University of Rostock

Department of Anatomy

Neuroscience Group

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Rat connectome



Substantia nigra reticular part rostral tier left


Abbreviation
SNRro
Color       
Superior regionsSubstantia nigra reticular part

SynonymsAbbr.Language
Substantia nigra reticular part rostral tierSNRroEng

SubregionsSide
Rostral substantia nigra reticular ventromedial regionleft
Rostral two-thirds of the substantia nigra reticular partleft
Substantia nigra reticular part rostral one fifthleft

Output to

NameSideAbbr.WeightDetails
MesencephalonipsiMEC2
Superior colliculusipsiSC-0.5
Superior colliculus caudal part deep layersipsicSCdL3
Superior colliculus layersipsiSCLa-0.5
Superior colliculus deep layers caudal partipsiSCdc1
Mammillothalamic tractipsimt-2
Central medial thalamic nucleusipsiCM2
Centrolateral thalamic nucleusipsiCL2
Paracentral thalamic nucleusipsiPC2
Posterior thalamic nuclear groupipsiPo-2
Mediodorsal thalamic nucleus lateral partipsiMDL2
Ventro anterior thalamic nucleusipsiVA1
Ventrolateral thalamic nucleusipsiVL1
Ventromedial thalamic nucleusipsiVM2
Reticular thalamic nucleus rostral partipsiRtr2
Zona incertaipsiZI2
Cerebral peduncle basal partipsicp1
Ventral pallidumipsiVP-2
Caudate putamenipsiCPu-0.5
Dorsal striatumipsiCPud0
Rostral striatumipsiCPur2
Superior colliculus deep layers caudal partcontraSCdc0.5
Parafascicular thalamic nucleus inferior partcontraPFinf1
Mediodorsal thalamic nucleus lateral partcontraMDL0
Ventromedial thalamic nucleuscontraVM1
Caudate putamencontraCPu-0.5

Input from

NameSideAbbr.WeightDetails
Substantia nigra compact part ventral tieripsiSNCV2
Caudate putamenipsiCPu-0.5
Dorsally in the medial part of the dorsal striatumipsiCPudmd-0.5
Middle caudate putamen dorsoventrallyipsiCPuMidv-0.5

Key for weights

ValueWeight
-3 unknown
-2 fibers of passage
-1 not clear
-0.5 exists
0 not present
0.5 very light
1 light / sparse
1.5 light / moderate
2 moderate / dense
2.5 moderate / strong
3 strong
4 very strong





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