University of Rostock

Department of Anatomy

Neuroscience Group

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Rat connectome



Substantia nigra reticular part caudal tier left


Abbreviation
SNRca
Color       
Superior regionsSubstantia nigra reticular part

SynonymsAbbr.Language
Substantia nigra reticular part caudal tierSNRca 
Caudal part of substantia nigra reticular part  
Substantia nigra reticular part caudal part Eng

SubregionsSide
Caudal substantia nigra reticular lateral regionleft
Dorsolateral half of the caudal part of the substantia nigra reticular partleft
Substantia nigra reticular part caudal tier medial partleft
Substantia nigra reticular part caudal quarterleft
Substantia nigra reticular part caudal tier central partleft
Substantia nigra reticular part caudal tier mediolaterallyleft

Output to

NameSideAbbr.WeightDetails
Medulla oblongataipsiMeOb2
Centrolateral thalamic nucleusipsiCL0
Paracentral thalamic nucleusipsiPC1
Parafascicular thalamic nucleus lateral partipsiPFL2
Mediodorsal thalamic nucleus lateral partipsiMDL2
Ventro anterior thalamic nucleusipsiVA1
Ventrolateral thalamic nucleusipsiVL1
Ventromedial thalamic nucleusipsiVM-0.5
Ventromedial thalamic nucleus superolateral partipsiVMsL1
Reticular thalamic nucleusipsiRt0
Zona incertaipsiZI1
Cerebral peduncle basal partipsicp1
Caudate putamenipsiCPu2
Caudal striatumipsiCPuc2
Dorsolateral striatumipsiCPudl2
Rostral striatumipsiCPur-0.5
Rostrodorsal striatumipsiCPurd2
Caudate putamen rostrobasal partipsiCPurb-0.5
Central medial thalamic nucleuscontraCM1
Parafascicular thalamic nucleus lateral partcontraPFL1
Caudate putamencontraCPu-0.5

Input from

NameSideAbbr.WeightDetails
Substantia nigra compact part ventral tieripsiSNCV2
Medial globus pallidusipsiMGP0.5
Rostral pole of the accumbens nucleusipsiAcbRP2
Caudate putamenipsiCPu4
Dorsally in the medial part of the dorsal striatumipsiCPudmd-0.5
Subthalamic nucleusipsiSTh2.5

Key for weights

ValueWeight
-3 unknown
-2 fibers of passage
-1 not clear
-0.5 exists
0 not present
0.5 very light
1 light / sparse
1.5 light / moderate
2 moderate / dense
2.5 moderate / strong
3 strong
4 very strong





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