University of Rostock

Department of Anatomy

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Rat connectome



Substantia nigra compact part dorsal tier medial division right


Abbreviation
SNCDm
Color       
Superior regionsSubstantia nigra compact part dorsal tier

SynonymsAbbr.Language
Substantia nigra compact part dorsal tier medial divisionSNCDm 
Dorsal tier substantia nigra pars compacta(m)  

Output to

NameSideAbbr.WeightDetails
Substantia nigra compact part dorsal tieripsiSNCD-0.5
Substantia nigra compact part ventral tieripsiSNCV-0.5
Substantia nigra reticular part dorsal tieripsiSNRD-0.5
Nucleus subincertusipsiNSI-0.5
Reticular thalamic nucleus medial part ventral partipsiRtmv-0.5
Zona incerta rostral partipsiZIR-0.5
Caudal globus pallidusipsiGPc-0.5
Medial globus pallidus lateral partipsiMGPl-0.5
Medial globus pallidus medial partipsiMGPm-0.5
Central striatum matrix compartmentipsiCPucMat-0.5
Orofacial sensorimotor district of the striatumipsiCPuOFS1
Rostral striatum matrix compartmentipsiCPurMat-0.5
Striatal patch compartmentipsiSPC-0.5
Ventral striatumipsiCPuv-0.5

Input from

NameSideAbbr.WeightDetails
Tuberomammillary nucleus dorsomedial partcontraTBMdm1
Tuberomammillary nucleus ventrolateral partcontraTBMvl3
Tuberomammillary nucleus dorsomedial partipsiTBMdm2
Tuberomammillary nucleus ventrolateral partipsiTBMvl3

Key for weights

ValueWeight
-3 unknown
-2 fibers of passage
-1 not clear
-0.5 exists
0 not present
0.5 very light
1 light / sparse
1.5 light / moderate
2 moderate / dense
2.5 moderate / strong
3 strong
4 very strong





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