University of Rostock

Department of Anatomy

Neuroscience Group

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Rat connectome



Dorsal thalamus left


Abbreviation
DOR
Color       
Superior regionsThalamus

SynonymsAbbr.Language
Dorsal thalamic nucleus  
Dorsal nuclei of thalamus Eng
Dorsal thalamusDOREng

SubregionsSide
Anterior group of the dorsal thalamusleft
Caudal level of dorsal thalamusleft
Dorsal thalamus periventricular strataleft
Dorsal thalamus posterolateral partleft
Geniculate group of the dorsal thalamusleft
Intralaminar nuclei of the dorsal thalamusleft
Lateral group of the dorsal thalamusleft
Medial group of the dorsal thalamusleft
Midline group of the dorsal thalamusleft
Subfornical organleft
Ventral group of the dorsal thalamusleft
Ventrolateral dorsal thalamusleft
Venteroposterior complex of the dorsal thalamusleft
Visual dorsal thalamic nucleusleft
Border zone between rostralmost part of the mediodorsal thalamic nucleus and paratenial thalamic nucleusleft

Output to

NameSideAbbr.WeightDetails
Reticular systemipsiRF3
Lateral hypothalamic areaipsiLH-0.5
Supraoptic decussationipsisox-2
Supramammillary commissureipsismaco-2
Interoanterodorsal thalamic nucleusipsiIAD2
Interoanteromedial thalamic nucleusipsiIAM1
Central medial thalamic nucleusipsiCM1
Centrolateral thalamic nucleusipsiCL1
Parafascicular thalamic nucleusipsiPF1
Intermediodorsal thalamic nucleusipsiIMD1
Mediodorsal thalamic nucleus lateral partipsiMDL2
Paraventricular thalamic nucleus rostral partipsiPVr2
Ventrolateral thalamic nucleusipsiVL1
Lateral posterior thalamic nucleusipsiLP1
Laterodorsal thalamic nucleusipsiLD3
Reticular thalamic nucleusipsiRt3
Reticular thalamic nucleus rostral partipsiRtr2
Zona incertaipsiZI0.5
Retinal ganglion cellsipsiRETg3
Internal capsuleipsiic-2
Medial globus pallidusipsiMGP2
Cerebral cortexipsiCEC2
HippocampusipsiHIPP-0.5
Lateral entorhinal cortexipsiLEnt2
Lateral entorhinal cortex lateral partipsiLEntLa0.5
Lateral entorhinal cortex medial partipsiLEntM0.5
Lateral entorhinal cortex intermediate partipsiLEnti0.5
Medial entorhinal cortexipsiMEnt2
Medial entorhinal cortex lateral partipsiMEntL0.5
Medial entorhinal field medial partipsiMEntFm0.5
Intermediate medial entorhinal cortexipsiMEntim0
Retrosplenial regions layer 5ipsiRSL5-0.5
Retrosplenial regions layer 6ipsiRSL6-0.5
Anterior cingulate cortex caudal part layer 5ipsiACCcL5-0.5
Anterior cingulate cortex caudal part layer 6ipsiACCcL6-0.5
Anterior cingulate cortex rostral part layer 5ipsiACCrL5-0.5
Anterior cingulate cortex rostral part layer 6ipsiACCrL6-0.5
Cingulate cortex area 1ipsiCg13
Cingulate cortex area 2ipsiCg23
Caudal cingulate cortexipsiCCg3
Lateral cingulate cortexipsiLCg3
Medial cingulate cortexipsiMCg3
Rostral part of the cingulate cortexipsiRCg3
Parietal association cortexipsiPtA2
Primary auditory cortexipsiAu11.5
Primary somatosensory cortex barrel field layer 3ipsiS1BF3-0.5
Primary somatosensory cortex barrel field layer 4ipsiS1BF4-0.5
Visual regionsipsiVR2
Primary visual cortexipsiV13
Precommissural nucleusipsiPrC1
Ventral lateral geniculate nucleusipsiVLG2
Lumbar enlargementipsiLSegE-0.5
Supraoptic decussationcontrasox-2
Supramammillary commissurecontrasmaco-2
Reticular thalamic nucleuscontraRt-0.5
Reticular thalamic nucleus rostral medial partcontraRtrm0
Retinal ganglion cellscontraRETg3
Intergeniculate leafcontraIGL-0.5
Ventral lateral geniculate nucleuscontraVLG-0.5

Input from

NameSideAbbr.WeightDetails
Peduncularpontine nucleusipsiPPN-0.5
Laterodorsal tegmental nucleusipsiLDTg4
Pedunculopontine tegmental nucleusipsiPPTg4
CerebellumipsiCERE-0.5
Locus coeruleusipsiLC-0.5
Reticular systemipsiRF1
Deep mesencephalic nucleus lateral partipsiDpMeL0
Nucleus of the vertical limb of the diagonal bandipsiVDB2.5
Medial septal nucleusipsiMS2.5
Substantia innominataipsiSI-0.5
Anterodorsal thalamic nucleusipsiAD-0.5
Parafascicular thalamic nucleusipsiPF2
Paratenial thalamic nucleusipsiPT-0.5
Paraventricular thalamic nucleusipsiPV-0.5
Perireticular thalamic nucleusipsiPRTN0
Reticular thalamic nucleusipsiRt-0.5
Reticular thalamic nucleus lateral partipsiRtL2
Reticular thalamic nucleus medial partipsiRtm2
Reticular thalamic nucleus rostral medial partipsiRtrm2
Reticular thalamic nucleus rostral partipsiRtr2
Zona incertaipsiZI3
Medial amygdaloid nucleus posteroventral partipsiMePV1
Lateral globus pallidusipsiLGP0
Lateral entorhinal cortexipsiLEnt1
Medial entorhinal cortexipsiMEnt1
Retrosplenial regions layer 5ipsiRSL5-0.5
Retrosplenial regions layer 6ipsiRSL6-0.5
Retrosplenial agranular cortexipsiRSA-0.5
Area 29aipsiA29a-2
Area 29bipsiA29b-2
Most caudal part of area 29dipsiA29dmC-2
Area 29d rostral partipsiA29dR-2
Retrosplenial granular cortex caudal part caudal partipsiRSGcc-2
Retrosplenial granular cortex caudal part rostral partipsiRSGcr-2
Caudal cingulate cortexipsiCCg3
Rostral part of the cingulate cortexipsiRCg3
Frontal cortex area 3aipsiFr3a1
Parietal cortex posterior areaipsiParP-0.5
Parietal association cortex anterior areaipsiPtAA-0.5
Auditory regionsipsiAU-0.5
Lateral agranular prefrontal cortexipsiAGl1
Rostrolateral part of the lateral agranular prefrontal cortexipsiAGlRL-0.5
Posterior part of the medial agranular prefrontal cortexipsiPoAGm-0.5
Primary somatosensory cortex barrel field layer 6ipsiS1BF60.5
Primary somatosensory cortex layer 5ipsiS1L5-0.5
Primary somatosensory cortex layer 6ipsiS1L6-0.5
Primary somatosensory cortex posterior partipsiS1p-0.5
Central dysgranular zone between E4 whisker and forelimb barrel field layers 5ipsiS1BFcdysL52
Central dysgranular zone between E4 whisker and forelimb barrel field layers 6ipsiS1BFcdysL62
Posterior dygranular zone between whisker and trunk representation layer 5ipsiS1pdyL52
Posterior dygranular zone between whisker and trunk representation layer 6ipsiS1pdyL62
Secondary somatosensory cortex layer 5ipsiS2L5-0.5
Secondary somatosensory cortex layer 6ipsiS2L6-0.5
Visual regionsipsiVR-0.5
Primary visual cortexipsiV1-0.5
Secondary visual cortexipsiV2-0.5
Posterior commissureipsipc-2
Precommissural nucleusipsiPrC-2
Dorsal geniculate nucleus lateral partipsiDLGl2
Lateral spinal nucleus C1ipsiLSpC11
Spinal cord layers C1ipsiSCLC11
Lateral spinal nucleus C2ipsiLSpC21
Spinal cord layers C2ipsiSCLC21
Lateral spinal nucleus C3ipsiLSpC31
Spinal cord layers C3ipsiSCLC31
Lateral spinal nucleus C4ipsiLSpC41
Spinal cord layers C4ipsiSCLC41
Lateral spinal nucleus C5ipsiLSpC51
Spinal cord layers C5ipsiSCLC51
Lateral spinal nucleus C6ipsiLSpC61
Spinal cord layers C6ipsiSCLC61
Lateral spinal nucleus C7ipsiLSpC71
Spinal cord layers C7ipsiSCLC71
Lateral spinal nucleus C8ipsiLSpC81
Spinal cord layers C8ipsiSCLC81
Lateral spinal nucleus T1ipsiLSpT11
Spinal cord layers T1ipsiSCLT11
Lateral spinal nucleus T2ipsiLSpT21
Spinal cord layers T2ipsiSCLT21
Lateral spinal nucleus T3ipsiLSpT31
Spinal cord layers T3ipsiSCLT31
Lateral spinal nucleus T4ipsiLSpT41
Spinal cord layers T4ipsiSCLT41
Lateral spinal nucleus T5ipsiLSpT51
Spinal cord layers T5ipsiSCLT51
Lateral spinal nucleus T6ipsiLSpT61
Spinal cord layers T6ipsiSCLT61
Lateral spinal nucleus T7ipsiLSpT71
Spinal cord layers T7ipsiSCLT71
Lateral spinal nucleus T8ipsiLSpT81
Spinal cord layers T8ipsiSCLT81
Lateral spinal nucleus T9ipsiLSpT91
Spinal cord layers T9ipsiSCLT91
Lateral spinal nucleus T10ipsiLSpT101
Spinal cord layers T10ipsiSCLT101
Lateral spinal nucleus T11ipsiLSpT111
Spinal cord layers T11ipsiSCLT111
Lateral spinal nucleus T12ipsiLSpT121
Spinal cord layers T12ipsiSCLT121
Lateral spinal nucleus T13ipsiLSpT131
Spinal cord layers T13ipsiSCLT131
Lateral spinal nucleus L1ipsiLSpL11
Spinal cord layers L1ipsiSCLL11
Lateral spinal nucleus L2ipsiLSpL21
Spinal cord layers L2ipsiSCLL21
Lateral spinal nucleus L3ipsiLSpL31
Spinal cord layers L3ipsiSCLL31
Lateral spinal nucleus L4ipsiLSpL41
Spinal cord layers L4ipsiSCLL41
Lateral spinal nucleus L5ipsiLSpL51
Spinal cord layers L5ipsiSCLL51
Lateral spinal nucleus L6ipsiLSpL61
Spinal cord layers L6ipsiSCLL61
Lateral spinal nucleus S1ipsiLSpS11
Spinal cord layers S1ipsiSCLS11
Lateral spinal nucleus S2ipsiLSpS21
Spinal cord layers S2ipsiSCLS21
Lateral spinal nucleus S3ipsiLSpS31
Spinal cord layers S3ipsiSCLS31
Lateral spinal nucleus S4ipsiLSpS41
Spinal cord layers S4ipsiSCLS41
Lateral spinal nucleus Co1ipsiLSpCo11
Spinal cord layers Co1ipsiSCLCo11
Lateral spinal nucleus Co2ipsiLSpCo21
Spinal cord layers Co2ipsiSCLCo21
Lateral spinal nucleus Co3ipsiLSpCo31
Spinal cord layers Co3ipsiSCLCo31
Principal sensory trigeminal nucleuscontraPr53
Nucleus of the solitary tractcontraSol3
Cuneate nucleuscontraCu3
GracilecontraGra3
Centrolateral thalamic nucleuscontraCL0
Parafascicular thalamic nucleuscontraPF0
Posterior thalamic nuclear groupcontraPo0
Mediodorsal thalamic nucleuscontraMD0
Lateral posterior thalamic nucleuscontraLP0
Laterodorsal thalamic nucleuscontraLD0
Reticular thalamic nucleus rostral medial partcontraRtrm2
Zona incertacontraZI-0.5
Lateral spinal nucleus C1contraLSpC12
Spinal cord layers C1contraSCLC12
Lateral spinal nucleus C2contraLSpC22
Spinal cord layers C2contraSCLC22
Lateral spinal nucleus C3contraLSpC32
Spinal cord layers C3contraSCLC32
Lateral spinal nucleus C4contraLSpC42
Spinal cord layers C4contraSCLC42
Lateral spinal nucleus C5contraLSpC52
Spinal cord layers C5contraSCLC52
Lateral spinal nucleus C6contraLSpC62
Spinal cord layers C6contraSCLC62
Lateral spinal nucleus C7contraLSpC72
Spinal cord layers C7contraSCLC72
Lateral spinal nucleus C8contraLSpC82
Spinal cord layers C8contraSCLC82
Lateral spinal nucleus T1contraLSpT12
Spinal cord layers T1contraSCLT12
Lateral spinal nucleus T2contraLSpT22
Spinal cord layers T2contraSCLT22
Lateral spinal nucleus T3contraLSpT32
Spinal cord layers T3contraSCLT32
Lateral spinal nucleus T4contraLSpT42
Spinal cord layers T4contraSCLT42
Lateral spinal nucleus T5contraLSpT52
Spinal cord layers T5contraSCLT52
Lateral spinal nucleus T6contraLSpT62
Spinal cord layers T6contraSCLT62
Lateral spinal nucleus T7contraLSpT72
Spinal cord layers T7contraSCLT72
Lateral spinal nucleus T8contraLSpT82
Spinal cord layers T8contraSCLT82
Lateral spinal nucleus T9contraLSpT92
Spinal cord layers T9contraSCLT92
Lateral spinal nucleus T10contraLSpT102
Spinal cord layers T10contraSCLT102
Lateral spinal nucleus T11contraLSpT112
Spinal cord layers T11contraSCLT112
Lateral spinal nucleus T12contraLSpT122
Spinal cord layers T12contraSCLT122
Lateral spinal nucleus T13contraLSpT132
Spinal cord layers T13contraSCLT132
Lateral spinal nucleus L1contraLSpL12
Spinal cord layers L1contraSCLL12
Lateral spinal nucleus L2contraLSpL22
Spinal cord layers L2contraSCLL22
Lateral spinal nucleus L3contraLSpL32
Spinal cord layers L3contraSCLL32
Lateral spinal nucleus L4contraLSpL42
Spinal cord layers L4contraSCLL42
Lateral spinal nucleus L5contraLSpL52
Spinal cord layers L5contraSCLL52
Lateral spinal nucleus L6contraLSpL62
Spinal cord layers L6contraSCLL62
Lateral spinal nucleus S1contraLSpS12
Spinal cord layers S1contraSCLS12
Lateral spinal nucleus S2contraLSpS22
Spinal cord layers S2contraSCLS22
Lateral spinal nucleus S3contraLSpS32
Spinal cord layers S3contraSCLS32
Lateral spinal nucleus S4contraLSpS42
Spinal cord layers S4contraSCLS42
Lateral spinal nucleus Co1contraLSpCo12
Spinal cord layers Co1contraSCLCo12
Lateral spinal nucleus Co2contraLSpCo22
Spinal cord layers Co2contraSCLCo22
Lateral spinal nucleus Co3contraLSpCo32
Spinal cord layers Co3contraSCLCo32

Key for weights

ValueWeight
-3 unknown
-2 fibers of passage
-1 not clear
-0.5 exists
0 not present
0.5 very light
1 light / sparse
1.5 light / moderate
2 moderate / dense
2.5 moderate / strong
3 strong
4 very strong





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