University of Rostock

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Rat connectome



Primary auditory cortex layer 5 left


Abbreviation
Au1L5
Color       
Superior regionsPrimary auditory cortex layers

SynonymsAbbr.Language
Primary auditory cortex layer 5Au1L5 

SubregionsSide
Primary auditory cortex layer 5 aleft
Primary auditory cortex layer 5 bleft
Primary auditory cortex middle part of layer 5left
Primary auditory cortex layer 5 medium sized pyramidal cellsleft
Primary auditory cortex sublayer 3 of layer 5left
Primary auditory cortex sublayer 4 of layer 5left
Primary auditory cortex layer 5 nonpyramidal cellsleft
Primary auditory cortex layer 5 small sized pyramidal cellsleft
Primary auditory cortex layer 5 pyramidal cellsleft
Primary auditory cortex lower half of layer 5left

Output to

NameSideAbbr.WeightDetails
Inferior colliculusipsiICOL3
Central nucleus of the inferior colliculusipsiCIC3
Tegmental areaipsiTGA0.5
Reticulotegmental nucleusipsiRETn0.5
Pontine nucleiipsiPn1.5
Ventral nucleus of the trapezoid bodyipsiVNTB1
Ventrobasal complex posterior partipsiVBp3
Subparafascicular thalamic nucleusipsiSPF2
Corpus callosumipsicc-2
Dorsomedial striatumipsiCPudm3
Primary auditory cortexipsiAu14
Perirhinal cortexipsiA353
Lateral geniculate complexipsiLG3
Medial geniculate nucleusipsiMG3
Pyramidal tractipsipy0
Central nucleus of the inferior colliculuscontraCIC0
Pontine nucleicontraPn0.5
Subparafascicular thalamic nucleuscontraSPF1
Auditory regionscontraAU3

Input from

NameSideAbbr.WeightDetails
Suprageniculate thalamic nucleusipsiSG2.5
Anterior insular cortexipsiICXa3
Medial geniculate nucleus ventral partipsiMGV0.5

Key for weights

ValueWeight
-3 unknown
-2 fibers of passage
-1 not clear
-0.5 exists
0 not present
0.5 very light
1 light / sparse
1.5 light / moderate
2 moderate / dense
2.5 moderate / strong
3 strong
4 very strong





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