex layer 3ipsiICXaL32
Anterior insular cortex layer 4ipsiICXaL42
Anterior insular cortex layer 5ipsiICXaL53
Anterior insular cortex layer 6ipsiICXaL62
Middle part of the caudal one-third of the dysgranular insular cortexipsiDIvCotMi-2
Caudal part of the caudal one-third of the dysgranular insular cortexipsiDIvCotC-2
Rostral two-thirds of the dysgranular insular cortexipsiRDIrtt-2
Caudal part of the caudal one-third of the granular insular cortexipsiGICotC-2
Middle part of the caudal one-third of the granular insular cortexipsiGICotM-2
Rostral two-thirds of the granular insular cortexipsiRttGI-2
Dorsal part of the granular insular cortex rostroventrally adjacent to the rostralmost part of S2ipsidGlrvs23
Insular cortex layer 2ipsiICXL22
Insular cortex layer 3ipsiICXL32
Insular cortex layer 4ipsiICXL42
Insular cortex layer 5ipsiICXL53
Insular cortex layer 6ipsiICXL62
Perirhinal cortexipsiA352
Perirhinal cortex anterior portionipsiPRha3
Perirhinal cortex anterior portion layer 3 to layer 5ipsiPRhaL3L51
Perirhinal cortex anterior portion layer 5ipsiPRhaL52.5
Perirhinal cortex anterior portion layer 5 to layer 6ipsiPRhaL5L62
Perirhinal cortex anterior portion layer 6ipsiPRhaL61
Prefrontal cortexipsiPFC3
Prefrontal cortex layer 2ipsiPFCL22
Prefrontal cortex layer 3ipsiPFCL32
Prefrontal cortex layer 5ipsiPFCL53
Prefrontal cortex layer 6ipsiPFCL63
Somatomotoric regionsipsiSMR3
Motoric regionsipsiM2
Lateral prefrontal cortexipsilPFC-2
Lateral agranular prefrontal cortexipsiAGl3
Caudal forelimb motor areaipsiCFMA2
Forelimb motor cortex layer 5ipsiFMCxL53
Rostral forelimb motor areaipsiRFMA2
Hindlimb motor cortex layer 5ipsiHMCxL53
Caudal hindlimb motor cortexipsiCHMCx-0.5
Lateral agranular prefrontal cortex layer 2ipsiAGlL22
Lateral agranular prefrontal cortex layer 3ipsiAGlL32
Lateral agranular prefrontal cortex layer 5ipsiAGlL53
Lateral agranular prefrontal cortex layer 5aipsiAGlL5a4
Lateral agranular prefrontal cortex layer 5bipsiAGlL5b1.5
Lateral agranular prefrontal cortex layer 6ipsiAGlL63
Jaw movement motor cortexipsiJMCx2.5
Whisker motor cortex subfieldsipsiWMCxS2
Whisker motor cortex D2ipsiWMCxD2-0.5
Whisker motor cortex D3ipsiWMCxD3-0.5
Whisker motor cortex D4ipsiWMCxD4-0.5
Whisker motor cortex D5ipsiWMCxD5-0.5
Medial prefrontal cortexipsimPFC2
Medial prefrontal cortex layer 5ipsimPFCL53
Medial prefrontal cortex layer 5 type 2 pyramidal cellipsimPFCL5t2-0.5
Medial prefrontal cortex layer 6ipsimPFCL62
Medial prefrontal cortex layer 3ipsimPFCL32
Medial prefrontal cortex layer 4ipsimPFCL42
Medial prefrontal cortex layer 2ipsimPFCL22
Motoric regions layer 5ipsiMRL54
Motoric regions layer 6ipsiMRL62
Motoric regions layer 4ipsiMRL42
Medial agranular prefrontal cortexipsiAGm4
Medial agranular prefrontal cortex layer 3ipsiAGmL32
Medial agranular prefrontal cortex layer 5 aipsiAGmL5a3
Sensory regionsipsiSR3
Primary somatosensory cortexipsiS13
Primary somatosensory cortex barrel fieldipsiS1BF2
Posteromedial barrel subfieldipsiPMBSF-0.5
Posteromedial barrel subfield A1 layer 5aipsiPMBSFA1L5a-0.5
Posteromedial barrel subfield A2 layer 5aipsiPMBSFA2L5a-0.5
Posteromedial barrel subfield A3 layer 5aipsiPMBSFA3L5a-0.5
Posteromedial barrel subfield A4 layer 5aipsiPMBSFA4L5a-0.5
Posteromedial barrel subfield B1 layer 5aipsiPMBSFB1L5a-0.5
Posteromedial barrel subfield B2 layer 5aipsiPMBSFB2L5a-0.5
Posteromedial barrel subfield B3 layer 5aipsiPMBSFB3L5a-0.5
Posteromedial barrel subfield B4 layer 5aipsiPMBSFB4L5a-0.5
Posteromedial barrel subfield C1 layer 5aipsiPMBSFC1L5a-0.5
Posteromedial barrel subfield C2 layer 5aipsiPMBSFC2L5a-0.5
Posteromedial barrel subfield C3 layer 5aipsiPMBSFC3L5a-0.5
Posteromedial barrel subfield C4 layer 5aipsiPMBSFC4L5a-0.5
Posteromedial barrel subfield C5 layer 5aipsiPMBSFC5L5a-0.5
Posteromedial barrel subfield D1 layer 5aipsiPMBSFD1L5a-0.5
Posteromedial barrel subfield D2 layer 5aipsiPMBSFD2L5a-0.5
Posteromedial barrel subfield D3 layer 5aipsiPMBSFD3L5a-0.5
Posteromedial barrel subfield D4 layer 5aipsiPMBSFD4L5a-0.5
Posteromedial barrel subfield D5 layer 5aipsiPMBSFD5L5a-0.5
Posteromedial barrel subfield D6 layer 5aipsiPMBSFD6L5a-0.5
Posteromedial barrel subfield E1 layer 5aipsiPMBSFE1L5a-0.5
Posteromedial barrel subfield E2 layer 5aipsiPMBSFE2L5a-0.5
Posteromedial barrel subfield E3 layer 5aipsiPMBSFE3L5a-0.5
Posteromedial barrel subfield E4 layer 5aipsiPMBSFE4L5a-0.5
Posteromedial barrel subfield E5 layer 5aipsiPMBSFE5L5a-0.5
Posteromedial barrel subfield E6 layer 5aipsiPMBSFE6L5a-0.5
Primary somatosensory cortex barrel field layer 5ipsiS1BF5-0.5
Primary somatosensory cortex jaw regionipsiS1J-0.5
Primary somatosensory cortex layersipsiS1L2
Primary somatosensory cortex layer 5ipsiS1L53
Primary somatosensory cortex layer 5 aipsiS1L5a3
Primary somatosensory cortex lower part of layer 5 aipsiS1L5aL-0.5
Primary somatosensory cortex layer 5 b upper partipsiS1L5bu-0.5
Primary somatosensory cortex layer 6ipsiS1L62
Primary somatosensory cortex layer 4ipsiS1L42
Primary somatosensory cortex forelimb regionipsiS1FL2
Primary somatosensory cortex hindlimb regionipsiS1HL3
Secondary somatosensory cortexipsiS22
Secondary somatosensory cortex layersipsiS2L2
Secondary somatosensory cortex layer 5ipsiS2L54
Secondary somatosensory cortex layer 5aipsiS2L5a3
Secondary somatosensory cortex layer 6ipsiS2L62
Somatosensory cortex layer 5ipsiSRL5-0.5
Somatosensory cortex layer 5aipsiSRL5a-0.5
Somatosensory cortex layer 5a lower partipsiSRL5aL-0.5
Somatosensory cortex upper part of layer 5bipsiSRuL5b2
Visual regionsipsiVR2
Dorso-lateral sectorof the occipital cortexipsiVRDL0.5
Primary visual cortexipsiV10.5
Primary visual cortex lateral partipsiV1La-0.5
Visual regions layer 5ipsiVRL53
Secondary visual cortexipsiV2-0.5
Secondary visual cortex medial areaipsiV2M3
Secondary visual cortex lateral areaipsiV2L-1
Primary visual cortex monocular areaipsiV1M1
Orbital cortexipsiOrC-0.5
Lateral orbital cortexipsiLO-0.5
Medial orbital cortexipsiMO3
Ventral orbital cortexipsiVO3
Ventrolateral orbital areaipsiVLO3
Neocortex layer 3ipsiNEOCXL3-0.5
Neocortex layer 5ipsiNEOCXL53
Neocortex layer 6ipsiNEOCXL61
Dorsal geniculate nucleus lateral partipsiDLGl-0.5
Marginal zone of the medial geniculateipsiMZMG-1
Medial geniculate nucleusipsiMG2
Medial geniculate nucleus dorsal partipsiMGD2
Central dorsal tip of the medial geniculate nucleus dorsal partipsiCDtMGD2
Central part of the caudal third of the medial geniculate nucleus dorsal partipsiMGDcct2
Lateral part of the caudal third of the medial geniculate nucleus dorsal partipsiMGDLct2
Medial part of the caudal third of the medial geniculate nucleus dorsal partipsiMGDMct2
Ventrolateral part of the caudal third of the medial geniculate nucleus dorsal partipsiMGDVLct3
Dorsal half of the medial geniculate nucleus dorsal partipsiMGDDh2
Mediodorsal tip of the medial geniculate nucleus dorsal partipsiMDtMGD0
Medial geniculate nucleus medial partipsiMGM3
Caudal part of the dorsal part of the medial geniculate nucleus medial partipsiCDMGM2
Middle rostral part of the dorsal part of the medial geniculate nucleus medial partipsiDMGMmir2
Most rostral of the dorsal part of the medial geniculate nucleus medial partipsiMGMmrd2
Caudal part of the ventral part of the medial geniculate nucleus medial partipsiCVMGM2
Middle rostral part of the ventral part of the medial geniculate nucleus medial partipsiVMGMmir2
Most rostral part of the ventral part of the medial geniculate nucleus medial partipsiVMGMmr2
Interpeduncular nucleusipsiIP-0.5
Olfactory cortexipsiOcx-0.5
Lateral septal nucleusipsiLS0.5
Caudal portion of the lateral ventricleipsiCaLV2
Pyramidal tractipsipy-0.5
Spinoreticular tractipsisrT-2
Spinal cord layers C1ipsiSCLC12
Spinal cord layers C2ipsiSCLC22
Spinal cord layers C3ipsiSCLC31
Spinal cord layers C4ipsiSCLC41
Spinal cord layers C5ipsiSCLC51
Spinal cord layers C6ipsiSCLC61
Spinal cord layers C7ipsiSCLC71
Spinal cord layers C8ipsiSCLC81
Spinal cord layers T1ipsiSCLT11
Thoracal segment 6ipsiT60.5
Thoracal segment 7ipsiT70.5
Thoracal segment 8ipsiT80.5
Thoracal segment 9ipsiT90.5
Dorsal root L4ipsidrL4-0.5
Lumbar segment 6ipsiL60
LungipsiOrgsLung-10
Trachea sideipsiOrgsTras4

Key for weights

ValueWeight
-3 unknown
-2 fibers of passage
-1 not clear
-0.5 exists
0 not present
0.5 very light
1 light / sparse
1.5 light / moderate
2 moderate / dense
2.5 moderate / strong
3 strong
4 very strong





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