University of Rostock

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Rat connectome



Dorsal striatum left


Abbreviation
CPud
Color       
Superior regionsCaudate putamen

SynonymsAbbr.Language
 DStr 
Nonlimbic striatum  
Non limbic striatum  
Dorsal portion of the caudoputamen nucleus Eng
Dorsal striatumCPudEng
Dorsal region of the CPu Eng
Dorsal caudate nucleus Eng
Motor striatum Eng
Non-limbic striatum Eng
Putamen Eng
Sensorimotor territory of striatum Eng

SubregionsSide
Caudal two-thirds of the dorsal striatumleft
Dorsal caudate putamen caudal partleft
Dorsal striatum caudoventral partleft
Dorsal striatum central partleft
Dorsal striatum chemoarchitectonic compartmentsleft
Dorsal striatum ventral partleft
Dorsal striatum ventromedial partleft
Medial part of the dorsal striatumleft
Dorsal half of the striatumleft
Dorsal striatum rostrocaudal partleft
Dorsocentral striatumleft
Dorsolateral striatumleft
Dorsoventral extent of the striatumleft
Dorsal striatum ventrolateral partleft
Dorsal striatum rostral portionleft

Output to

NameSideAbbr.WeightDetails
Superior colliculus rostral partipsirSC2
Substantia nigra A9ipsiSN3
Substantia nigra compact partipsiSNC3
Substantia nigra compact part caudal tieripsiSNCC0
Substantia nigra compact part dorsal tieripsiSNCD2
Substantia nigra compact part medial tieripsiSNCM1
Substantia nigra lateral partipsiSNL1.5
Substantia nigra medial partipsiSNM3
Substantia nigra reticular partipsiSNR3
Substantia nigra reticular part dorsal tieripsiSNRD1
Substantia nigra reticular part dorsoventral partipsiSNRdv-0.5
Substantia nigra reticular part lateral tieripsiSNRL2
Substantia nigra reticular part mediolateral partipsiSNRmL3
Substantia nigra reticular part ventral subdivisionipsiSNRv2
Substantia nigra reticular part ventromedial tieripsiSNRVM3
Substantia nigra rostrocaudal partipsiSNrc-0.5
Ventral tegmental area A10ipsiVTA3
Peripeduncular nucleusipsiPP1.5
Basal nucleus MeynertipsiB1
Dorsal entopeduncular groupipsiDEG2
Lateral hypothalamic areaipsiLH3
Medial hypothalamic groupipsiMHYPOg-1
Centrolateral thalamic nucleusipsiCL2
Parafascicular thalamic nucleusipsiPF2
Lateral group of the dorsal thalamusipsiLAT3
Ventromedial thalamic nucleusipsiVM2
Posterior intralaminar thalamic nucleusipsiPIL1.5
Zona incertaipsiZI3
Nucleus of the fields of ForelipsiF3
Optic tractipsiopt3
Internal capsuleipsiic3
Cerebral peduncle basal partipsicp3
Medial lemniscusipsiml3
Amygdaloid complexipsiAC-1
Globus pallidusipsiGP2
Dorsal globus pallidusipsiDGP2
Lateral globus pallidusipsiLGP-0.5
Medial globus pallidusipsiMGP3
Ventral pallidumipsiVP1.5
Lateral nucleus accumbensipsiAcl-0.5
Caudate putamenipsiCPu-0.5
Fundus of the striatum caudal partipsiFSc-0.5
Fundus of the striatum rostral partipsiFSr-0.5
Subthalamic nucleusipsiSTh3
Parasubthalamic nucleusipsiPSTh1
Piriform cortexipsiPir-1
Somatomotoric regionsipsiSMR1
Motoric regionsipsiM3
Motoric regions layer 1ipsiMRL13
Motoric regions layer 2ipsiMRL23
Motoric regions layer 3ipsiMRL33
Motoric regions layer 5ipsiMRL53
Motoric regions layer 6ipsiMRL63
Motoric regions layer 4ipsiMRL43
Medial geniculate nucleusipsiMG1.5
Interpeduncular nucleus rostral subnucleus central partipsiIPRce0
Somatomotoric regionscontraSMR1
Motoric regionscontraM3
Motoric regions layer 1contraMRL13
Motoric regions layer 2contraMRL23
Motoric regions layer 3contraMRL33
Motoric regions layer 5contraMRL53
Motoric regions layer 6contraMRL63
Motoric regions layer 4contraMRL43

Input from

NameSideAbbr.WeightDetails
Peduncularpontine nucleus caudal levelsipsiPPNCa-10
Substantia nigra A9ipsiSN-0.5
Substantia nigra A9 dorsal partipsiSND-0.5
Substantia nigra compact partipsiSNC4
Anterior-posterior extent of the substantia nigra compact partipsiSNCAPe-0.5
Substantia nigra compact part caudal tieripsiSNCC2
Substantia nigra compact part caudallateral tieripsiSNCCL3
Substantia nigra compact part dorsal tieripsiSNCD3
Substantia nigra compact part lateral tieripsiSNCL3
Substantia nigra compact part medial tieripsiSNCM2
Dorsal margin of the substantia nigra compact part medial tieripsiSNCMD-0.5
Substantia nigra compact part mediolateral tieripsiSNCML-0.5
Substantia nigra compact part rostral tieripsiSNCr3
Substantia nigra compact part ventral tieripsiSNCV2
Substantia nigra compact part anteroposterior partipsiSNCap-0.5
Substantia nigra compact part ventromedial partipsiSNCvm3
Substantia nigra lateral partipsiSNL2
Substantia nigra medial partipsiSNM-0.5
Substantia nigra reticular partipsiSNR1
Lateral half of the middle third of the substantia nigra reticular partipsiSNRLhMt1
Substantia nigra reticular part dorsal tieripsiSNRD1
Substantia nigra reticular part medial tieripsiSNRm-0.5
Substantia nigra reticular part medial tier mediallyipsiSNRmm-0.5
Substantia nigra reticular part medial tier centrallyipsiSNRmce-0.5
Substantia nigra reticular part medial tier laterallyipsiSNRmLa-0.5
Substantia nigra reticular part rostral tieripsiSNRro0
Ventral tegmental area A10ipsiVTA2
Ventral tegmental area A10 dorsolateral partipsiVTAdL-0.5
Interfascicular nucleusipsiIF0.5
Ventral tegmental tailipsiVTTa0
Parabrachial pigmented nucleusipsiPBP4
Paranigral nucleusipsiPN0.5
Caudal linear nucleus of the rapheipsiCLi0.5
Peripeduncular nucleusipsiPP2
Retrorubral nucleusipsiRR1
Ventral tegmental decussationipsivtgx1
Dorsal raphe nucleusipsiDR3
Rostral linear nucleus of the rapheipsiRLi0
Ventral lateral medulla oblongataipsiMVL1
Lateral paragigantocellular nucleusipsiLPGi-0.5
Lateral zoneipsiLHA0.5
Lateral hypothalamic areaipsiLH0.5
A8 dopamine cells retrorubral groupipsiRRF2
ThalamusipsiT-0.5
Anterodorsal thalamic nucleus rostrodorsal tipipsiADrd-2
Anterodorsal thalamic nucleus rostroventral tipipsiADrv-2
Anteromedial thalamic nucleusipsiAM1
Anteromedial thalamic nucleus caudalmost partipsiAMcm1
Anteromedial thalamic nucleus rostral partipsiAMr0.5
Anteroventral thalamic nucleusipsiAV1
Anteroventral thalamic nucleus parvicellular part rostrodorsal partipsiAVpaRD-2
Intralaminar nuclei of the dorsal thalamusipsiILM-0.5
Central medial thalamic nucleusipsiCM3
Central medial thalamic nucleus rostral partipsiCMr-0.5
Centrolateral thalamic nucleusipsiCL3
Paracentral thalamic nucleusipsiPC3
Parafascicular thalamic nucleusipsiPF3
Parafascicular thalamic nucleus caudal partipsiPFc2
Parafascicular thalamic nucleus dorsal partipsiPFd-0.5
Parafascicular thalamic nucleus intermediate partipsiPFi2
Parafascicular thalamic nucleus lateral partipsiPFL-0.5
Lateral parafascicular thalamic nucleus lateral partipsiPFLL2
Retroparafascicular nucleusipsiRPF0.5
Posterior thalamic nuclear groupipsiPo2
Suprageniculate thalamic nucleusipsiSG2
Medial group of the dorsal thalamusipsiMED1
Mediodorsal thalamic nucleusipsiMD2
Paratenial thalamic nucleusipsiPT1
Paraventricular thalamic nucleusipsiPV-0.5
Paraventricular thalamic nucleus caudal partipsiPVca-0.5
Reuniens thalamic nucleusipsiRe-0.5
Ventral anterior-lateral complex of the thalamusipsiVAL1.5
Ventrolateral thalamic nucleusipsiVL1.5
Ventral posterolateral thalamic nucleusipsiVPL1.5
Ventral posteromedial thalamic nucleusipsiVPM1.5
Ventromedial thalamic nucleusipsiVM1
Ventromedial thalamic nucleus dorsal partipsiVMTd-0.5
Ethmoid thalamic nucleusipsiEth2
Intralaminar nucleiipsiILN-0.5
Intralaminar nuclei lateral partipsiILNL-0.5
Posterior intralaminar thalamic nucleusipsiPIL2
Parafascicular centre-median complexipsiPFCM-0.5
Ventrolateral regions of the rostral intralaminar nucleiipsiVLrILN-0.5
Lateral posterior thalamic nucleusipsiLP1
Lateral posterior thalamic nucleus mediorostral part central and lateral regionipsiLPMRcel2
Laterodorsal thalamic nucleusipsiLD1
Subparafascicular thalamic nucleusipsiSPF3
Ventral medial nucleus of the thalamusipsiVMT1.5
Zona incertaipsiZI0.5
Dorsal bank of rhinal fissureipsiDBrf-1
Ventral bank of the rhinal fissureipsiVBrf-1
Amygdaloid complexipsiAC2.5
Basolateral amygdaloid nucleusipsiBL1
Anterior basolateral nucleusipsiBLA3
Basolateral nucleus medial portionipsiBLmp2
Basolateral nucleus rostral partipsiBLRP2
Posterior basolateral nucleusipsiBLP1
Ventral basolateral nucleusipsiBLV-0.5
Basomedial amygdaloid nucleusipsiBM-0.5
Lateral amygdaloid nucleusipsiLA-0.5
Central amygdaloid nucleusipsiCe-0.5
Lateral capsular subdivision of the central nucleus of the amygdalaipsiCeLac1
Posterior amygdaloid nucleusipsiCOAp0
Medial amygdaloid nucleusipsiMe0
Amygdalohippocampal areaipsiAHi0
Dorsal part of claustrumipsiDCl-0.5
Rostral part of claustrumipsiRCl-0.5
Globus pallidusipsiGP3
Lateral nucleus accumbensipsiAcl-0.5
Caudate putamenipsiCPu-0.5
Fundus of the striatum caudal partipsiFSc-0.5
Fundus of the striatum rostral partipsiFSr-0.5
Subthalamic nucleusipsiSTh3
Cerebral cortexipsiCEC-0.5
SubiculumipsiS0
Cerebral cortex layer 5ipsiCCL5-0.5
Cingulate cortexipsiCg2
Cingulate cortex area 1 caudal partipsiCg1c3
Dorsal anterior cingulate cortexipsiDACC2
Prelimbic cortexipsiPrL3
Prelimbic cortex layer 5ipsiPrLL53
Infralimbic cortex lateral partipsiILLa-0.5
NeocortexipsiNEOCX-0.5
Frontal association cortexipsiFrA2
Frontal cortex area 1ipsiFr12
Frontal cortex area 2ipsiFr23
Frontal cortex area 3ipsiFr32
Auditory regionsipsiAU-0.5
Insular cortexipsiICX0
Agranular insular cortex dorsal partipsiAID-0.5
Visceral dysgranular insular cortex layer 2ipsiDIvL22
Visceral dysgranular insular cortex layer 3ipsiDIvL32
Visceral dysgranular insular cortex layer 6ipsiDIvL62
Perirhinal cortexipsiA35-0.5
Frontal pole of prefrontal cortexipsiFPFC-0.5
Somatomotoric regionsipsiSMR-0.5
Motoric regionsipsiM2
Lateral agranular prefrontal cortex layer 5ipsiAGlL53
Lateral agranular prefrontal cortex layer 6ipsiAGlL63
Primary motor cortex genital areaipsiM1ge-0.5
Motoric regions layer 5ipsiMRL53
Motoric regions layer 6ipsiMRL62
Motoric regions layer 4ipsiMRL42
Medial agranular prefrontal cortexipsiAGm3
Medial agranular prefrontal cortex rostral partipsirAGm3
Primary somatosensory cortexipsiS12
Posteromedial barrel subfield C2 caudal partipsiPMBSFC2c3
Posteromedial barrel subfield D1 caudal partipsiPMBSFD1c3
Posteromedial barrel subfield D2 caudal partipsiPMBSFD2c3
Posteromedial barrel subfield D5 caudal partipsiPMBSFD5c3
Primary somatosensory cortex layer 5ipsiS1L53
Primary somatosensory cortex layer 6ipsiS1L62
Primary somatosensory cortex layer 4ipsiS1L42
Secondary somatosensory cortexipsiS21
Secondary somatosensory cortex layer 2ipsiS2L22
Secondary somatosensory cortex layer 3ipsiS2L32
Secondary somatosensory cortex layer 6ipsiS2L62
Visual regionsipsiVR-0.5
Primary visual cortexipsiV13
Secondary visual cortex lateral areaipsiV2L3
Rostral two-thirds of secondary visual cortexipsiV2Rtt3
Dorsolateral orbital cortexipsiDLO-0.5
Lateral orbital cortex rostral partipsiLOr-0.5
Ventral part of the lateral orbital cortexipsiVeLO-0.5
Ventrolateral orbital area rostral partipsiVLOr-0.5
Ventromedial orbital cortexipsiOrCvm-0.5
Neocortex layer 5ipsiNEOCXL53
Dorsal portion of the neocortexipsiNEOCXD-0.5
Medial geniculate nucleus dorsal partipsiMGD2
Medial geniculate nucleus medial partipsiMGM3
Medial geniculate nucleus ventral partipsiMGV2
Spinal cord layers C1ipsiSCLC12
Spinal cord layers C2ipsiSCLC22
Spinal cord layers C3ipsiSCLC31
Spinal cord layers C4ipsiSCLC41
Spinal cord layers C5ipsiSCLC51
Spinal cord layers C6ipsiSCLC61
Spinal cord layers C7ipsiSCLC71
Spinal cord layers C8ipsiSCLC81
Spinal cord layers T1ipsiSCLT11
Ventral midbrain tegmentumcontraVeMT-0.5
Substantia nigra compact partcontraSNC1
Substantia nigra compact part lateral tiercontraSNCL1
Substantia nigra compact part medial tiercontraSNCM0.5
Substantia nigra reticular partcontraSNR0
Ventral tegmental area A10contraVTA0.5
Ventral tegmental decussationcontravtgx0.5
Ventral tegmental nucleuscontraVTg-0.5
Ventral lateral medulla oblongatacontraMVL2
Basolateral nucleus medial portioncontraBLmp1
Central amygdaloid nucleuscontraCe-0.5
Motoric regionscontraM1
Motoric regions layer 3contraMRL31
Motoric regions layer 5contraMRL51
Medial agranular prefrontal cortex rostral partcontrarAGm3
Primary somatosensory cortex layer 5contraS1L51
Primary somatosensory cortex layer 3contraS1L31
Primary visual cortexcontraV11
Spinal cord layers C1contraSCLC12
Spinal cord layers C2contraSCLC22
Spinal cord layers C3contraSCLC31
Spinal cord layers C4contraSCLC41
Spinal cord layers C5contraSCLC51
Spinal cord layers C6contraSCLC61
Spinal cord layers C7contraSCLC71
Spinal cord layers C8contraSCLC81
Spinal cord layers T1contraSCLT11

Key for weights

ValueWeight
-3 unknown
-2 fibers of passage
-1 not clear
-0.5 exists
0 not present
0.5 very light
1 light / sparse
1.5 light / moderate
2 moderate / dense
2.5 moderate / strong
3 strong
4 very strong





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