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Rat connectome

Reticulotegmental nucleus left

Abbreviation	RETn
Color
Superior regions	Pontine tegmental field

Synonyms	Abbr.	Language
	TRN
	PTRN
	PTR
Pontine tegmental reticular nucleus of Bechterew
Pontine reticulotegmental nucleus
Pontine tegmental reticular nucleus		Eng
Tegmental reticular nucleus	TRN	Eng
Tegmental reticular nucleus		Eng
Reticulotegmental nucleus of the pons		Eng
Reticulotegmental nucleus	RETn	Eng
Pontine tegmental reticular nucleus		Eng

Subregions	Side
Reticulotegmental nucleus of the pons	left
Medial portion of the reticulotegmental nucleus	left

Output to

Name	Side	Abbr.	Weight
Medial longitudinal fasciculus	ipsi	mlf	-0.5
Nucleus of Darkschewitsch	ipsi	Dk	0
Oculomotor nucleus	ipsi	3	1
Medial pontine nucleus	ipsi	MPoN	-2
Dorsal tegmental nucleus central part	ipsi	DTgC	1
Dorsal tegmental nucleus ventromedial part	ipsi	DTgVM	-0.5
Edinger Westphal nucleus	ipsi	EW	0
Cerebellum	ipsi	CERE	-0.5
Simple lobule	ipsi	Sim	3
Nucleus incertus	ipsi	NI	-0.5
Dorsomedial tegmental area	ipsi	DMTg	-0.5
Prepositus nucleus	ipsi	Pr	1
Parabrachial nucleus caudal part	ipsi	PBca	0
Medial vestibular nucleus	ipsi	MVe	1
Medial preoptic nucleus	ipsi	MPO	0
Medial mammillary nucleus lateral part	ipsi	ML	-0.5
Parafascicular thalamic nucleus	ipsi	PF	-0.5
Reuniens thalamic nucleus caudomedial division	ipsi	Recm	1
Reunienes thalamic nucleus rostromedial division	ipsi	Rerm	1
Primary visual cortex	ipsi	V1	1
Intermediolateral cell column C1	ipsi	IMLC1	-0.5
Intermediate zone C1	ipsi	izVHC1	-0.5
Intermediolateral cell column C2	ipsi	IMLC2	-0.5
Intermediate zone C2	ipsi	izVHC2	-0.5
Intermediolateral cell column C3	ipsi	IMLC3	-0.5
Intermediate zone C3	ipsi	izVHC3	-0.5
Intermediolateral cell column C4	ipsi	IMLC4	-0.5
Intermediate zone C4	ipsi	izVHC4	-0.5
Intermediolateral cell column C5	ipsi	IMLC5	-0.5
Intermediate zone C5	ipsi	izVHC5	-0.5
Intermediolateral cell column C6	ipsi	IMLC6	-0.5
Intermediate zone C6	ipsi	izVHC6	-0.5
Cervical segment 7	ipsi	CS7	-1
Intermediolateral cell column C7	ipsi	IMLC7	-0.5
Intermediate zone C7	ipsi	izVHC7	-0.5
Intermediolateral cell column C8	ipsi	IMLC8	-0.5
Intermediate zone C8	ipsi	izVHC8	-0.5
Intermediolateral cell column T1	ipsi	IMLT1	-0.5
Intermediate zone T1	ipsi	izVHT1	-0.5
Intermediolateral cell column T2	ipsi	IMLT2	-0.5
Intermediate zone T2	ipsi	izVHT2	-0.5
Intermediolateral cell column T3	ipsi	IMLT3	-0.5
Intermediate zone T3	ipsi	izVHT3	-0.5
Intermediolateral cell column T4	ipsi	IMLT4	-0.5
Intermediate zone T4	ipsi	izVHT4	-0.5
Intermediolateral cell column T5	ipsi	IMLT5	-0.5
Intermediate zone T5	ipsi	izVHT5	-0.5
Intermediolateral cell column T6	ipsi	IMLT6	-0.5
Intermediate zone T6	ipsi	izVHT6	-0.5
Intermediolateral cell column T7	ipsi	IMLT7	-0.5
Intermediate zone T7	ipsi	izVHT7	-0.5
Intermediolateral cell column T8	ipsi	IMLT8	-0.5
Intermediate zone T8	ipsi	izVHT8	-0.5
Intermediolateral cell column T9	ipsi	IMLT9	-0.5
Intermediate zone T9	ipsi	izVHT9	-0.5
Intermediolateral cell column T10	ipsi	IMLT10	-0.5
Intermediate zone T10	ipsi	izVHT10	-0.5
Intermediolateral cell column T11	ipsi	IMLT11	-0.5
Intermediate zone T11	ipsi	izVHT11	-0.5
Intermediolateral cell column T12	ipsi	IMLT12	-0.5
Intermediate zone T12	ipsi	izVHT12	-0.5
Intermediolateral cell column T13	ipsi	IMLT13	-0.5
Intermediate zone T13	ipsi	izVHT13	-0.5
Intermediolateral cell column L1	ipsi	IMLL1	-0.5
Lumbar dorsal commissural nucleus L1	ipsi	LDComL1	-0.5
Spinal cord layers L1	ipsi	SCLL1	-0.5
Intermediate zone L1	ipsi	izVHL1	-0.5
Intermediolateral cell column L2	ipsi	IMLL2	-0.5
Lumbar dorsal commissural nucleus L2	ipsi	LDComL2	-0.5
Spinal cord layers L2	ipsi	SCLL2	-0.5
Intermediate zone L2	ipsi	izVHL2	-0.5
Intermediolateral cell column L3	ipsi	IMLL3	-0.5
Intermediate zone L3	ipsi	izVHL3	-0.5
Intermediolateral cell column L4	ipsi	IMLL4	-0.5
Intermediate zone L4	ipsi	izVHL4	-0.5
Intermediolateral cell column L5	ipsi	IMLL5	-0.5
Intermediate zone L5	ipsi	izVHL5	-0.5
Intermediolateral cell column L6	ipsi	IMLL6	-0.5
Intermediate zone L6	ipsi	izVHL6	-0.5
Intermediolateral cell column S1	ipsi	IMLS1	-0.5
Intermediate zone S1	ipsi	izVHS1	-0.5
Intermediolateral cell column S2	ipsi	IMLS2	-0.5
Intermediate zone S2	ipsi	izVHS2	-0.5
Intermediolateral cell column S3	ipsi	IMLS3	-0.5
Intermediate zone S3	ipsi	izVHS3	-0.5
Intermediolateral cell column S4	ipsi	IMLS4	-0.5
Intermediate zone S4	ipsi	izVHS4	-0.5
Intermediolateral cell column Co1	ipsi	IMLCo1	-0.5
Intermediate zone Co1	ipsi	izVHCo1	-0.5
Intermediolateral cell column Co2	ipsi	IMLCo2	-0.5
Intermediate zone Co2	ipsi	izVHCo2	-0.5
Intermediolateral cell column Co3	ipsi	IMLCo3	-0.5
Intermediate zone Co3	ipsi	izVHCo3	-0.5
Simple lobule	contra	Sim	1
Nucleus incertus pars dissipata	contra	NId	-3
Prepositus nucleus	contra	Pr	1
Cervical segment 7	contra	CS7	-1

Input from

Name	Side	Abbr.	Weight
Dorsal terminal nucleus of the accessory optic tract	ipsi	DT	-3
Periaqueductal gray	ipsi	PAG	-1
Dorsal periaqueductal gray caudal part	ipsi	DPAGC	0
Dorsolateral periaqueductal gray caudal part	ipsi	PAGdlc	0
Dorsolateral periaqueductal gray rostral part	ipsi	PAGdlr	0
Ventrolateral periaqueductal gray caudal part	ipsi	PAGvlc	0.5
Ventrolateral periaqueductal gray rostral part	ipsi	PAGvlr	0
Superior colliculus	ipsi	SC	3
Superior colliculus intermediate layers	ipsi	SCi	2
Superior colliculus deep layers	ipsi	SCd	2
Retrorubral nucleus	ipsi	RR	2
Laterodorsal tegmental nucleus	ipsi	LDTg	-1
Edinger Westphal nucleus	ipsi	EW	-0.5
Lateral cerebellar nucleus	ipsi	CERL	-0.5
Nucleus incertus pars compacta	ipsi	NIc	0.5
Nucleus incertus pars dissipata	ipsi	NId	1
Mesencephalic reticular formation	ipsi	MRF	2
Cuneiforme nucleus	ipsi	CnF	-0.5
Area postrema	ipsi	AP	0
Spinal vestibular nucleus	ipsi	SpVe	1
Vestibular nuclei	ipsi	Vnc	3
Superior vestibular nucleus	ipsi	SuVe	3
Medial vestibular nucleus	ipsi	MVe	1
Lateral vestibular nucleus	ipsi	LVe	2
Olivary pretectal nucleus	ipsi	OPT	-1
Medial preoptic nucleus	ipsi	MPO	1
Lateral hypothalamic area	ipsi	LH	1
Lateral hypothalamic area perifornical part	ipsi	PFx	1
Dorsomedial hypothalamic nucleus [Medial zone]	ipsi	DM	1
Dorsomedial hypothalamic nucleus dorsomedial part	ipsi	DMDM	1
Posterior hypothalamic area	ipsi	PHA	1
Mammillary body	ipsi	CMAM	-0.5
Medial mammillary nucleus	ipsi	MMn	-0.5
Ventral part of the lateral geniculate complex	ipsi	LGv	2
Lateral posterior thalamic nucleus	ipsi	LP	-1
Subparafascicular thalamic nucleus magnocellular part	ipsi	SPFm	-0.5
Subparafascicular thalamic nucleus parvicellular part	ipsi	SPFp	-0.5
Zona incerta	ipsi	ZI	3
Nucleus of the fields of Forel	ipsi	F	2
Nucleus of the optic tract	ipsi	OT	2
Pretectal region	ipsi	PRT	2
Anterior pretectal nucleus	ipsi	APT	2
Medial pretectal nucleus	ipsi	MPT	0
Posterior pretectal nucleus	ipsi	PPT	-1
Accessory optic system	ipsi	AOS	-0.5
Lateral terminal nucleus of the accessory optic tract	ipsi	LTeN	-3
Retrosplenial agranular cortex layer 5	ipsi	RSAL5	0.5
Area 29d layer 5	ipsi	A29dL5	0
Retrosplenial granular cortex layer 5	ipsi	RSGL5	0.5
Cingulate cortex layer 5	ipsi	CgL5	1.5
Primary auditory cortex layer 5	ipsi	Au1L5	0.5
Secondary auditory cortex layer 5	ipsi	Au2L5	0
Agranular insular cortex layer 5	ipsi	AIL5	0.5
Perirhinal cortex layer 5	ipsi	A35L5	0
Forelimb motor cortex layer 5	ipsi	FMCxL5	0.5
Hindlimb motor cortex layer 5	ipsi	HMCxL5	1
Lateral agranular prefrontal cortex layer 5	ipsi	AGlL5	1
Medial agranular prefrontal cortex layer 5	ipsi	AGmL5	1
Primary somatosensory cortex layer 5	ipsi	S1L5	0.5
Secondary somatosensory cortex layer 5	ipsi	S2L5	1
Primary visual cortex	ipsi	V1	-1
Secondary visual cortex medial area layer 5	ipsi	V2ML5	0
Secondary visual cortex lateral area layer 5	ipsi	V2LL5	0
Medial orbital cortex	ipsi	MO	0
Ventral orbital cortex	ipsi	VO	0
Nucleus of the posterior commissure	ipsi	PCom	2
Ventral lateral geniculate nucleus	ipsi	VLG	2
Olfactory tubercle	ipsi	TuO	2
Intermediolateral cell column C1	ipsi	IMLC1	-0.5
Intermediate zone C1	ipsi	izVHC1	-0.5
Intermediolateral cell column C2	ipsi	IMLC2	-0.5
Intermediate zone C2	ipsi	izVHC2	-0.5
Intermediolateral cell column C3	ipsi	IMLC3	-0.5
Intermediate zone C3	ipsi	izVHC3	-0.5
Intermediolateral cell column C4	ipsi	IMLC4	-0.5
Intermediate zone C4	ipsi	izVHC4	-0.5
Intermediolateral cell column C5	ipsi	IMLC5	-0.5
Intermediate zone C5	ipsi	izVHC5	-0.5
Intermediolateral cell column C6	ipsi	IMLC6	-0.5
Intermediate zone C6	ipsi	izVHC6	-0.5
Intermediolateral cell column C7	ipsi	IMLC7	-0.5
Intermediate zone C7	ipsi	izVHC7	-0.5
Intermediolateral cell column C8	ipsi	IMLC8	-0.5
Intermediate zone C8	ipsi	izVHC8	-0.5
Intermediolateral cell column T1	ipsi	IMLT1	-0.5
Intermediate zone T1	ipsi	izVHT1	-0.5
Intermediolateral cell column T2	ipsi	IMLT2	-0.5
Intermediate zone T2	ipsi	izVHT2	-0.5
Intermediolateral cell column T3	ipsi	IMLT3	-0.5
Intermediate zone T3	ipsi	izVHT3	-0.5
Intermediolateral cell column T4	ipsi	IMLT4	-0.5
Intermediate zone T4	ipsi	izVHT4	-0.5
Intermediolateral cell column T5	ipsi	IMLT5	-0.5
Intermediate zone T5	ipsi	izVHT5	-0.5
Intermediolateral cell column T6	ipsi	IMLT6	-0.5
Intermediate zone T6	ipsi	izVHT6	-0.5
Intermediolateral cell column T7	ipsi	IMLT7	-0.5
Intermediate zone T7	ipsi	izVHT7	-0.5
Intermediolateral cell column T8	ipsi	IMLT8	-0.5
Intermediate zone T8	ipsi	izVHT8	-0.5
Intermediolateral cell column T9	ipsi	IMLT9	-0.5
Intermediate zone T9	ipsi	izVHT9	-0.5
Intermediolateral cell column T10	ipsi	IMLT10	-0.5
Intermediate zone T10	ipsi	izVHT10	-0.5
Intermediolateral cell column T11	ipsi	IMLT11	-0.5
Intermediate zone T11	ipsi	izVHT11	-0.5
Intermediolateral cell column T12	ipsi	IMLT12	-0.5
Intermediate zone T12	ipsi	izVHT12	-0.5
Intermediolateral cell column T13	ipsi	IMLT13	-0.5
Intermediate zone T13	ipsi	izVHT13	-0.5
Intermediolateral cell column L1	ipsi	IMLL1	-0.5
Lumbar dorsal commissural nucleus L1	ipsi	LDComL1	-0.5
Intermediate zone L1	ipsi	izVHL1	-0.5
Intermediolateral cell column L2	ipsi	IMLL2	-0.5
Lumbar dorsal commissural nucleus L2	ipsi	LDComL2	-0.5
Intermediate zone L2	ipsi	izVHL2	-0.5
Intermediolateral cell column L3	ipsi	IMLL3	-0.5
Intermediate zone L3	ipsi	izVHL3	-0.5
Intermediolateral cell column L4	ipsi	IMLL4	-0.5
Intermediate zone L4	ipsi	izVHL4	-0.5
Intermediolateral cell column L5	ipsi	IMLL5	-0.5
Intermediate zone L5	ipsi	izVHL5	-0.5
Intermediolateral cell column L6	ipsi	IMLL6	-0.5
Intermediate zone L6	ipsi	izVHL6	-0.5
Intermediolateral cell column S1	ipsi	IMLS1	-0.5
Intermediate zone S1	ipsi	izVHS1	-0.5
Intermediolateral cell column S2	ipsi	IMLS2	-0.5
Intermediate zone S2	ipsi	izVHS2	-0.5
Intermediolateral cell column S3	ipsi	IMLS3	-0.5
Intermediate zone S3	ipsi	izVHS3	-0.5
Intermediolateral cell column S4	ipsi	IMLS4	-0.5
Intermediate zone S4	ipsi	izVHS4	-0.5
Intermediolateral cell column Co1	ipsi	IMLCo1	-0.5
Intermediate zone Co1	ipsi	izVHCo1	-0.5
Intermediolateral cell column Co2	ipsi	IMLCo2	-0.5
Intermediate zone Co2	ipsi	izVHCo2	-0.5
Intermediolateral cell column Co3	ipsi	IMLCo3	-0.5
Intermediate zone Co3	ipsi	izVHCo3	-0.5
Periaqueductal gray	contra	PAG	0
Dorsal periaqueductal gray caudal part	contra	DPAGC	0
Dorsolateral periaqueductal gray caudal part	contra	PAGdlc	0
Dorsolateral periaqueductal gray rostral part	contra	PAGdlr	0.5
Ventrolateral periaqueductal gray caudal part	contra	PAGvlc	0.5
Ventrolateral periaqueductal gray rostral part	contra	PAGvlr	0
Superior colliculus	contra	SC	3
Superior colliculus intermediate layers	contra	SCi	2
Lateral cerebellar nucleus	contra	CERL	-0.5
Nucleus incertus pars dissipata	contra	NId	0.5
Subparafascicular thalamic nucleus magnocellular part	contra	SPFm	1
Subparafascicular thalamic nucleus parvicellular part	contra	SPFp	1
Nucleus of the optic tract	contra	OT	-0.5
Pretectal region	contra	PRT	-0.5

Key for weights

Value	Weight
-3	unknown
-2	fibers of passage
-1	not clear
-0.5	exists
0	not present
0.5	very light
1	light / sparse
1.5	light / moderate
2	moderate / dense
2.5	moderate / strong
3	strong
4	very strong