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Rat connectome



Olfactory tubercle left


Abbreviation
TuO
Color       
Superior regionsOlfactory system

SynonymsAbbr.Language
 Tu 
Olfactoric tubercle  
Olfactory tubercleOTuEng
Olfactory tubercleOTEng
Olfactory tubercleTuOEng
Basal cortex Eng
Tuberculum olfactoriumTOEng
 OTEng

SubregionsSide
Olfactory tubercle anterior partleft
Olfactory tubercle caudal partleft
Olfactory tubercle caudomedial partleft
Olfactory tubercle lateral partleft
Olfactory tubercle layersleft
Olfactory tubercle medial partleft
Olfactory tubercle rostral partleft
Olfactory tubercle ventromedial partleft
Rostrolateral part of the olfactory tubercleleft
Pallidal segment of the olfactory tubercleleft
Olfactory tubercle ventral partleft
Olfactory tubercle posteromedial partleft
Olfactory tubercle middle partleft
Olfactory tubercle anterolateral partleft
Olfactory tubercle dorsolateral partleft
Central part of the olfactory tubercleleft
Olfactory tubercle rostromedial partleft

Output to

NameSideAbbr.WeightDetails
Periaqueductal grayipsiPAG1
Red nucleusipsiR0
Central nucleus of the inferior colliculusipsiCIC1
Superior colliculusipsiSC1
Substantia nigra A9ipsiSN0
Ventral tegmental area A10ipsiVTA2
Interfascicular nucleusipsiIF0
Ventral tegmental area A10 middle thirdipsiVTAmit-0.5
Caudal linear nucleus of the rapheipsiCLi0
Pontine grayipsiPG3
Reticulotegmental nucleusipsiRETn2
Prepositus nucleusipsiPr3
Mesencephalic reticular formationipsiMRF1
Peribrachial regionipsiPBR1
Medial vestibular nucleusipsiMVe3
Median raphe nucleusipsiMnR-0.5
Inferior oliveipsiIO2
Olivary pretectal nucleusipsiOPT-1
Rostral ventral respiratory groupipsiRVRG2
Basal forebrainipsiBAF-0.5
Endopiriform systemipsiEnN3
Diagonal band of BrocaipsiDBB1
Nucleus of the horizontal limb of the diagonal bandipsiHDB3
Nucleus of the vertical limb of the diagonal bandipsiVDB1
Substantia innominataipsiSI3
Substantia innominata anterior partipsiSIA1
Substantia innominata posterior partipsiSIP3
Lateral preoptic areaipsiLPO1
Lateral preoptic nucleusipsiLPN1
Magnocellular preoptic nucleusipsiMCPO3
Posterior region [Lateral division of the hypothalamus]ipsiPReg2
Juxtaparaventricular part caudal [Lateral hypothalamic area [Preoptic anterior region]]ipsiJPVC0
Juxtaparaventricular part rostral [Lateral hypothalamic area [Preoptic anterior region]]ipsiJPVR0
Lateral zoneipsiLHA-0.5
Lateral hypothalamic areaipsiLH2
Lateral hypothalamic area juxtadorsomedial regionipsiJDM0
Lateral hypothalamic area medial partipsiLHAm0
Lateral hypothalamic area motor related juxtaventromedial region dorsal zoneipsiLHAjvd0
Lateral hypothalamic area motor related juxtaventromedial region ventral zoneipsiLHAjvv0.5
Lateral hypothalamic nucleusipsiLHN2
Medial basal hypothalamusipsiMBH-0.5
Suprachiasmatic nucleusipsiSCh1
Supraoptic nucleus [Supraoptic region]ipsiSO2
A8 dopamine cells retrorubral groupipsiRRF1
Dorsal part of the lateral geniculate complexipsiLGd1
Ventral part of the lateral geniculate complexipsiLGv1
Central medial thalamic nucleusipsiCM2
Medial group of the dorsal thalamusipsiMED1
Mediodorsal thalamic nucleusipsiMD2.5
Mediodorsal thalamic nucleus central partipsiMDC2
Mediodorsal thalamic nucleus dorsomedial partipsiMDdm2
Mediodorsal thalamic nucleus medial partipsiMDM2
Mediodorsal thalamic nucleus ventral partipsiMDTV-0.5
Submedius thalamic nucleusipsiSub2
Paraventricular thalamic nucleusipsiPV1
Lateral posterior thalamic nucleusipsiLP2
Laterodorsal thalamic nucleusipsiLD3
Reticular thalamic nucleus caudal partipsiRtc-10
Reticular thalamic nucleus intermediate partipsiRti-10
Zona incertaipsiZI2
Nucleus of the fields of ForelipsiF-1
HabenulaipsiHAB1
Lateral habenular nucleus rostral partipsiLHbro2.5
Medial forebrain bundleipsimfb-0.5
Stria medullaris of the thalamusipsism2.5
Medial terminal nucleus of the accessory optic tractipsiMT-1
Amygdaloid complexipsiAC1
Basolateral amygdaloid nucleusipsiBL0.5
Bed nucleus of the stria terminalis caudal part caudoventral regionipsiBSTCacv1
Bed nucleus of the stria terminalis caudal part perifornical regionipsiBSTCapf1
Bed nucleus of the stria terminalis lateral divisionipsiBSTL1
Bed nucleus of the stria terminalis medial divisionipsiBSTM1
Central amygdaloid nucleusipsiCe-0.5
Interstitial nucleus of the posterior limb of the anterior commissure medial partipsiIPACM2
Anterior cortical amygdaloid nucleusipsiACo-0.5
Nucleus of the lateral olfactory tractipsiLOT3
Medial amygdaloid nucleusipsiMe1.5
Medial globus pallidusipsiMGP0
Peripallidal regionipsiPePa0
Subpallidal regionipsiSuPa3
Ventral pallidumipsiVP3
Ventral pallidum lateral partipsiVPlp2
Ventral pallidum ventrolateral partipsiVPvl2
Ventral pallidum ventromedial partipsiVPvm2
Accumbens nucleusipsiAc0
Accumbens nucleus posterolateral partipsiAcbpl2
Lateral nucleus accumbensipsiAcl1
Subthalamic nucleusipsiSTh0
HippocampusipsiHIPP1
Lateral entorhinal cortexipsiLEnt2
Medial entorhinal cortexipsiMEnt1.5
Piriform cortexipsiPir3
Anterior piriform cortexipsiAPIRC-0.5
Posterior piriform cortexipsiPPIRC-0.5
Anterior cingulate cortexipsiACC-1
Cingulate cortex area 3ipsiCg3-0.5
Dorsal cingulate cortexipsiDCC0
Prelimbic cortexipsiPrL0
Infralimbic cortexipsiIL-0.5
Infralimbic cortex rostral partipsiILR1
Parietal association cortexipsiPtA0.5
Agranular insular cortexipsiAI-0.5
Agranular insular cortex dorsal part superficial layersipsiAIDsL0.5
Agranular insular cortex posterior partipsiAIP-0.5
Perirhinal cortexipsiA352
Ectorhinal cortexipsiA361.5
Postrhinal cortexipsiPOR0.5
Prefrontal cortexipsiPFC1
Lateral agranular prefrontal cortexipsiAGl1
Medial prefrontal cortexipsimPFC1
Medial agranular prefrontal cortexipsiAGm1
Lateral orbital cortexipsiLO1
Medial orbital cortexipsiMO-0.5
Ventral orbital cortexipsiVO1
Olfactory bulb A16ipsiMOB2
Lateral olfactory bulbipsiMOBL-0.5
Olfactory cortexipsiOcx-0.5
Tufted cells of the glomerular layer of the olfactory bulbipsiOBgloTC3
Granular cell layer of the olfactory bulbipsiOBgra2
Anterior olfactory nucleus layer 1ipsiAONL1-0.5
Ventral posterior of the olfactory bulb A16ipsiMOBVP3
Olfactory tubercleipsiTuO0
Septal regionipsiSER0
Ventral tegmental area A10 middle thirdcontraVTAmit-0.5
Lateral reticular nucleuscontraLRt0
Lateral aspect of the caudal pole of the lateral reticular nucleuscontraLCpLRt0
Lateral reticular nucleus rostral partcontraLRtr0
Dorsomedial part of the middle third of the lateral reticular nucleuscontraDMMTLRt0
Spinal trigeminal nucleus ventral partcontraSp5ncV0
Rostral ventral respiratory groupcontraRVRG0.5
Central medial thalamic nucleuscontraCM1
Medial group of the dorsal thalamuscontraMED1
Mediodorsal thalamic nucleus central partcontraMDC1
RetinacontraRET-0.5
Agranular insular cortexcontraAI-0.5
Olfactory bulb A16contraMOB0

Input from

NameSideAbbr.WeightDetails
Central grayipsiCG2
Central gray lateral partipsiCGL1
Parabigeminal nucleusipsiPBG0
Dorsal terminal nucleus of the accessory optic tractipsiDT3
Periaqueductal grayipsiPAG-1
Superior colliculusipsiSC-1
Superior colliculus superficial layersipsiSCs-1
Dopaminergic nuclear complexipsiDoNC-0.5
Substantia nigra A9ipsiSN3
Substantia nigra compact partipsiSNC3
Substantia nigra compact part medial tieripsiSNCM2
Substantia nigra compact part rostral tieripsiSNCr-0.5
Substantia nigra compact part ventral tieripsiSNCV-0.5
Substantia nigra compact part mid-dorsal sectoripsiSNCmid2
Substantia nigra lateral partipsiSNL1
Substantia nigra medial partipsiSNM2
Substantia nigra reticular partipsiSNR1
Ventral tegmental area A10ipsiVTA4
Ventral tegmental area A10 lateral nucleiipsiVTALN3
Ventral tegmental area A10 lateral partipsiVTAL2
Ventral tegmental area A10 medial nucleiipsiVTAmn3
Ventral tegmental area A10 medial partipsiVTAM2
Ventral tegmental area A10 middle partipsiVTAmi2
Ventral tegmental area posterior partipsiVTAP3
Parabrachial pigmented nucleusipsiPBP-0.5
Paranigral nucleusipsiPN1
Lateral dorsal sector of the nucleus paranigralisipsiPNLD2
Retrorubral nucleusipsiRR1
Laterodorsal tegmental nucleusipsiLDTg1
Ventral tegmental nucleusipsiVTg-0.5
Pedunculopontine tegmental nucleusipsiPPTg0
Edinger Westphal nucleusipsiEW1.5
Locus coeruleusipsiLC1
Prepositus nucleusipsiPr0
Reticular systemipsiRF1
Mesencephalic reticular formationipsiMRF2
Pontine reticular nucleusipsiPRN0
Pontine reticular nucleus oral partipsiPnO1
Parabrachial nucleusipsiPB0
Koelliker Fuse nucleusipsiKF0
Lateral parabrachial nucleusipsiLPB1
Parabrachial nucleus medialipsiPBnMe1
Parabrachial nucleus ventral partipsiPBV2
MyelencephalonipsiMYC2
Nucleus of the solitary tractipsiSol-0.5
Raphe nucleiipsiRAN1
Dorsal raphe nucleusipsiDR3
Dorsal raphe nucleus medial partipsiDRNM2
Rostral linear nucleus of the rapheipsiRLi3
Median raphe nucleusipsiMnR2
Superior central raphe nucleusipsiCS1.5
Raphe magnus nucleusipsiRMg0
Ventral lateral medulla oblongataipsiMVL1
A2 noradrenergic cellsipsiA2-0.5
Endopiriform systemipsiEnN-0.5
Caudal endopiriform regionipsiCEn1
Middle endopiriform regionipsiMEn1
Preendopiriform regionipsiPEn1
Rostral endopiriform regionipsiREn1
Nucleus of the horizontal limb of the diagonal bandipsiHDB2.5
Nucleus of the vertical limb of the diagonal bandipsiVDB1
Basal nucleus Meynert anterior partipsiBan2.5
Basal nucleus Meynert intermediate divisonipsiBim1
Basal nucleus Meynert posterior divisionipsiBpd1
Substantia innominataipsiSI-0.5
Medial preoptic areaipsiMPA0
Magnocellular preoptic nucleusipsiMCPO-0.5
Tuberomammillary nucleusipsiTuM3
Tuberomammillary nucleus dorsomedial partipsiTBMdm1
Ventral tuberomammillary nucleusipsiVTM2
Dorsal regionipsiDHR-0.5
Juxtaparaventricular part caudal [Lateral hypothalamic area [Preoptic anterior region]]ipsiJPVC0
Juxtaparaventricular part rostral [Lateral hypothalamic area [Preoptic anterior region]]ipsiJPVR0
Lateral zoneipsiLHA-0.5
Lateral hypothalamic areaipsiLH1
Lateral hypothalamic area juxtadorsomedial regionipsiJDM0
Lateral hypothalamic area motor related juxtaventromedial region dorsal zoneipsiLHAjvd0
Lateral hypothalamic area motor related juxtaventromedial region ventral zoneipsiLHAjvv0
Lateral hypothalamic area perifornical partipsiPFx1
Medial division of the hypothalamusipsiMdH-0.5
Dorsomedial hypothalamic nucleus [Medial zone]ipsiDM1
Dorsomedial hypothalamic nucleus dorsomedial partipsiDMDM1
Posterior hypothalamic areaipsiPHA1
Posterior hypothalamic nucleus caudal partipsiPHCa0
Posterior hypothalamic nucleus rostral partipsiPHRo0
Ventromedial hypothalamic nucleus central partipsiVMHC0
Ventromedial hypothalamic nucleus shellipsiVMS0
Arcuate nucleusipsiArc0.5
Periventricular hypothalamic nucleusipsiPe0
Suprachiasmatic nucleusipsiSCh-0.5
Supramammillar nucleusipsiSuM1
Supramammillar nucleus lateral partipsiSuML2
Supramammillar nucleus lateral part lateral subpartipsiSuMLL0
Supramammillar nucleus lateral part medial subpartipsiSuMLM0
Supramammillar nucleus medial partipsiSuMM0
A8 dopamine cells retrorubral groupipsiRRF2
Retrochiasmatic areaipsiRCh0
Dorsal part of the lateral geniculate complexipsiLGd2
Ventral part of the lateral geniculate complexipsiLGv2
Central medial thalamic nucleusipsiCM3
Central medial thalamic nucleus caudal partipsiCMca2
Central medial thalamic nucleus rostral partipsiCMr2
Centrolateral thalamic nucleusipsiCL0
Paracentral thalamic nucleusipsiPC1
Parafascicular thalamic nucleusipsiPF1
Parafascicular thalamic nucleus lateral partipsiPFL1
Rhomboid thalamic nucleusipsiRh2
Intermediodorsal thalamic nucleusipsiIMD2
Midline group of the dorsal thalamusipsiMTN2
Paratenial thalamic nucleusipsiPT3
Paraventricular thalamic nucleusipsiPV3
Paraventricular thalamic nucleus anterior partipsiPVA2
Paraventricular thalamic nucleus posterior partipsiPVP3
Reuniens thalamic nucleusipsiRe1
Nucleus reuniens rostral division dorsal partipsiRERd1
Reuniens thalamic nucleus dorsocaudal partipsiRedc-0.5
Intralaminar nucleiipsiILN2
Subparafascicular thalamic nucleusipsiSPF2
Subparafascicular thalamic nucleus rostral partipsiSPFr1
Lateral habenular nucleusipsiLHb2
RetinaipsiRET3
Dorsal bank of rhinal fissureipsiDBrf-1
Ventral bank of the rhinal fissureipsiVBrf-1
Lateral terminal nucleus of the accessory optic tractipsiLTeN3
Medial terminal nucleus of the accessory optic tractipsiMT3
Basal nucleusipsiBnc3
Accessory basal nucleusipsiAB2
Accessory basal nucleus magnocellular divisionipsiABm-1
Accessory basal nucleus parvicellular divisionipsiABp1.5
Basal nucleus magnocellular partipsiBmc-1
Basolateral amygdaloid nucleusipsiBL3
Anterior basolateral nucleusipsiBLA3
Basolateral nucleus rostral partipsiBLRP2.5
Posterior basolateral nucleusipsiBLP-0.5
Ventral basolateral nucleusipsiBLV-0.5
Basomedial amygdaloid nucleusipsiBM3
Anterior basomedial nucleusipsiBMA1
Posterior basomedial nucleusipsiBMP1.5
Lateral amygdaloid nucleusipsiLA2
Bed nucleus of the stria terminalis fusiform partipsiFu1
Bed nucleus of the stria terminalis dorsal nucleusipsiBSTd2
Central amygdaloid nucleusipsiCe1
Lateral capsular subdivision of the central nucleus of the amygdalaipsiCeLac1
Cortex amygdala transition zoneipsiCxA2
Amygdalopiriform transition area anterolateral partipsiAPir_AL3
Amygdalopiriform transition area posteromedial partipsiAPir_PM-1
Anterior amygdaloid areaipsiAA-0.5
Cortical amygdaloid nucleusipsiCAn-0.5
Anterior cortical amygdaloid nucleusipsiACo-0.5
Posterior amygdaloid nucleusipsiCOAp3
Posterolateral cortical nucleusipsiPLCo2
Nucleus of the lateral olfactory tractipsiLOT3
Nucleus of the lateral olfactory tract layer 3ipsiLOTL32
Periamygdaloid complexipsiPAC3
Medial amygdaloid nucleusipsiMe2
Medial amygdaloid nucleus anterodorsal partipsiMeAD2
Medial amygdaloid nucleus anteroventral partipsiMeAV1
Medial amygdaloid nucleus posteroventral partipsiMePV2
Amygdalohippocampal areaipsiAHi3
Posteromedial cortical nucleusipsiPMCo-0.5
Intercalated masses rostral partipsiIMRP3
Peripallidal regionipsiPePa0
Subpallidal regionipsiSuPa1
Ventral pallidumipsiVP-0.5
Accumbens nucleusipsiAc0
Rostral coreipsiAcbCr1
Ventral coreipsiAcbCv1
Rostral accumbens shellipsiAcbShr3
Rostral striatumipsiCPur-0.5
Subthalamic nucleusipsiSTh0
Parasubthalamic nucleusipsiPSTh-2
HippocampusipsiHIPP-1
Field CA1 of hippocampusipsiCA1-1
Field CA3 of hippocampusipsiCA32
SubiculumipsiS0
Subiculum ventral partipsiSv0.5
Entorhinal cortexipsiEnt2
Lateral entorhinal cortexipsiLEnt2.5
Medial entorhinal cortexipsiMEnt-0.5
Piriform cortexipsiPir3
Anterior piriform cortexipsiAPIRC3
Anterior piriform cortex ventrolateral partipsiAPIRCvL-0.5
Central piriform cortexipsiCPC3
Posterior piriform cortexipsiPPIRC1.5
Posterior piriform cortex superficial pyramidal cellsipsiPPIRsp-0.5
Prepiriform cortexipsiPRPIR-1
Cerebral cortex layer 4ipsiCCL4-1
Cerebral cortex layer 2ipsiCCL2-1
Cerebral cortex layer 3ipsiCCL3-1
Cerebral cortex layer 5ipsiCCL5-1
Cerebral cortex layer 6ipsiCCL6-1
Cingulate cortex area 1 caudal partipsiCg1c2
Cingulate cortex area 2 caudal partipsiCg2c0
Cingulate cortex area 3 vasoregulatory regionipsiCg3vr-0.5
Posterior cingulate cortexipsiPCC1
Prelimbic cortexipsiPrL3
Prelimbic cortex dorsal partipsiPrLd0
Prelimbic cortex deep layersipsiPrLDL3
Prelimbic cortex ventral partipsiPrLv0.5
Infralimbic cortexipsiIL2
Infralimbic cortex deep layersipsiILDL3
Infralimbic cortex rostral partipsiILR1
Frontal cortex area 2ipsiFr20
Suprarhinal regionipsiSRR-1
Agranular insular cortexipsiAI2
Agranular insular cortex dorsal partipsiAID2
Agranular insular cortex posterior part depressor siteipsiAIPd1
Agranular insular cortex posterior part pressor siteipsiAIPp3
Agranular insular cortex ventral partipsiAIV2
Gustatory dysgranular insular cortexipsiDIg-1
Perirhinal cortexipsiA35-1
Dorsal peduncular cortex deep layersipsiDPdL3
Prefrontal cortexipsiPFC-0.5
Lateral prefrontal cortexipsilPFC-0.5
Medial prefrontal cortexipsimPFC2
Medial agranular prefrontal cortexipsiAGm2
Sensory regionsipsiSR-1
Ventral prefrontal cortexipsiVPFC-0.5
Primary visual cortexipsiV12
Lateral extrastriate cortexipsiVISxL-1
Mediolateral cortical visual areaipsiVISlm-1
Medial extrastriate cortexipsiVISM2
Orbitofrontal cortexipsiOrFCx-1
Lateral orbital cortexipsiLO1
Medial orbital cortexipsiMO3
Ventral orbital cortexipsiVO2
Ventrolateral orbital areaipsiVLO2
Interpeduncular nucleusipsiIP0
Olfactory bulb A16ipsiMOB2
Glomerular layer of the olfactory bulbipsiOBglo-0.5
Tufted cells of the glomerular layer of the olfactory bulbipsiOBgloTC3
Inframitral short axon cells in the granular cell layer of the olfactory bulbipsiOBgraim-0.5
Mitral cell layer of the olfactory bulbipsiMi3
Mitral cells of the olfactory bulbipsiMiC-0.5
Ventral mitral cell layer of the olfactory bulbipsiMiV-0.5
Olfactory cortex caudal partipsiOcxC3
Olfactory cortex lateral part of the deep granule cell layer tufted cellsipsiOcxLdGT-2
Olfactory cortex lateral part superficial part of the external piriform layer tufted cellsipsiOcxLsEPt-2
Anterior olfactory nucleusipsiAON2
Anterior olfactory nucleus medial partipsiAONm3
Ventral posterior of the olfactory bulb A16ipsiMOBVP3
Olfactory tubercleipsiTuO0
Central graycontraCG0.5
Central gray lateral partcontraCGL0.5
Ventral tegmental area A10contraVTA2
Parabrachial nucleus medialcontraPBnMe-0.5
Tuberomammillary nucleuscontraTuM-0.5
Tuberomammillary nucleus dorsomedial partcontraTBMdm1
Ventral tuberomammillary nucleuscontraVTM2
Nucleus of the lateral olfactory tractcontraLOT3
Nucleus of the lateral olfactory tract layer 2contraLOTL2-3
HippocampuscontraHIPP3
Entorhinal cortexcontraEnt2
Piriform cortexcontraPir1
MesocortexcontraMESOCX2
Prelimbic cortexcontraPrL1
Infralimbic cortexcontraIL1
Primary auditory cortexcontraAu11
Lateral agranular prefrontal cortexcontraAGl0
Primary somatosensory cortexcontraS10
Primary visual cortexcontraV10
Anterior olfactory nucleuscontraAON-0.5
Anterior olfactory nucleus external partcontraAONe3
Nasal cavityipsiOrgNaCa3

Key for weights

ValueWeight
-3 unknown
-2 fibers of passage
-1 not clear
-0.5 exists
0 not present
0.5 very light
1 light / sparse
1.5 light / moderate
2 moderate / dense
2.5 moderate / strong
3 strong
4 very strong





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