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Rat connectome



Ventral horn C5 right


Abbreviation
VHC5
Color       
Superior regionsSpinal cord layers C5

SynonymsAbbr.Language
Ventral horn C5VHC5Eng

SubregionsSide
Base of ventral horn C5right
Intermediate zone C5right
Intermediate zone of ventral horn C5right
Interneuron groups of layer 9 C1right
Motoneuron groups of layer 9 C5right
Spinal cord layer 9 C5right
Medial ventral horn C5right
Ventromedial motor nuclei of the ventral horn C5right
Ventral horn C5 dorsal partright

Output to

NameSideAbbr.WeightDetails
Central graycontraCG-0.5
Tegmental areacontraTGA-0.5
Cuneiforme nucleuscontraCnF-0.5
Caudal part of the lateral reticular nucleuscontraCaLRt3
Caudal two third of the lateral reticular nucleuscontraCaTTLRt3
Lateral reticular nucleus magnocellular partcontraLRtMC3
Lateral reticular nucleus parvicellular partcontraLRtPC1
Lateral reticular nucleus rostral partcontraLRtr1
Lateral reticular nucleus subtrigeminal partcontraLRtS50
Retrotrapezoid nucleuscontraRTN0.5
Lateral hypothalamic areacontraLH3
Dorsal hypothalamic areacontraDA3
Dorsomedial hypothalamic nucleus [Medial zone]contraDM3
Paraventricular hypothalamic nucleuscontraPa3
Suprachiasmatic nucleuscontraSCh3
Supraoptic nucleus [Supraoptic region]contraSO3
ThalamuscontraT-0.5
Submedius thalamic nucleuscontraSub3
Central amygdaloid nucleuscontraCe0.5
Central grayipsiCG1
Inferior colliculusipsiICOL1
Superior colliculusipsiSC1
Tegmental areaipsiTGA-0.5
Posterior lobe of the cerebellumipsiCERCPL1
Anterior lobeipsiAnL2
Mesencephalic reticular formationipsiMRF1
Cuneiforme nucleusipsiCnF-0.5
Gigantocellular reticular nucleusipsiGi3
Lateral reticular nucleusipsiLRt3
Ventral aspect of the caudal part of the lateral reticular nucleusipsiVCaLRt-2
Lateral reticular nucleus magnocellular partipsiLRtMC3
Lateral reticular nucleus parvicellular partipsiLRtPC1
Lateral reticular nucleus subtrigeminal partipsiLRtS52
Middle third of the lateral reticular nucleusipsiMTLRt1
Rostral third of the lateral reticular nucleusipsiRTLRt0
Spinal accessory nerveipsiSAN3
Nucleus of the solitary tractipsiSol-0.5
Dorsal column nucleiipsiDCN2
Retrotrapezoid nucleusipsiRTN1
Lateral hypothalamic areaipsiLH1.5
Dorsal hypothalamic areaipsiDA1.5
Dorsomedial hypothalamic nucleus [Medial zone]ipsiDM0.5
Paraventricular hypothalamic nucleusipsiPa0.5
Suprachiasmatic nucleusipsiSCh0.5
Supraoptic nucleus [Supraoptic region]ipsiSO0.5
Submedius thalamic nucleusipsiSub1.5
Lumbar segment 1ipsiL1-1
Facial nerveipsi7fn-0.5
Median nerveipsimen-2
Musculocutaneous nerveipsimuscut-2
Cervical phrenic nerveipsiphrenC-0.5
Radial nerveipsirad-2
Brachial plexusipsibraPlex-2
Biceps brachii muscleipsiMuscFxFoBB-0.5
Forelimb extensor digitorum communisipsiMuscFoEDC-0.5
Trapezius muscleipsiMuscTrap-0.5

Input from

NameSideAbbr.WeightDetails
Periaqueductal graycontraPAG0
Dorsolateral periaqueductal gray caudal partcontraPAGdlc0
Ventrolateral periaqueductal gray caudal partcontraPAGvlc0
Ventrolateral periaqueductal gray rostral partcontraPAGvlr0
Red nucleuscontraR4
Central tegmental fieldcontraTGAC3
Mesopontine tegmental area caudal partcontraTGAmc3
Mesopontine tegmental area rostral partcontraTGAmr2
Dorsal tegmental nucleus lateral partcontraDLTN3
Pedunculopontine tegmental nucleuscontraPPTg3
Interstitial nucleus of CajalcontraInC1
A5 noradrenaline cellscontraA51
A7 noradrenaline cellscontraA71
Locus coeruleuscontraLC2
Pontine nuclei caudal partcontraBPNc1
Pontine nucleus ventral partcontraBPNv0.5
Intermediate reticular nucleuscontraIRt0.5
Paramedian reticular nucleuscontraPMn1
Rostroventrolateral reticular nucleuscontraRVL0.5
Mesencephalic reticular formationcontraMRF0.5
Gigantocellular reticular nucleuscontraGi3
Gigantocellular reticular nucleus alpha partcontraGiA3
Gigantocellular reticular nucleus ventral partcontraGiV4
Medial medullary reticular nucleuscontraMMdD3
Medial subnucleus reticularis ventraliscontraMSRV1
Medullary reticular nucleus dorsal partcontraMdDd0.5
Ventromedial medullary reticular formationcontraVMMdD1
Parvicellular reticular nucleuscontraPCRt0.5
Parvicellular reticular nucleus alpha partcontraPCRtA0.5
Subcoeruleus nucleuscontraSubC2
Ambiguus nucleus compact partcontraAmbC0.5
Spinal vestibular nucleuscontraSpVe3
Superior vestibular nucleuscontraSuVe3
Medial vestibular nucleus caudal partcontraMVeP-0.5
Medial vestibular nucleus rostral partcontraMVeR-0.5
Lateral vestibular nucleuscontraLVe3
Raphe nucleicontraRAN3
Raphe magnus nucleuscontraRMg2
Raphe pallidus nucleuscontraRPa4
Caudoventral reticular nucleuscontraCVL0.5
Nucleus interfascicularis hypoglossicontraNIFH-0.5
Paragigantocellular reticular nucleuscontraPGi1
Dorsal paragigantocellular nucleuscontraDPGi0.5
Lateral paragigantocellular nucleuscontraLPGi1
Retrotrapezoid nucleuscontraRTN-0.5
Parafascicular thalamic nucleuscontraPF1
Parafascicular thalamic nucleus lateral partcontraPFL1
Cerebral cortexcontraCEC1
Somatomotoric regionscontraSMR3
Periaqueductal grayipsiPAG0
Dorsolateral periaqueductal gray caudal partipsiPAGdlc0
Ventrolateral periaqueductal grayipsiVLPAG1
Ventrolateral periaqueductal gray caudal partipsiPAGvlc0
Ventrolateral periaqueductal gray rostral partipsiPAGvlr0
Lateral pontine tegmentumipsiLPTG1
Red nucleusipsiR4
Dorsomedial portion of the red nucleus caudal partipsiRnCaDm-0.5
Red nucleus rostral partipsiRnRo-0.5
Red nucleus ventrolateral partipsiRveL-0.5
Central tegmental fieldipsiTGAC3
Mesopontine tegmental area caudal partipsiTGAmc3
Mesopontine tegmental area rostral partipsiTGAmr2
Dorsal tegmental nucleus lateral partipsiDLTN3
Pedunculopontine tegmental nucleusipsiPPTg3
Interstitial nucleus of CajalipsiInC1
A5 noradrenaline cellsipsiA51.5
A7 noradrenaline cellsipsiA71.5
Locus coeruleusipsiLC2
Locus coeruleus caudal partipsiLCca-0.5
Locus coeruleus ventral partipsiLCv-0.5
Parapyramidal nucleusipsiPPy-0.5
Dorsomedial tegmental areaipsiDMTg0.5
Pontine nuclei caudal partipsiBPNc2
Pontine nucleus ventral partipsiBPNv1
Intermediate reticular nucleusipsiIRt0.5
Paramedian reticular nucleusipsiPMn1
Rostroventrolateral reticular nucleusipsiRVL0.5
Mesencephalic reticular formationipsiMRF0.5
Parabrachial nucleusipsiPB-0.5
Rostral two-thirds of the Koelliker Fuse nucleusipsiKFrtt-0.5
Caudal one-third of the Koelliker Fuse nucleusipsiKFcot-0.5
Lateral parabrachial nucleusipsiLPB1
Parabrachial nucleus medialipsiPBnMe0.5
Gigantocellular reticular nucleusipsiGi4
Gigantocellular reticular nucleus alpha partipsiGiA4
Gigantocellular reticular nucleus ventral partipsiGiV4
Lateral reticular nucleusipsiLRt0.5
Medial medullary reticular nucleusipsiMMdD3
Medial subnucleus reticularis ventralisipsiMSRV1
Medullary reticular nucleus dorsal partipsiMdDd1
Ventromedial medullary reticular formationipsiVMMdD2
Parvicellular reticular nucleusipsiPCRt0.5
Parvicellular reticular nucleus alpha partipsiPCRtA0.5
Subcoeruleus nucleusipsiSubC2
Ambiguus nucleus compact partipsiAmbC0.5
Spinal vestibular nucleusipsiSpVe3
Superior vestibular nucleusipsiSuVe3
Medial vestibular nucleus caudal partipsiMVeP-0.5
Medial vestibular nucleus rostral partipsiMVeR-0.5
Lateral vestibular nucleusipsiLVe3
Nucleus of the solitary tract ventrolateral partipsiSolVL-0.5
Raphe nucleiipsiRAN3
Caudal raphe nucleiipsiRANc-0.5
Raphe magnus nucleusipsiRMg3
Raphe obscurus nucleusipsiROb3
Raphe pallidus nucleusipsiRPa4
Ventral lateral medulla oblongataipsiMVL-0.5
Caudoventral reticular nucleusipsiCVL0.5
Nucleus interfascicularis hypoglossiipsiNIFH-0.5
Paragigantocellular reticular nucleusipsiPGi1
Dorsal paragigantocellular nucleusipsiDPGi0.5
Lateral paragigantocellular nucleusipsiLPGi2
Retrotrapezoid nucleusipsiRTN-0.5
Lateral hypothalamic areaipsiLH1
Midlateral posterior hypothalamic areaipsiPHAmL0
Paraventricular hypothalamic nucleusipsiPa-0.5
Parafascicular thalamic nucleusipsiPF1
Parafascicular thalamic nucleus lateral partipsiPFL1
Zona incertaipsiZI-0.5
Somatomotoric regionsipsiSMR3
Dorsal root ganglion C2ipsiDRGC21
Dorsal root ganglion C5ipsiDRGC51
Dorsal root ganglion C7ipsiDRGC7-0.5
Intermediolateral cell column T1ipsiIMLT10
Intermediolateral cell column T2ipsiIMLT20
Intermediolateral cell column T3ipsiIMLT30
Intermediolateral cell column T4ipsiIMLT40

Key for weights

ValueWeight
-3 unknown
-2 fibers of passage
-1 not clear
-0.5 exists
0 not present
0.5 very light
1 light / sparse
1.5 light / moderate
2 moderate / dense
2.5 moderate / strong
3 strong
4 very strong





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