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Rat connectome



Central nucleus of the inferior colliculus left


Abbreviation
CIC
Color       
Superior regionsInferior colliculus

SynonymsAbbr.Language
 ICc 
 CNIC 
Inferior colliculus central nucleus  
Central subdivision of inferior colliculus Eng
Central part of inferior colliculus Eng
Central nucleus of the inferior colliculusCICEng
Central nucleus of inferior colliculus Eng

SubregionsSide
Center of the central nucleus of the inferior colliculusleft
Central nucleus of the inferior colliculus dorsal partleft
Central nucleus of the inferior colliculus ventral partleft
Dorsolateral part of central nucleus of the inferior colliculusleft
Dorsomedial part of central nucleus of the inferior colliculusleft
Dorsomedial to the central nucleus of the inferior colliculusleft
Fibrodendritic laminae of the central nucleus of the inferior colliculusleft
Intermediate part of the central part of the inferior colliculusleft
Multipolar cells of the central nucleus of the inferior colliculusleft
Ventromedial part of the central nucleus of the inferior colliculusleft
Central nucleus of the inferior colliculus rostral partleft
Lateral part of the central nucleus of the inferior colliculusleft
Basolateral part of the central nucleus of the inferior colliculusleft
Ventrolateral part of the central nucleus of the inferior colliculusleft
Central nucleus of the inferior colliculus caudal partleft

Output to

NameSideAbbr.WeightDetails
Central gray pons partipsiCGP0
Dorsal nucleus of the lateral lemniscusipsiDLL3
Lateral part of the dorsal nucleus of the lateral lemniscusipsiDLLL3
Central part of the dorsal nucleus of the lateral lemniscusipsiDLLC1
Intermediate nucleus of the lateral lemniscusipsiILL2
Ventral nucleus of the lateral lemniscusipsiVLL2
Horizontal cell group of the lateral lemniscusipsiHCG0
Sagulum nucleusipsiSag3
Inferior colliculusipsiICOL3
Brachium of the inferior colliculusipsibic3
Central nucleus of the inferior colliculusipsiCIC3
Dorsomedial part of central nucleus of the inferior colliculusipsiDMCIC-0.5
Ventrolateral part of the central nucleus of the inferior colliculusipsiCICvL-0.5
Commissure of the inferior nucleusipsicic-2
Dorsal surface of the inferior colliculusipsiICOLDs-0.5
External cortex of the inferior colliculus layer 1ipsiECICL1-2
External cortex of the inferior colliculus layer 2ipsiECICL22
External cortex of the inferior colliculus ventral portion layer 3ipsiECICvL3-0.5
Dorsal cortex of the inferior colliculusipsiDCIC-0.5
Dorsal cortex of the inferior colliculus layer 3ipsiDCICL33
Dorsal cortex of the inferior colliculus layer 1ipsiDCICL13
Dorsal cortex of the inferior colliculus layer 2ipsiDCICL23
Inferior colliculus lateral partipsiICOLL3
Superior colliculusipsiSC2
Commissure of the superior colliculusipsicsc-0.5
Tectal longitudinal columnipsiTCL1
Caudal tectal longitudinal columnipsiCTCL3
Rostral tectal longitudinal columnipsiRTCL2
Tegmental areaipsiTGA0
Peripeduncular areaipsiPPA0
Ventrolateral tegmental areaipsiVLTg0
Reticular systemipsiRF-0.5
Pontine reticular nucleusipsiPRN-0.5
Medial trapezoid nucleusipsiMTz0.5
Ventral nucleus of the trapezoid bodyipsiVNTB3
Rostrocaudal extent of the ventral nucleus of the trapezoid bodyipsiVNTBrc2
Ventral most portion of the trapezoid bodyipsiVMVNTB2
Cochlear nucleusipsiCON-0.5
Dorsal cochlear nucleusipsiDC3
Ventral cochlear nucleusipsiVC3
Periolivary areaipsiPOA-0.5
Lateroventral periolivary nucleusipsiLVPO-0.5
Medioventral periolivary nucleusipsiMVPO0.5
Rostral periolivary regionipsiRPO3
Superior oliveipsiSuOLi3
Lateral superior oliveipsiLSO0.5
Medial superior oliveipsiMSO-0.5
Superior paraolivary nucleusipsiSPO0.5
Lateral paragigantocellular nucleusipsiLPGi-0.5
Juxtafacial paragigantocellular reticular nucleusipsiJPGi1
Suprageniculate thalamic nucleusipsiSG1
Ventral posteromedial thalamic nucleus posterior partipsiVPMP2
Subparafascicular thalamic nucleusipsiSPF0
Subparafascicular thalamic nucleus caudal partipsiSPFc1
Ventral thalamus rostral partipsiVNTR-0.5
Zona incerta lateral partipsiZIL0
Anterior pretectal nucleusipsiAPT1
Tectal commissural nucleusipsiTCoN-0.5
Lateral lemniscusipsill-2
Ventral half of the lateral lemniscusipsillvh3
Central amygdaloid nucleusipsiCe2
Central amygdaloid nucleus dorsal partipsiCed2
Central amygdaloid nucleus ventral partipsiCeV2
Caudal globus pallidusipsiGPc-3
Cerebral cortexipsiCEC-0.5
Medial geniculate nucleusipsiMG3
Lateromedial part of medial geniculate nucleus dorsal partipsiMGDLM2
Medial geniculate nucleus dorsal part medial subdivisionipsiMGDm1
Rostrocaudal part of medial geniculate nucleus dorsal partipsiMGDRC2
Medial geniculate nucleus medial partipsiMGM3
Medial geniculate nucleus ventral partipsiMGV-0.5
Dorsal part of medial geniculate nucleus ventral partipsiMGVD3
Lateromedial part of medial geniculate nucleus ventral partipsiMGVLM2
Medial geniculate nucleus ventral part medial partipsiMGVm1
Rostrocaudal part of medial geniculate nucleus ventral partipsiMGVRC2
Dorsal nucleus of the lateral lemniscuscontraDLL3
Inferior colliculuscontraICOL3
Brachium of the inferior colliculuscontrabic2
Ventral division of the caudal inferior colliculuscontraICOLCV3
Central nucleus of the inferior colliculuscontraCIC3
Center of the central nucleus of the inferior colliculuscontraCICC-0.5
Central nucleus of the inferior colliculus ventral partcontraCICV1
Deepest part of the ventral central nucleus of the inferior colliculuscontraCICVd3
External cortex of the inferior colliculuscontraECIC1
External cortex of the inferior colliculus layer 1contraECICL1-2
External cortex of the inferior colliculus layer 2contraECICL21
External cortex of the inferior colliculus ventral portion layer 3contraECICvL3-0.5
Dorsal cortex of the inferior colliculuscontraDCIC1
Dorsal cortex of the inferior colliculus dorsoventral part layer 1contraDCICdvL11.5
Dorsal cortex of the inferior colliculus dorsoventral part layer 2contraDCICdvL21.5
Dorsal cortex of the inferior colliculus dorsoventral part layer 3contraDCICdvL31.5
Dorsocaudal region near the dorsal cortex and lateral cortex bordercontraICOLDLdc0
Inferior colliculus lateral partcontraICOLL-0.5
Inferior colliculus lateral part layerscontraICOLLa0
Inferior colliculus rostral partcontraICOLR0.5
Rostrocaudal extent of the inferior colliculuscontraRCeICOL3
Ventrolateral cortex of the inferior colliculuscontraICOLvL0
Superior colliculuscontraSC3
Subcollicular centerscontraSCOLC-0.5
Tectal longitudinal columncontraTCL1
Caudal tectal longitudinal columncontraCTCL2
Rostral tectal longitudinal columncontraRTCL1
Ventrolateral tegmental areacontraVLTg-0.5
Medial trapezoid nucleuscontraMTz1
Ventral nucleus of the trapezoid bodycontraVNTB1
Cochlear systemcontraCOS-1
Cochlear nucleuscontraCON1
Dorsal part of the anteroventral cochlear nucleuscontraAVCOND3
Dorsal cochlear nucleuscontraDC3
Ventral cochlear nucleuscontraVC2
Rostral periolivary regioncontraRPO-0.5
Superior olivecontraSuOLi2
Lateral superior olivecontraLSO1
Superior paraolivary nucleuscontraSPO1
Caudal ventral medulla oblongatacontraCVMeO-0.5
Subparafascicular thalamic nucleuscontraSPF0
Subparafascicular thalamic nucleus caudal partcontraSPFc0.5
Ventral half of the lateral lemniscuscontrallvh-0.5
Central amygdaloid nucleuscontraCe1
Central amygdaloid nucleus dorsal partcontraCed1
Central amygdaloid nucleus ventral partcontraCeV1
Medial geniculate nucleuscontraMG2
Marginal zone of medial geniculate nucleuscontraMMG1
Medial geniculate nucleus dorsal partcontraMGD1
Spinal cord layers L1contraSCLL1-0.5
Spinal cord layers L2contraSCLL2-0.5

Input from

NameSideAbbr.WeightDetails
Central grayipsiCG2
Dorsal nucleus of the lateral lemniscusipsiDLL3
Intermediate nucleus of the lateral lemniscusipsiILL3
Ventral nucleus of the lateral lemniscusipsiVLL3
Sagulum nucleusipsiSag3
Posterior sagulum nucleusipsiSagP0
Nuclei of the lateral lemniscus caudal partipsiNLLC-0.5
Periaqueductal grayipsiPAG1
Lateral pontine tegmentumipsiLPTG-0.5
Inferior colliculusipsiICOL3
Brachium of the inferior colliculusipsibic3
Central nucleus of the inferior colliculusipsiCIC3
External cortex of the inferior colliculusipsiECIC0
External cortex of the inferior colliculus rostral partipsiECICr-0.5
Dorsal cortex of the inferior colliculusipsiDCIC-0.5
Inferior colliculus lateral partipsiICOLL0
Inferior colliculus lateral part layersipsiICOLLa-0.5
Intercollicular nucleusipsiInCo1
Superior colliculusipsiSC1
Commissure of the superior colliculusipsicsc-0.5
Most caudal part of the superior colliculusipsimcSC-0.5
Superior colliculus intermediate layersipsiSCi1
Superior colliculus deep layersipsiSCd2
Substantia nigra A9ipsiSN-0.5
Substantia nigra compact partipsiSNC0
Substantia nigra lateral partipsiSNL1
Substantia nigra reticular partipsiSNR0
Rostral midbrainipsiMECRo-0.5
Dorsal surface of the midbrainipsiDSMEC-0.5
Lateral midbrainipsiLMEC-0.5
Locus coeruleusipsiLC1
Medullary reticular nucleus dorsal partipsiMdDd1
Nucleus of the trapezoid bodyipsiTz1
Lateral nucleus of the trapezoid bodyipsiLNTB3
Rostrocaudal extent of the lateral nucleus of the trapezoid bodyipsiLNTBrc3
Medial trapezoid nucleusipsiMTz0
Ventral nucleus of the trapezoid bodyipsiVNTB3
Intermediate part of the ventral nucleus of the trapezoid bodyipsiVNTBim3
Rostrocaudal extent of the ventral nucleus of the trapezoid bodyipsiVNTBrc-0.5
Principal sensory trigeminal nucleusipsiPr50
Spinal trigeminal nucleusipsiSp5nc0
Cochlear nucleusipsiCON3
Anteroventral cochlear nucleusipsiAVCON3
Dorsal two-thirds of the anteroventral cochlear nucleusipsiAVCONdtt3
Rostral part of the anteroventral cochlear nucleusipsiAVCONrp1
Ventral one-third of the anteroventral cochlear nucleusipsiAVCONvot1.5
Ventral part of the anteroventral cochlear nucleusipsiAVCONv-0.5
Anteroventral cochlear nucleus spherical bushy cellsipsiAVCONsb0
Dorsal cochlear nucleusipsiDC3
Dorsal cochlear nucleus deep layeripsiDCdL1
Dorsal cochlear nucleus fusiform layeripsiDCFu1
Dorsal part of the posteroventral cochlear nucleusipsiPVCOND3
Intermediate part of the posteroventral cochlear nucleusipsiPVCONim3
Octopus cells of the posterior ventral cochlear nucleusipsiPVCONoc0
Ventral one-third of the posteroventral cochlear nucleusipsiPVCONvot1.5
Ventral cochlear nucleusipsiVC3
Ventral cochlear nucleus posterior partipsiVCP1
Ventral cochlear nucleus posterior part octopus cell areaipsiVCPO0
Ventral cochlear nucleus bushy cellipsiVCbc0
Ventral cochlear nucleus multipolar cellsipsiVCmuc1
Dorsal column nucleiipsiDCN0
Cuneate nucleus lateral partipsiCuLa0
Medial oliveipsiMON-0.5
Periolivary areaipsiPOA3
Dorsal periolivary regionipsiDPO2
Ventral portion of the medioventral periolivary nucleusipsiVMVPO3
Ventral part of the rostral zone of the periolivary regionipsiVRPO3
Superior periolivary nucleusipsiSPOA3
Ventral periolivary nucleusipsiVPOA1
Superior oliveipsiSuOLi3
Lateral superior oliveipsiLSO3
Lateral limb of the lateral superior oliveipsiLLLSO1
Medial part of the lateral superior oliveipsiMLSO3
Medial superior oliveipsiMSO3
Rostrocaudal extent of the medial superior olivary nucleusipsiMSOrc3
Superior olive rostrocaudal partipsiSuOLirc3
Superior olive dorsoventral partipsiSuOLidv3
Superior paraolivary nucleusipsiSPO3
Rostrocaudal extent of the superior paraolivary nucleusipsiSPOrc3
Superior paraolivary complex lateral partipsiSOCl3
Lateral limbs of the lateral superior olivary nucleusipsiSOClLL1
Rostrocaudal extent of the lateral superior olivary nucleusipsiSOClrc3
Superior paraolivary complex medial partipsiSOCm1.5
Dorsoventral extent of the medial superior olivary complexipsiSOCmdv2
Lateral hypothalamic areaipsiLH2
Lateral hypothalamic area perifornical partipsiPFx2
Dorsomedial hypothalamic nucleus [Medial zone]ipsiDM2
Dorsomedial hypothalamic nucleus dorsomedial partipsiDMDM2
Posterior hypothalamic areaipsiPHA2
Intermediate periventricular nucleus of the hypothalamusipsiPVi-1
Paraventricular nucleus anterior partipsiPaan-1
ThalamusipsiT0
Paraventricular thalamic nucleus posterior partipsiPVP-1
Subparafascicular thalamic nucleus magnocellular partipsiSPFm0.5
Subparafascicular thalamic nucleus parvicellular partipsiSPFp0.5
Zona incerta medial partipsiZIm-0.5
Posterior pretectal nucleusipsiPPT1
RetinaipsiRET1
Lateral lemniscusipsill-0.5
Dorsal commissure of the lateral lemniscusipsidcll-0.5
Ventral half of the lateral lemniscusipsillvh3
Medial lemniscusipsiml-2
Temporal association area 2ipsiTe21
Temporal association area 2 dorsal partipsiTe2D0
Temporal association area 3ipsiTe31
Temporal association cortex 1ipsiTeA1
Caudal one-third of temporal association cortex 1 deep layersipsiTecaotdL3
Deep gray matter of the temporal association cortex 1ipsiTeAdL3
Rostral half of temporal association cortex 1 deep layersipsiTeArhdL1.5
Temporal association cortex 1 rostral half deep layersipsiTeArohdL1.5
Temporal association cortex 1 rostral two thirds deep layersipsiTeArttdL1.5
Temporal cortex upper part of layer 5ipsiTELauL53
Temporal cortex middle part of layer 5ipsiTELamL53
Temporal cortex deeper part of layer 5ipsiTELadL51
Temporal cortex vicinity of layer 6ipsiTELavL61
Auditory regionsipsiAU3
Primary auditory cortexipsiAu11
Primary auditory cortex layer 5ipsiAu1L53
Medial geniculate nucleusipsiMG2
Medial geniculate nucleus caudal partipsiMGc-0.5
Dorsomedial part of the medial geniculate nucleus caudal partipsiMGcdm-0.5
Medial geniculate nucleus medial partipsiMGM-0.5
Medial geniculate nucleus ventral partipsiMGV2
Interpeduncular nucleusipsiIP-0.5
Olfactory tubercleipsiTuO1
Dorsal nucleus of the lateral lemniscuscontraDLL3
Lateral boundaries of the dorsal nucleus of the lateral lemniscuscontraDLLLb3
Dorsal boundaries of the dorsal nucleus of the lateral lemniscuscontraDLLdb3
Ventral boundaries of the dorsal nucleus of the lateral lemniscuscontraDLLvb3
Medial boundary of the dorsal nucleus of the lateral lemniscuscontraDLLmb3
Intermediate nucleus of the lateral lemniscuscontraILL2
Ventral nucleus of the lateral lemniscuscontraVLL2
Sagulum nucleuscontraSag3
Nuclei of the lateral lemniscus caudal partcontraNLLC-0.5
Nuclei of the lateral lemniscus lateral partcontraNLLL-0.5
Inferior colliculuscontraICOL3
Central nucleus of the inferior colliculuscontraCIC3
Dorsomedial part of the inferior colliculuscontraICOLDM3
Dorsal cortex of the inferior colliculuscontraDCIC3
Inferior colliculus lateral partcontraICOLL0
Inferior colliculus lateral part layerscontraICOLLa0
Superior colliculuscontraSC0
Locus coeruleuscontraLC1
Nucleus of the trapezoid bodycontraTz0.5
Lateral nucleus of the trapezoid bodycontraLNTB2
Rostrocaudal extent of the lateral nucleus of the trapezoid bodycontraLNTBrc3
Medial trapezoid nucleuscontraMTz0
Ventral nucleus of the trapezoid bodycontraVNTB2
Principal sensory trigeminal nucleuscontraPr50
Cochlear nucleuscontraCON2
Anteroventral cochlear nucleuscontraAVCON3
Dorsal part of the anteroventral cochlear nucleuscontraAVCOND3
Ventral part of the anteroventral cochlear nucleuscontraAVCONv-0.5
Anteroventral cochlear nucleus spherical bushy cellscontraAVCONsb0
Dorsal cochlear nucleuscontraDC3
Dorsal cochlear nucleus deep layercontraDCdL3
Dorsal cochlear nucleus fusiform layercontraDCFu3
Dorsal cochlear nucleus superficial layercontraDCNsL0
Dorsal cochlear nucleus superficial layer fusiform cellscontraDCNsLF0.5
Ventral cochlear nucleuscontraVC3
Ventral cochlear nucleus posterior partcontraVCP3
Ventral cochlear nucleus posterior part octopus cell areacontraVCPO0
Ventral cochlear nucleus bushy cellcontraVCbc0
Ventral cochlear nucleus multipolar cellscontraVCmuc3
Dorsal column nucleicontraDCN0
Cuneate nucleuscontraCu1
GracilecontraGra1.5
Dorsomedial olivary regioncontraDMON-0.5
Periolivary areacontraPOA2
Dorsal periolivary regioncontraDPO0.5
Ventral portion of the medioventral periolivary nucleuscontraVMVPO3
Ventral part of the rostral zone of the periolivary regioncontraVRPO3
Superior periolivary nucleuscontraSPOA1.5
Ventral periolivary nucleuscontraVPOA0.5
Superior olivecontraSuOLi3
Lateral superior olivecontraLSO3
Lateral limb of the lateral superior olivecontraLLLSO3
Medial part of the lateral superior olivecontraMLSO1
Medial superior olivecontraMSO0.5
Superior olive rostrocaudal partcontraSuOLirc1
Superior olive dorsoventral partcontraSuOLidv1
Superior paraolivary nucleuscontraSPO3
Superior paraolivary complex lateral partcontraSOCl3
Lateral limbs of the lateral superior olivary nucleuscontraSOClLL1
Rostrocaudal extent of the lateral superior olivary nucleuscontraSOClrc3
Superior paraolivary complex medial partcontraSOCm1.5
Lateral hypothalamic area perifornical partcontraPFx-0.5
ThalamuscontraT0
Subparafascicular thalamic nucleus magnocellular partcontraSPFm1
Subparafascicular thalamic nucleus parvicellular partcontraSPFp1
Zona incerta medial partcontraZIm-0.5
Lateral lemniscuscontrall-0.5
Temporal association area 2contraTe20
Temporal association area 3contraTe30
Temporal association cortex 1contraTeA0
Caudal one-third of temporal association cortex 1 deep layerscontraTecaotdL2
Deep gray matter of the temporal association cortex 1contraTeAdL2
Rostral half of temporal association cortex 1 deep layerscontraTeArhdL1
Temporal association cortex 1 rostral half deep layerscontraTeArohdL1
Temporal association cortex 1 rostral two thirds deep layerscontraTeArttdL1
Auditory regionscontraAU2
Primary auditory cortex layer 5contraAu1L50
Lateral cervical nucleuscontraLatC3
Spinal cord layer 3 C1contraSCL3C13
Spinal cord layer 4 C1contraSCL4C13
Spinal cord layer 1 C1contraSCL1C13
Spinal cord layer 2 C1contraSCL2C13
Spinal cord layer 3 C2contraSCL3C23
Spinal cord layer 4 C2contraSCL4C23
Spinal cord layer 1 C2contraSCL1C23
Spinal cord layer 2 C2contraSCL2C23

Key for weights

ValueWeight
-3 unknown
-2 fibers of passage
-1 not clear
-0.5 exists
0 not present
0.5 very light
1 light / sparse
1.5 light / moderate
2 moderate / dense
2.5 moderate / strong
3 strong
4 very strong





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