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Rat connectome



Anterodorsal thalamic nucleus left


Abbreviation
AD
Color       
Superior regionsAnterior group of the dorsal thalamus

SynonymsAbbr.Language
 ATN 
Anterodorsal nucleus thalamusADEng
Anterodorsal thalamic nucleusADEng

SubregionsSide
Anterodorsal thalamic nucleus caudal partleft
Anterodorsal thalamic nucleus dorsal partleft
Anterodorsal thalamic nucleus dorsolateral partleft
Anterodorsal thalamic nucleus dorsomedial partleft
Anterodorsal thalamic nucleus medial partleft
Anterodorsal thalamic nucleus middle partleft
Anterodorsal thalamic nucleus rostral partleft
Anterodorsal thalamic nucleus rostrodorsal tipleft
Anterodorsal thalamic nucleus rostroventral tipleft
Anterodorsal thalamic nucleus ventral partleft
Anterodorsal thalamic nucleus posterior partleft

Output to

NameSideAbbr.WeightDetails
Paralemniscal nucleusipsiPL0
Ventral tegmental area A10ipsiVTA-0.5
Juxtaparaventricular part caudal [Lateral hypothalamic area [Preoptic anterior region]]ipsiJPVC0
Juxtaparaventricular part rostral [Lateral hypothalamic area [Preoptic anterior region]]ipsiJPVR0
Lateral zoneipsiLHA-3
Lateral hypothalamic areaipsiLH0
Lateral hypothalamic area juxtadorsomedial regionipsiJDM0
Posterior hypothalamic nucleusipsiPH0
Supramammillar nucleusipsiSuM-0.5
Dorsal thalamusipsiDOR-0.5
Anterior group of the dorsal thalamusipsiATN-0.5
Anteroventral thalamic nucleusipsiAV-0.5
Dorsal part of posterior subdivision of anteroventral thalamic nucleusipsiAVPD2
Laterodorsal thalamic nucleusipsiLD-0.5
Reticular thalamic nucleusipsiRt2
Reticular thalamic nucleus caudal partipsiRtc-10
Reticular thalamic nucleus rostral partipsiRtr3
Dorsal part of reticular thalamic nucleus rostral partipsiRtrD2
Medial forebrain bundle at the level of the anterior commissureipsimfbac-2
Medial forebrain bundle at the level of the lateral preoptic areraipsimfbLpa0
Medial forebrain bundle at the level of the anterior hypothalamic nucleusipsimfbahn0
Medial forebrain bundle at the level of the lateral hypothalamusipsimfbLH-2
Medial forebrain bundle at the level of the posterior hypothalamic nucleusipsimfbPH0
Dorsal bank of the anterior portion of the rhinal fissureipsidarf0
Bed nucleus of the stria terminalisipsiBST-0.5
Accumbens nucleus anteromedial partipsiAcAM1
Caudate putamenipsiCPu-0.5
Cerebral cortexipsiCEC-0.5
HippocampusipsiHIPP-0.5
Dorsal hippocampusipsiHIPPd3
Field CA1 of hippocampusipsiCA13
Field CA3 of hippocampusipsiCA3-0.5
SubiculumipsiS3
Subiculum distal partipsiSdi-0.5
Subiculum dorsal distal partipsiSdd3
Caudal part of the dorsal distal subiculumipsiSddC-0.5
Subiculum septal partipsiSse0.5
Subiculum ventral partipsiSv-0.5
PresubiculumipsiPrS3
Presubiculum layer 1ipsiPrSL1-1
Presubiculum layer 3ipsiPrSL3-1
ParasubiculumipsiPaS2
Parasubiculum layer 4ipsiPaSL4-0.5
Parasubiculum layer 5ipsiPaSL5-0.5
Parasubiculum layer 6ipsiPaSL6-0.5
PostsubiculumipsiPost3
Postsubiculum layersipsiPostL-0.5
Entorhinal cortexipsiEnt2
Lateral entorhinal cortexipsiLEnt2
Medial entorhinal cortex dorsal partipsiMEntD2
Medial entorhinal cortex layer 3ipsiMEntLyL31
Medial entorhinal cortex caudal partipsiMEntCa-0.5
Retrosplenial regionsipsiRS3
Retrosplenial dorsalipsiRSd2
Retrosplenial ventral partipsiRSPv3
Retrosplenial ventral aipsiRSv-a3
Retrosplenial area ventral part zone b/cipsiRSPv-bc3
Retrosplenial cortex middle part layer 1ipsiRSmiL1-0.5
Retrosplenial cortex middle part layer 2ipsiRSmiL2-0.5
Retrosplenial cortex middle part layer 3ipsiRSmiL3-0.5
Retrosplenial cortex middle part layer 4ipsiRSmiL4-0.5
Retrosplenial cortex middle part layer 5ipsiRSmiL5-0.5
Retrosplenial cortex middle part layer 6ipsiRSmiL6-0.5
Retrosplenial dysgranular cortex layer 1ipsiRSdysL10.5
Retrosplenial dysgranular cortex layer 3ipsiRSdysL30.5
Retrosplenial dysgranular cortex layer 4ipsiRSdysL40.5
Midrostrocaudal part of the retrosplenial dysgranular cortexipsiRSdysmrc1
Lateral part of the retrosplenial dysgranular cortexipsiRSdysLa3
Retrosplenial granular cortexipsiRSGra-0.5
Retrosplenial granular cortex subdivisionsipsiRSGsu3
Retrosplenial granular cortex a regionipsiRSGa3
Retrosplenial granular a cortex layer 1ipsiRSGa1-0.5
Retrosplenial granular a cortex layer 3ipsiRSGa3-0.5
Retrosplenial granular a cortex layer 4ipsiRSGa4-0.5
Retrosplenial granular a cortex ventral partipsiRSGaV-0.5
Retrosplenial granular cortex b regionipsiRSGb3
Retrosplenial granular b cortex layer 4ipsiRSGb41
Retrosplenial granular b cortex layer 1ipsiRSGb11
Retrosplenial granular b cortex layer 2ipsiRSGb21
Area 29ipsiA29-0.5
Retrosplenial granular cortex c regionipsiRSGc2
Deep layers of retrosplenial granular cortexipsiDRSG2
Retrosplenial granular cortex layer 1ipsiRSGL12
Retrosplenial granular cortex layer 1aipsiRSGL1a-1
Retrosplenial granular cortex layer 2ipsiRSGL22
Retrosplenial granular cortex layer 3ipsiRSGL32
Cingulate cortexipsiCg3
Anterior cingulate cortexipsiACC3
Anterior cingulate cortex anterior partipsiACCa0.5
Anterior cingulate cortex caudal part layer 1ipsiACCcL1-0.5
Anterior cingulate cortex layer 5ipsiACCL50
Anterior cingulate cortex posterior partipsiACCp2
Dorsal anterior cingulate cortexipsiDACC1
Ventral anterior cingulate cortexipsiVACC0
Ventral anterior cingulate cortex layer 3ipsiVACCL33
Middle cingulate cortexipsiMCC-0.5
Posterior cingulate cortexipsiPCC-0.5
Posterior cingulate cortex anterior partipsiPCCa2.5
Posterior cingulate cortex posterior partipsiPCCp1.5
Prelimbic cortexipsiPrL3
Prelimbic cortex ventral part layer 3ipsiPrLvL33
Infralimbic areaipsiiLA0
Infralimbic cortexipsiIL-3
Frontal association cortexipsiFrA-0.5
Most ventral part of the pregenual part of the anteromedial cortexipsiFr2mvpg0
Frontal cortex area 2 ventral part layer 3ipsiFr2vL32
Parietal association cortexipsiPtA0
Ventral temporal association cortexipsiTev-1
Frontal polar cortexipsiFP2
Agranular insular cortex dorsal part layer 3ipsiAIDL3-0.5
Perirhinal cortexipsiA352
Ectorhinal cortexipsiA362
Prefrontal cortex supragenual partipsisgPFC0
Dorsal part of the pregenual sector of the prefrontal cortexipsidpgPFC0
Somatomotoric regionsipsiSMR1
Lateral agranular prefrontal cortexipsiAGl2
Elbow flexion motor cortexipsiEFMCx0
Ankle dorsiflexion motor cortexipsiADFMCx1
Ankle plantar flexion motor cortexipsiAPFMCx1
Hip flexion motor cortexipsiHFMCx1
Medial prefrontal cortexipsimPFC0
Medial prefrontal cortex layer 5ipsimPFCL50
Medial prefrontal cortex layer 3ipsimPFCL30
Medial prefrontal cortex layer 4ipsimPFCL40
Medial prefrontal cortex posterior partipsimPFCp0
Primary somatosensory cortexipsiS10
Visual regionsipsiVR-0.5
Secondary visual cortexipsiV23
Secondary visual cortex medial areaipsiV2M-1
Medial extrastriate cortexipsiVISM0
Lateral orbital cortexipsiLO3
Medial orbital cortex layer 3ipsiMOcxL32
Ventral orbital cortexipsiVO3
Ventrolateral orbital area layer 3ipsiVLOL3-0.5
Lateral septal nucleusipsiLS-0.5
Lateral septal nucleus rostral partipsiLSr2
Anterior group of the dorsal thalamuscontraATN3
Dorsal hippocampuscontraHIPPd2
Field CA1 of hippocampuscontraCA11
Subiculum ventral partcontraSv-0.5
Retrosplenial regionscontraRS-0.5
Retrosplenial cortex anterior part layer 1 superficial partcontraRSanL1s1
Retrosplenial cortex anterior part layer 2 superficial partcontraRSanL2s1
Retrosplenial cortex anterior part layer 3 superficial partcontraRSanL3s2
Retrosplenial cortex posterior part layer 1 superficial partcontraRSpoL1s1
Retrosplenial cortex posterior part layer 2 superficial partcontraRSpoL2s1
Retrosplenial cortex posterior part layer 3 superficial partcontraRSpoL3s2

Input from

NameSideAbbr.WeightDetails
Central gray pons partipsiCGP-0.5
Ventral periaqueductal grayipsiVPAG-0.5
Periventricular gray matteripsiPVG1
Ventral tegmental area A10ipsiVTA-0.5
Ventral tegmental area A10 lateral nucleiipsiVTALN1
Ventral tegmental area A10 medial nucleiipsiVTAmn0
Ventral tegmental area posterior partipsiVTAP1
Laterodorsal tegmental nucleusipsiLDTg3
Ventral tegmental nucleusipsiVTg-0.5
Dorsal tegmental nucleusipsiDTg3
Dorsal tegmental nucleus dorsal partipsiDTgD0
Dorsal tegmental nucleus lateral partipsiDLTN2
Ventromedial part of the ventral aprt of the dorsal tegmental nucleusipsiDTgVVM0
Pedunculopontine tegmental nucleusipsiPPTg2
Pedunculopontine tegmental nucleus pars compactaipsiPPNC3
Locus coeruleusipsiLC1
Reticulotegmental nucleus of the ponsipsiRtTg1
Gigantocellular reticular nucleusipsiGi0
Anterior part of spinal trigeminal nucleus oral partipsiSp5OA2
Raphe nucleiipsiRAN-0.5
Dorsal raphe nucleusipsiDR2
Median raphe nucleusipsiMnR1
Pontine raphe nucleusipsiPnR0
Raphe magnus nucleusipsiRMg0
HypothalamusipsiHYPO-0.5
Juxtaparaventricular part caudal [Lateral hypothalamic area [Preoptic anterior region]]ipsiJPVC0.5
Juxtaparaventricular part rostral [Lateral hypothalamic area [Preoptic anterior region]]ipsiJPVR0
Lateral hypothalamic areaipsiLH1
Lateral hypothalamic area juxtadorsomedial regionipsiJDM0
Lateral hypothalamic area perifornical partipsiPFx1
Dorsomedial hypothalamic nucleus [Medial zone]ipsiDM1
Dorsomedial hypothalamic nucleus dorsomedial partipsiDMDM1
Posterior hypothalamic areaipsiPHA1
Midlateral posterior hypothalamic areaipsiPHAmL-0.5
Posterior hypothalamic nucleus caudal partipsiPHCa0
Posterior hypothalamic nucleus rostral partipsiPHRo0
Mammillary bodyipsiCMAM3
Lateral mammillary nucleusipsiLM3
Medial mammillary nucleusipsiMMn0
Medial mammillary nucleus lateral partipsiML2
Medial mammillary nucleus medial partipsiMM3
Medial mammillary nucleus median partipsiMMnm3
Medial mammillary nucleus posterior partipsiMMNp3
Posterior mammillay nucleusipsiPMAM2
Premammillary nucleus dorsal partipsiPMD1
Supramammillar nucleusipsiSuM1
Supramammillar nucleus lateral part lateral subpartipsiSuMLL0
Supramammillar nucleus lateral part medial subpartipsiSuMLM1
Supramammillar nucleus medial partipsiSuMM1
ThalamusipsiT-0.5
Anteroventral thalamic nucleusipsiAV-0.5
Reticular thalamic nucleusipsiRt2
Reticular thalamic nucleus anterodorsal partipsiRtAD2
Reticular thalamic nucleus dorsal partipsiRtD2
Reticular thalamic nucleus medial partipsiRtm1
Reticular thalamic nucleus rostral medial partipsiRtrm2
Reticular thalamic nucleus rostral partipsiRtr2
Dorsal part of reticular thalamic nucleus rostral partipsiRtrD3
Dorsolateral part of reticular thalamic nucleus rostral partipsiRtrDL1
Dorsomedial part of reticular thalamic nucleus rostral partipsiRtrDM1.5
Reticular thalamic nucleus rostrocaudal partipsiRtrc3
Reticular thalamic nucleus rostroventral partipsiRtrv2
Subparafascicular thalamic nucleusipsiSPF2
Subparafascicular thalamic nucleus rostral partipsiSPFr0
Medial pretectal nucleusipsiMPT2
RetinaipsiRET1
Central part of ventronasal crescent of retinaipsiCVNcRET2
Bed nucleus of the stria terminalis anterior division dorsomedial nucleusipsiBSTdm1
Bed nucleus of the stria terminalis posterior divisionipsiBSTP1
HippocampusipsiHIPP-0.5
Indusium griseum anterior hippocampal continuationipsiAHCCig-0.5
Deep half of the deep pyramidal zone of the indusium griseum anterior hippocampal continuationipsiAHCCigdhdp-0.5
Hilus of the dentate gyrusipsiHil0
Field CA1 of hippocampusipsiCA10
Field CA1 of hippocampus adjacent to the dorsal subiculumipsiCA1ads-0.5
Field CA2 of hippocampusipsiCA20
Field CA3 of hippocampusipsiCA30
Intermediate subiculumipsiInSu2
Subiculum distal partipsiSdi1
Subiculum dorsal partipsiSd3
Subiculum dorsal distal partipsiSdd3
Subiculum dorsal halfipsiSdh3
Subiculum dorsal part stratum radiatum deeper partipsiSdLrde2
Subiculum ventral partipsiSv2
Subiculum ventral halfipsiSvh0.5
Subiculum ventral part stratum radiatumipsiSvSR2
Parahippocampal regionipsiPHR-0.5
PresubiculumipsiPrS2
Lamina principalis externa of the presubiculumipsiPrSLpe1
Lamina principalis interna of the presubiculumipsiPrSLpi3
Dorsal one half of the lamina principalis interna of the presubiculumipsiPrSdhLpi0.5
Presubiculum layer 2ipsiPrSL2-0.5
Presubiculum layer 3ipsiPrSL3-0.5
Presubiculum deep layersipsiPrSDL3
Presubiculum mid-septotemporal partipsiPrSmst1
ParasubiculumipsiPaS3
Parasubiculum layer 5ipsiPaSL52
Parasubiculum layer 6ipsiPaSL62
Ventral parasubiculumipsiPaSV1
PostsubiculumipsiPost3
Postsubiculum layer 4ipsiPostL41
Postsubiculum deep layersipsiPostLd-0.5
Postsubiculum layer 6ipsiPostL63
Postsubiculum boder of layer 3a and 4ipsiPostL3a4-0.5
Entorhinal cortexipsiEnt0
Entorhinal cortex layer 4ipsiEntL4-2
Lateral entorhinal cortex layer 2ipsiLEntL21
Lateral entorhinal cortex layer 3ipsiLEntL31
Medial entorhinal cortex layer 2ipsiMEntLyL21
Medial entorhinal cortex layer 3ipsiMEntLyL31
Retrosplenial regionsipsiRS2
Retrosplenial ventral aipsiRSv-a1
Retrosplenial cortexipsiRSCx2
Retrosplenial dysgranular cortexipsiRSdys1
Retrosplenial granular cortex subdivisionsipsiRSGsu2
Retrosplenial granular a cortex layer 5ipsiRSGa52
Retrosplenial granular a cortex layer 6ipsiRSGa62
Retrosplenial granular b cortex layer 5ipsiRSGb52
Retrosplenial granular b cortex layer 6ipsiRSGb62
Retrosplenial granular cortex b region rostrocaudal middle layersipsiRSGbrcmL2
Area 29aipsiA29a1
Area 29a layer 6 deep partipsiA29aL6d1
Area 29b layer 6 deep partipsiA29bL6d1
Area 29d caudal part layer 6 deep partipsiA29dCL6d1
Retrosplenial granular cortex c regionipsiRSGc1
Retrosplenial granular cortex caudal part layer 6 deep partipsiRSGc6d1
Retrosplenial granular cortex caudal part caudal partipsiRSGcc1
Retrosplenial granular cortex layer 5ipsiRSGL53
Retrosplenial granular cortex layer 6ipsiRSGL63
Retrosplenial granular cortex rostral partipsiRSGr2.5
Cerebral cortex layer 1ipsiCCL10
Cingulate cortexipsiCg-0.5
Anterior cingulate cortexipsiACC2
Anterior cingulate cortex layer 6ipsiACCL61
Dorsal anterior cingulate cortexipsiDACC2
Ventral anterior cingulate cortexipsiVACC1
Cingulate cortex layer 6ipsiCgL6-0.5
Posterior cingulate cortexipsiPCC3
Prelimbic cortexipsiPrL0
Infralimbic areaipsiiLA0
Infralimbic cortexipsiIL-3
Frontal cortex area 2ipsiFr22.5
Motoric regionsipsiM2
Medial agranular prefrontal cortexipsiAGm0
Medial agranular prefrontal cortex layer 6ipsiAGmL61
Secondary visual cortex medial areaipsiV2M0
Septal regionipsiSER-0.5
Lateral septal nucleus ventral partipsiLSV3
Caudoventral septal regionipsiCVSER-2
Gray matter of the floor of the 4th ventricleipsiGMF4V0
Central gray pons partcontraCGP-0.5
Ventral periaqueductal graycontraVPAG-0.5
Ventral tegmental area A10 lateral nucleicontraVTALN1
Ventral tegmental area posterior partcontraVTAP1
Laterodorsal tegmental nucleuscontraLDTg0.5
Dorsal tegmental nucleuscontraDTg1
Dorsal tegmental nucleus lateral partcontraDLTN2
Pedunculopontine tegmental nucleuscontraPPTg2
Pedunculopontine tegmental nucleus pars compactacontraPPNC0.5
Reticulotegmental nucleus of the ponscontraRtTg0.5
Dorsal raphe nucleuscontraDR2
Mammillary bodycontraCMAM3
Lateral mammillary nucleuscontraLM3
Medial mammillary nucleuscontraMMn3
Medial mammillary nucleus lateral partcontraML2
Ventral part of reticular thalamic nucleus rostral partcontraRtrVe1
RetinacontraRET1
Subiculum dorsal partcontraSd3
Subiculum ventral partcontraSv2
PresubiculumcontraPrS1
Parasubiculum layer 6contraPaSL6-0.5
PostsubiculumcontraPost-0.5
Retrosplenial regionscontraRS-0.5
Retrosplenial granular a cortex middle part layer 2contraRSGaMiL21
Retrosplenial granular a cortex middle part layer 3contraRSGaMiL31
Retrosplenial granular a cortex middle part layer 4contraRSGaMiL41
Retrosplenial granular a cortex middle part layer 5contraRSGaMiL51
Retrosplenial granular a cortex middle part layer 6contraRSGaMiL61
Area 29a layer 6 deep partcontraA29aL6d0.5
Area 29b layer 6 deep partcontraA29bL6d0.5
Area 29d caudal part layer 6 deep partcontraA29dCL6d0.5
Retrosplenial granular cortex caudal part layer 6 deep partcontraRSGc6d0.5
Retrosplenial granular cortex caudal part caudal partcontraRSGcc1
Retrosplenial granular cortex layer 5contraRSGL51
Retrosplenial granular cortex layer 6contraRSGL61
Anterior cingulate cortex layer 6contraACCL60.5
Dorsal anterior cingulate cortexcontraDACC1
Medial agranular prefrontal cortex layer 6contraAGmL60.5

Key for weights

ValueWeight
-3 unknown
-2 fibers of passage
-1 not clear
-0.5 exists
0 not present
0.5 very light
1 light / sparse
1.5 light / moderate
2 moderate / dense
2.5 moderate / strong
3 strong
4 very strong





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