University of Rostock

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Rat connectome



Ventral horn L6 left


Abbreviation
VHL6
Color       
Superior regionsSpinal cord layers L6

SynonymsAbbr.Language
Ventral horn L6VHL6Eng

SubregionsSide
Intermediate zone L6left
Interneuron groups of layer 9 L6left
Motoneuron groups of layer 9 L6left
Spinal cord border cells L6left
Spinal cord layer 9 L6left
Ventral horn L6 lateral partleft

Output to

NameSideAbbr.WeightDetails
Central grayipsiCG1
Central gray dorsal partipsiCGD-0.5
Central gray dorsoventral partipsiCGDV-0.5
Central gray mediolateral partipsiCGMeL-0.5
Nucleus of DarkschewitschipsiDk-0.5
Area surrounding the oculomotor complexipsiASOCS-0.5
Red nucleusipsiR-1
Inferior colliculusipsiICOL1
Intercollicular nucleusipsiInCo-0.5
Superior colliculusipsiSC1
Commissure of the superior colliculusipsicsc-2
Superior colliculus intermediate layersipsiSCi-0.5
Superior colliculus deep layersipsiSCd-0.5
Tegmental areaipsiTGA-0.5
Laterodorsal tegmental nucleusipsiLDTg1
Posterior lobe of the cerebellumipsiCERCPL1
Ansiform lobule crus 1ipsiCrus11
Simple lobuleipsiSim1
Anterior lobeipsiAnL3
Cerebellar lobule 3ipsiCERL31
Cerebellar lobule 4ipsiCERL41
Cerebellar lobule 5ipsiCERL51
Paravermal region of anterior lobeipsiPVAnL1
Cerebellar lobule 7ipsiCERL71
Cerebellar lobule 6ipsiCERL61
Posterior lobe vermisipsiPLVERM1
Mesencephalic reticular formationipsiMRF1
Cuneiforme nucleusipsiCnF-0.5
Parabrachial nucleus dorsal partipsiPBD-0.5
Lateral reticular nucleusipsiLRt-0.5
Lateral reticular nucleus magnocellular partipsiLRtMC1
Lateral reticular nucleus parvicellular partipsiLRtPC2
Lateral reticular nucleus subtrigeminal partipsiLRtS51
Nucleus of the solitary tractipsiSol-0.5
Dorsal column nucleiipsiDCN2
Cuneate nucleusipsiCu-0.5
Paragigantocellular reticular nucleusipsiPGi-0.5
Lateral hypothalamic areaipsiLH1.5
Dorsal hypothalamic areaipsiDA1.5
Dorsomedial hypothalamic nucleus [Medial zone]ipsiDM0.5
Paraventricular hypothalamic nucleusipsiPa0.5
Suprachiasmatic nucleusipsiSCh0.5
Supraoptic nucleus [Supraoptic region]ipsiSO0.5
Submedius thalamic nucleusipsiSub1.5
Ventrobasal complex anterior partipsiVBa0.5
Zona incertaipsiZI-0.5
Central amygdaloid nucleusipsiCe0.5
Posterior commissureipsipc-2
Medial geniculate nucleus medial partipsiMGM-0.5
Spinomesencephalic tractipsismT-2
Lumbar segment 1ipsiL1-1
Spinal nucleus of the bulbocavernosus lumbal segment 6ipsiBCL63
Central graycontraCG-0.5
Tegmental areacontraTGA-0.5
Ansiform lobule crus 1contraCrus11
Simple lobulecontraSim1
Anterior lobecontraAnL-0.5
Paravermal region of anterior lobecontraPVAnL1
Cuneiforme nucleuscontraCnF-0.5
Lateral reticular nucleuscontraLRt-0.5
Lateral reticular nucleus magnocellular partcontraLRtMC3
Lateral reticular nucleus parvicellular partcontraLRtPC3
Lateral reticular nucleus subtrigeminal partcontraLRtS53
Midportion of the lateral reticular nucleuscontraMpLRt3
Paragigantocellular reticular nucleuscontraPGi-0.5
Lateral hypothalamic areacontraLH3
Dorsal hypothalamic areacontraDA3
Dorsomedial hypothalamic nucleus [Medial zone]contraDM3
Paraventricular hypothalamic nucleuscontraPa3
Suprachiasmatic nucleuscontraSCh3
Supraoptic nucleus [Supraoptic region]contraSO3
ThalamuscontraT-0.5
Submedius thalamic nucleuscontraSub3
Ventrobasal complex anterior partcontraVBa1
Central amygdaloid nucleuscontraCe0.5
Sural nerveipsisural3
Sciatic nerveipsisci-0.5
Extensor digitorum longusipsiMuscExtDigLong-0.5
Short plantar muscleipsiMuscSPM-0.5
Gastrocnemius muscleipsiMuscGC3
Soleus muscleipsiMuscSo-0.5
External urethral sphincter muscleipsiMuscEUS-0.5
Pelvic diaphragmipsiPelvicDia-0.5
ClitorisipsiOrgCLi-0.5
Seminal vesicleipsiOrgRepSV-10
Trigone of the urinary bladderipsiOrgUrBLaT-10

Input from

NameSideAbbr.WeightDetails
Periaqueductal grayipsiPAG0
Dorsolateral periaqueductal gray caudal partipsiPAGdlc0
Ventrolateral periaqueductal gray caudal partipsiPAGvlc0
Ventrolateral periaqueductal gray rostral partipsiPAGvlr0
Red nucleusipsiR3
Red nucleus ventrolateral partipsiRveL-0.5
Laterodorsal tegmental nucleusipsiLDTg1
Pedunculopontine tegmental nucleusipsiPPTg3
Interstitial nucleus of CajalipsiInC-0.5
A5 noradrenaline cellsipsiA50.5
A7 noradrenaline cellsipsiA70.5
Locus coeruleusipsiLC3
Locus coeruleus caudal partipsiLCca-0.5
Locus coeruleus ventral partipsiLCv-0.5
Parapyramidal nucleusipsiPPy-0.5
Magnocellular reticular nucleus alpha partipsiNRMCa-0.5
Ventrolateral medial reticular formationipsiVLRFm-0.5
Mesencephalic reticular formationipsiMRF-0.5
Pontine reticular nucleus caudal partipsiPNC-0.5
Gigantocellular reticular nucleusipsiGi2
Gigantocellular reticular nucleus alpha partipsiGiA3
Gigantocellular reticular nucleus ventral partipsiGiV3
Medial subnucleus reticularis ventralisipsiMSRV2
Subcoeruleus nucleusipsiSubC0.5
Lateral vestibular nucleusipsiLVe0.5
Raphe magnus nucleusipsiRMg3
Raphe obscurus nucleusipsiROb-0.5
Raphe pallidus nucleusipsiRPa-0.5
Paragigantocellular reticular nucleusipsiPGi-0.5
Lateral paragigantocellular nucleusipsiLPGi3
Lateral paragigantocellular nucleus alpha partipsiLPBGiA2
Lateral paragigantocellular nucleus external partipsiLPBGiE2
Rostral part of the ventromedial medulla oblongataipsiRMeObvm3
Caudal ventromedial medulla oblongataipsiMeObcvm3
Dorsomedial hypothalamic nucleusipsiDMHy0
Lateral zoneipsiLHA3
Lateral hypothalamic areaipsiLH1
Dorsal hypothalamic areaipsiDA1
Ventromedial hypothalamic nucleusipsiVMH0
Arcuate nucleusipsiArc0
Paraventricular hypothalamic nucleus medial parvicellular part [Periventricular zone anterior region]ipsiPaMP-0.5
Paraventricular hypothalamic nucleus anterior parvicellular part [Periventricular zone anterior region]ipsiPaAP-0.5
Paraventricular hypothalamic nucleus posterior part [Periventricular zone anterior region]ipsiPaPo-0.5
Paraventricular hypothalamic nucleusipsiPa-0.5
Paraventricular hypothalamic nucleus magnocellular division posterior partipsiPaMagP1
Paraventricular hypothalamic nucleus dorsal parvocellular divisionipsiPavPoD-0.5
Perifornical nucleusipsiPeF3
Retrochiasmatic areaipsiRCh1
Zona incertaipsiZI0
Zona incerta most ventral borderipsiZIVb1
Fornixipsif1
Spinal cord layer 3 L2ipsiSCL3L20.5
Spinal cord layer 4 L2ipsiSCL4L20.5
Spinal cord layer 2 L2ipsiSCL2L20.5
Spinal cord layer 3 L3ipsiSCL3L30.5
Spinal cord layer 4 L3ipsiSCL4L30.5
Spinal cord layer 2 L3ipsiSCL2L30.5
Spinal cord layer 3 L4ipsiSCL3L40.5
Spinal cord layer 4 L4ipsiSCL4L40.5
Spinal cord layer 2 L4ipsiSCL2L40.5
Dorsal root ganglion L5ipsiDRGL5-0.5
Periaqueductal graycontraPAG0
Dorsolateral periaqueductal gray caudal partcontraPAGdlc0
Ventrolateral periaqueductal gray caudal partcontraPAGvlc0
Ventrolateral periaqueductal gray rostral partcontraPAGvlr0
Laterodorsal tegmental nucleuscontraLDTg0.5
Pedunculopontine tegmental nucleuscontraPPTg3
A5 noradrenaline cellscontraA50.5
A7 noradrenaline cellscontraA70.5
Locus coeruleuscontraLC2
Gigantocellular reticular nucleuscontraGi1
Gigantocellular reticular nucleus alpha partcontraGiA1
Gigantocellular reticular nucleus ventral partcontraGiV1
Medial subnucleus reticularis ventraliscontraMSRV1
Subcoeruleus nucleuscontraSubC0.5
Raphe magnus nucleuscontraRMg1
Raphe pallidus nucleuscontraRPa-0.5
Lateral paragigantocellular nucleuscontraLPGi1
Lateral paragigantocellular nucleus alpha partcontraLPBGiA0.5
Rostral part of the ventromedial medulla oblongatacontraRMeObvm1
Caudal ventromedial medulla oblongatacontraMeObcvm2
Cerebral cortexcontraCEC1
Lateral agranular prefrontal cortexcontraAGl0.5
Medial agranular prefrontal cortexcontraAGm0.5
Primary somatosensory cortexcontraS10.5
Spinal cord layer 3 L2contraSCL3L20.5
Spinal cord layer 4 L2contraSCL4L20.5
Spinal cord layer 2 L2contraSCL2L20.5
Spinal cord layer 3 L3contraSCL3L30.5
Spinal cord layer 4 L3contraSCL4L30.5
Spinal cord layer 2 L3contraSCL2L30.5
Spinal cord layer 3 L4contraSCL3L40.5
Spinal cord layer 4 L4contraSCL4L40.5
Spinal cord layer 2 L4contraSCL2L40.5
Sural nerveipsisural-0.5
Sciatic nerveipsisci-0.5
Sciatic nervecontrasci-0.5
PeritoneumipsiOrgPeri-0.5

Key for weights

ValueWeight
-3 unknown
-2 fibers of passage
-1 not clear
-0.5 exists
0 not present
0.5 very light
1 light / sparse
1.5 light / moderate
2 moderate / dense
2.5 moderate / strong
3 strong
4 very strong





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