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Rat connectome



Dorsal horn L5 left


Abbreviation
DHL5
Color       
Superior regionsSpinal cord layers L5

SynonymsAbbr.Language
Dorsal horn L5DHL5Eng

SubregionsSide
Deep dorsal horn L5left
Nucleus proprius L5left
Superficial dorsal horn L5left
Reticulated area of the dorsal horn L5left
Lateral dorsal horn L5left
Medial dorsal horn L5left
Reticular part of neck of dorsal horn L5left
Medial part of neck of dorsal horn L5left

Output to

NameSideAbbr.WeightDetails
Central grayipsiCG1
Central gray dorsal partipsiCGD-0.5
Central gray dorsoventral partipsiCGDV-0.5
Central gray mediolateral partipsiCGMeL-0.5
Nuclei of the lateral lemniscusipsiNLL1
Nucleus of DarkschewitschipsiDk-0.5
Area surrounding the oculomotor complexipsiASOCS-0.5
Red nucleusipsiR-1
Prerubral fieldipsiPR-3
Inferior colliculusipsiICOL1
Intercollicular nucleusipsiInCo-0.5
Superior colliculusipsiSC1
Commissure of the superior colliculusipsicsc-2
Superior colliculus intermediate layersipsiSCi-0.5
Superior colliculus deep layersipsiSCd-0.5
Central tegmental field dorsal partipsiTGACd0
Laterodorsal tegmental nucleusipsiLDTg1
Ventral tegmental nucleusipsiVTg1
Dorsal tegmental nucleusipsiDTg0.5
Pedunculopontine tegmental nucleusipsiPPTg1
Locus coeruleusipsiLC1
Locus coeruleus rostral partipsiLCRo-0.5
Mesencephalic reticular formationipsiMRF1
Cuneiforme nucleusipsiCnF0.5
Koelliker Fuse nucleusipsiKF1
Lateral parabrachial nucleusipsiLPB1
Lateral parabrachial nucleus central partipsiLPBC-0.5
Lateral parabrachial nucleus dorsal partipsiLPBD-0.5
Lateral parabrachial nucleus external partipsiLPBE-0.5
Lateral parabrachial nucleus rostral partipsiLPBr-0.5
Parabrachial nucleus dorsal partipsiPBD-0.5
Parabrachial nucleus medialipsiPBnMe0.5
Gigantocellular reticular nucleusipsiGi-0.5
Gigantocellular reticular nucleus alpha partipsiGiA-0.5
Lateral reticular nucleusipsiLRt1
Caudal part to the midportion of the lateral reticular nucleusipsiCaLRtMp0
Caudal third of the caudomedial part of the lateral reticular nucleusipsiLRtcmCt0
Lateral reticular nucleus magnocellular partipsiLRtMC1
Lateral reticular nucleus parvicellular partipsiLRtPC2
Lateral reticular nucleus subtrigeminal partipsiLRtS50
Nucleus of the solitary tractipsiSol1
Caudal ventrolateral medullaipsiCVLM1
Rostral ventrolateral medullaipsiRVLM-0.5
A1 noradrenergic cellsipsiA11
A2 noradrenergic cellsipsiA20.5
Dorsal column nucleiipsiDCN-0.5
Cuneate nucleusipsiCu-0.5
GracileipsiGra-0.5
Gracile nucleus principal partipsiGr2
Paragigantocellular reticular nucleusipsiPGi-0.5
HypothalamusipsiHYPO-0.5
Lateral hypothalamic areaipsiLH-0.5
Posterior hypothalamic areaipsiPHA-0.5
Paraventricular hypothalamic nucleusipsiPa0.5
Anteromedial thalamic nucleusipsiAM-3
Paracentral thalamic nucleusipsiPC-3
Rhomboid thalamic nucleusipsiRh-3
Submedius thalamic nucleusipsiSub2.5
Reuniens thalamic nucleusipsiRe-3
Reuniens thalamic nucleus ventral partipsiReV-3
Ventrolateral thalamic nucleusipsiVL-3
Ventrobasal complexipsiVB-3
Ventral posterolateral thalamic nucleusipsiVPL-0.5
Ventrobasal complex anterior partipsiVBa0.5
Ventromedial thalamic nucleusipsiVM-3
Posterior groupipsiPTG0.5
Ventral medial nucleus of the thalamusipsiVMT-3
Zona incertaipsiZI-0.5
Lateral funiculusipsilf-2
TelencephalonipsiTEL-0.5
Amygdaloid complexipsiAC-0.5
Central amygdaloid nucleusipsiCe0.5
Central amygdaloid nucleus anterior partipsiCeAn-0.5
Basal gangliaipsiBG-0.5
Infralimbic cortexipsiIL-0.5
Medial orbital cortexipsiMO-0.5
Posterior commissureipsipc-2
Medial geniculate nucleus medial partipsiMGM-0.5
Ventrolateral funiculusipsivLF-2
Spinomesencephalic tractipsismT-2
Cervical enlargement dorsal hornipsiCSegEd-0.5
Spinal nucleus of the bulbocavernosus lumbal segment 5ipsiBCL53
Central graycontraCG-0.5
Nuclei of the lateral lemniscuscontraNLL1
Inferior colliculuscontraICOL3
Superior colliculuscontraSC3
Tegmental areacontraTGA-0.5
Central tegmental field dorsal partcontraTGACd0
Laterodorsal tegmental nucleuscontraLDTg1
Ventral tegmental nucleuscontraVTg0.5
Dorsal tegmental nucleuscontraDTg0.5
Pedunculopontine tegmental nucleuscontraPPTg1
Locus coeruleuscontraLC0.5
Mesencephalic reticular formationcontraMRF3
Cuneiforme nucleuscontraCnF-0.5
Koelliker Fuse nucleuscontraKF2
Lateral parabrachial nucleuscontraLPB0.5
Lateral reticular nucleuscontraLRt3
Caudal part to the midportion of the lateral reticular nucleuscontraCaLRtMp-0.5
Caudal third of the caudomedial part of the lateral reticular nucleuscontraLRtcmCt0
Lateral reticular nucleus magnocellular partcontraLRtMC1
Lateral reticular nucleus parvicellular partcontraLRtPC3
Lateral reticular nucleus subtrigeminal partcontraLRtS50
Nucleus of the solitary tractcontraSol3
Caudal ventrolateral medullacontraCVLM1
Rostral ventrolateral medullacontraRVLM-0.5
A1 noradrenergic cellscontraA13
A2 noradrenergic cellscontraA22
GracilecontraGra-0.5
Paragigantocellular reticular nucleuscontraPGi-0.5
HypothalamuscontraHYPO-0.5
ThalamuscontraT3
Lateral group of the dorsal thalamuscontraLAT3
Submedius thalamic nucleuscontraSub3
Ventral posterolateral thalamic nucleuscontraVPL-0.5
Ventrobasal complex anterior partcontraVBa3
Posterior groupcontraPTG1
Central amygdaloid nucleuscontraCe0.5
Thoracal segment 12contraT120.5
Sciatic nerveipsisci-2
ColonipsiOrgsColonS0.5
Lumbar epaxial musclesipsiMuscLep3
Bulbospongiosus muscleipsiMuscbsp-10
ProstateipsiOrgProst-10
TestisipsiOrgTest-0.5
Seminal vesicleipsiOrgRepSV-10
Lumbar epaxial musclescontraMuscLep2

Input from

NameSideAbbr.WeightDetails
Periaqueductal grayipsiPAG0.5
Dorsolateral periaqueductal gray caudal partipsiPAGdlc0
Ventrolateral periaqueductal gray caudal partipsiPAGvlc0
Ventrolateral periaqueductal gray rostral partipsiPAGvlr0
Red nucleusipsiR3
Red nucleus ventrolateral partipsiRveL1
Ventrolateral tegmental areaipsiVLTg2
Pedunculopontine tegmental nucleusipsiPPTg1
A5 noradrenaline cellsipsiA51
A7 noradrenaline cellsipsiA71
Locus coeruleusipsiLC2
Locus coeruleus ventral partipsiLCv-0.5
Parapyramidal nucleusipsiPPy-0.5
Magnocellular reticular nucleus alpha partipsiNRMCa-0.5
Koelliker Fuse nucleusipsiKF3
Lateral parabrachial nucleus crescent partipsiLPBCr1
Lateral parabrachial nucleus dorsal partipsiLPBD0.5
Lateral parabrachial nucleus external partipsiLPBE0.5
Lateral parabrachial nucleus ventral partipsiLPBV0.5
Caudal portion of the parabrachial nucleus central lateral partipsiPBCeLC0.5
Rostral portion of the parabrachial nucleus central lateral partipsiPBCeLR0.5
Parabrachial nucleus dorsal partipsiPBD-0.5
Parabrachial nucleus medialipsiPBnMe0.5
Medial parabrachial nucleus external partipsiMPBE0.5
Gigantocellular reticular nucleusipsiGi2
Gigantocellular reticular nucleus alpha partipsiGiA3
Gigantocellular reticular nucleus ventral partipsiGiV3
Medial subnucleus reticularis ventralisipsiMSRV2
Subcoeruleus nucleusipsiSubC1
Raphe magnus nucleusipsiRMg3
Raphe obscurus nucleusipsiROb1
Raphe pallidus nucleusipsiRPa1
Rostral ventrolateral medullaipsiRVLM-0.5
Paragigantocellular reticular nucleusipsiPGi1
Lateral paragigantocellular nucleusipsiLPGi3
Lateral paragigantocellular nucleus alpha partipsiLPBGiA2
Lateral paragigantocellular nucleus external partipsiLPBGiE1
Rostral ventral medulla oblongataipsiRVMeO3
Rostral part of the ventromedial medulla oblongataipsiRMeObvm3
Caudal ventromedial medulla oblongataipsiMeObcvm2
Dorsomedial hypothalamic nucleusipsiDMHy0
Lateral zoneipsiLHA3
Lateral hypothalamic areaipsiLH1
Dorsal hypothalamic areaipsiDA1
Ventromedial hypothalamic nucleusipsiVMH0
Arcuate nucleusipsiArc0
Paraventricular hypothalamic nucleus medial parvicellular part [Periventricular zone anterior region]ipsiPaMP-0.5
Paraventricular hypothalamic nucleus anterior parvicellular part [Periventricular zone anterior region]ipsiPaAP-0.5
Paraventricular hypothalamic nucleus posterior part [Periventricular zone anterior region]ipsiPaPo-0.5
Paraventricular hypothalamic nucleusipsiPa-0.5
Paraventricular hypothalamic nucleus magnocellular division posterior partipsiPaMagP1
Paraventricular hypothalamic nucleus dorsal parvocellular divisionipsiPavPoD-0.5
A11 dopamine cellsipsiA111
Perifornical nucleusipsiPeF3
Retrochiasmatic areaipsiRCh1
Parafascicular thalamic nucleus prerubral partipsiPFPR1
Zona incertaipsiZI0
Zona incerta most ventral borderipsiZIVb1
Fornixipsif1
Central cervical nucleus C1ipsiCeCvC13
Lateral cervical nucleus C1ipsiLatCC11
Lateral spinal nucleus C1ipsiLSpC11
Area X C1ipsiSCL10C12
Spinal cord layer 5 C1ipsiSCL5C12
Spinal cord layer 3 C1ipsiSCL3C10.5
Spinal cord layer 4 C1ipsiSCL4C10.5
Ventral horn C1ipsiVHC13
Central cervical nucleus C2ipsiCeCvC23
Lateral cervical nucleus C2ipsiLatCC21
Lateral spinal nucleus C2ipsiLSpC21
Area X C2ipsiSCL10C22
Spinal cord layer 5 C2ipsiSCL5C22
Spinal cord layer 3 C2ipsiSCL3C20.5
Spinal cord layer 4 C2ipsiSCL4C20.5
Ventral horn C2ipsiVHC23
Central cervical nucleus C3ipsiCeCvC33
Lateral cervical nucleus C3ipsiLatCC31
Lateral spinal nucleus C3ipsiLSpC31
Ventral horn C3ipsiVHC33
Dorsal root ganglion L2ipsiDRGL2-0.5
Dorsal root ganglion L3ipsiDRGL3-0.5
Dorsal root ganglion L5ipsiDRGL5-0.5
Paralemniscal nucleuscontraPL-0.5
Periaqueductal graycontraPAG0
Dorsolateral periaqueductal gray caudal partcontraPAGdlc0
Ventrolateral periaqueductal gray caudal partcontraPAGvlc0.5
Ventrolateral periaqueductal gray rostral partcontraPAGvlr0.5
Pedunculopontine tegmental nucleuscontraPPTg1
A5 noradrenaline cellscontraA50.5
A7 noradrenaline cellscontraA70.5
Locus coeruleuscontraLC1
Koelliker Fuse nucleuscontraKF3
Lateral parabrachial nucleus crescent partcontraLPBCr1
Lateral parabrachial nucleus dorsal partcontraLPBD0.5
Lateral parabrachial nucleus external partcontraLPBE0.5
Lateral parabrachial nucleus ventral partcontraLPBV0.5
Caudal portion of the parabrachial nucleus central lateral partcontraPBCeLC0.5
Rostral portion of the parabrachial nucleus central lateral partcontraPBCeLR0.5
Parabrachial nucleus medialcontraPBnMe2
Medial parabrachial nucleus external partcontraMPBE0.5
Gigantocellular reticular nucleuscontraGi1
Gigantocellular reticular nucleus alpha partcontraGiA1
Gigantocellular reticular nucleus ventral partcontraGiV1
Medial subnucleus reticularis ventraliscontraMSRV1
Subcoeruleus nucleuscontraSubC0.5
Raphe magnus nucleuscontraRMg1
Raphe pallidus nucleuscontraRPa-0.5
Lateral paragigantocellular nucleuscontraLPGi1
Lateral paragigantocellular nucleus alpha partcontraLPBGiA0.5
Rostral part of the ventromedial medulla oblongatacontraRMeObvm3
Caudal ventromedial medulla oblongatacontraMeObcvm1
A11 dopamine cellscontraA110.5
Parafascicular thalamic nucleus prerubral partcontraPFPR0.5
Central cervical nucleus C1contraCeCvC13
Lateral cervical nucleus C1contraLatCC11
Lateral spinal nucleus C1contraLSpC11
Area X C1contraSCL10C12
Spinal cord layer 5 C1contraSCL5C12
Spinal cord layer 3 C1contraSCL3C10.5
Spinal cord layer 4 C1contraSCL4C10.5
Ventral horn C1contraVHC13
Central cervical nucleus C2contraCeCvC23
Lateral cervical nucleus C2contraLatCC21
Lateral spinal nucleus C2contraLSpC21
Area X C2contraSCL10C22
Spinal cord layer 5 C2contraSCL5C22
Spinal cord layer 3 C2contraSCL3C20.5
Spinal cord layer 4 C2contraSCL4C20.5
Ventral horn C2contraVHC23
Central cervical nucleus C3contraCeCvC33
Lateral cervical nucleus C3contraLatCC31
Lateral spinal nucleus C3contraLSpC31
Ventral horn C3contraVHC33
Dorsal penile nerveipsidpn-0.5
Sciatic nerveipsisci3
Lumbar spinal nerve 4ipsispinL42
Peronal nervecontraperonal0.5
Sciatic nervecontrasci-0.5
Tibial nervecontratibial0.5

Key for weights

ValueWeight
-3 unknown
-2 fibers of passage
-1 not clear
-0.5 exists
0 not present
0.5 very light
1 light / sparse
1.5 light / moderate
2 moderate / dense
2.5 moderate / strong
3 strong
4 very strong





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