University of Rostock

Department of Anatomy

Neuroscience Group

 Homepage

 Staff

 neuroVIISAS

 Rat connectome

 Other connectomes

 Neuroimaging

 Neurodegeneration

 Neuroproteomics

 Students

 Links

 Publications

Rat connectome



Primary somatosensory cortex trunk region left


Abbreviation
S1Tr
Color       
Superior regionsPrimary somatosensory cortex nonorofascial part

SynonymsAbbr.Language
Primary somatosensory cortex trunk regionSSp-trEng
Primary somatosensory cortex trunk regionS1TrEng
Trunk region of primary somatosensory cortex Eng

SubregionsSide
Primary somatosensory cortex midtrunk regionleft
Caudomedial area to the primary somatosensory cortex trunk regionleft
Primary somatosensory cortex trunk region layersleft
Primary somatosensory cortex lower trunk regionleft

Output to

NameSideAbbr.WeightDetails
Intermediate gray layer of the superior colliculusipsiInG0
Superior colliculus medial partipsimSC1
Pontine nucleiipsiPn-0.5
Pontine nuclei dorsal partipsiDBPn-0.5
Pontine nuclei lateral partipsiBPNL-0.5
Pontine nuclei rostral caudal zones rostral part 5ipsiPnRRL53
Dorsoventral dimension of the rostral zone of the pontine nucleiipsiBPNrdv-0.5
Midline region of the medial pontine nucleusipsiMiBPNm-0.5
Parietal rhinal cortexipsiPaRH-0.5
Lateral parietal association cortexipsiLPtA3
Medial parietal association cortexipsiMPtA-0.5
Lateral agranular prefrontal cortexipsiAGl-0.5
Rostral forelimb motor areaipsiRFMA-0.5
Hindlimb motor cortex caudal partipsiHMCxC-0.5
Rostral whisker motor areaipsiRWMA-0.5
Trunk region of the lateral agranular frontal cortexipsiAGlt-0.5
Anterior part of trunk zone of medial agranular prefrontal cortex layer 1ipsiAGmtaL11.5
Anterior part of trunk zone of medial agranular prefrontal cortex layer 2ipsiAGmtaL21.5
Anterior part of trunk zone of medial agranular prefrontal cortex layer 3ipsiAGmtaL31.5
Anterior part of trunk zone of medial agranular prefrontal cortex layer 4ipsiAGmtaL42
Anterior part of trunk zone of medial agranular prefrontal cortex layer 5ipsiAGmtaL53
Anterior part of trunk zone of medial agranular prefrontal cortex layer 6ipsiAGmtaL63
Anterior part of trunk zone of medial agranular prefrontal cortex layer 6bipsiAGmtaL6b0
Medial posterior part of trunk zone of lateral agranular prefrontal cortex layer 1ipsiAGlmptL11.5
Medial posterior part of trunk zone of lateral agranular prefrontal cortex layer 2ipsiAGlmptL21.5
Medial posterior part of trunk zone of lateral agranular prefrontal cortex layer 3ipsiAGlmptL31.5
Medial posterior part of trunk zone of lateral agranular prefrontal cortex layer 4ipsiAGlmptL42
Medial posterior part of trunk zone of lateral agranular prefrontal cortex layer 5ipsiAGlmptL53
Medial posterior part of trunk zone of lateral agranular prefrontal cortex layer 6ipsiAGlmptL63
Medial posterior part of trunk zone of lateral agranular prefrontal cortex layer 6bipsiAGlmptL6b0
Medial prefrontal cortex layer 5ipsimPFCL53
Medial prefrontal cortex layer 6ipsimPFCL63
Medial prefrontal cortex layer 3ipsimPFCL33
Medial prefrontal cortex layer 4ipsimPFCL43
Medial agranular prefrontal cortexipsiAGm-0.5
Medial agranular prefrontal cortex trunk zoneipsiAGmTZ-0.5
Primary somatosensory cortex lower lip regionipsiS1LL-0.5
Primary somatosensory cortex lower lip region layer 1ipsiS1LL11
Primary somatosensory cortex lower lip region layer 2ipsiS1LL21
Primary somatosensory cortex lower lip region layer 3ipsiS1LL31
Primary somatosensory cortex lower lip region layer 4ipsiS1LL41
Primary somatosensory cortex lower lip region layer 5ipsiS1LL51
Primary somatosensory cortex lower lip region layer 6ipsiS1LL61
Primary somatosensory cortex upper lip regionipsiS1ULp-0.5
Primary somatosensory cortex upper lip region layer 1ipsiS1ULpL11
Primary somatosensory cortex upper lip region layer 2ipsiS1ULpL21
Primary somatosensory cortex upper lip region layer 3ipsiS1ULpL31
Primary somatosensory cortex upper lip region layer 4ipsiS1ULpL41
Primary somatosensory cortex upper lip region layer 5ipsiS1ULpL51
Primary somatosensory cortex upper lip region layer 6ipsiS1ULpL61
Primary somatosensory cortex medial intercalated zoneipsiS1iZm3
Primary somatosensory cortex forelimb regionipsiS1FL-0.5
Primary somatosensory cortex distal forelimb regionipsiS1FLD-0.5
Primary somatosensory cortex distal forelimb region layer 1ipsiS1FLDiL11
Primary somatosensory cortex distal forelimb region layer 2ipsiS1FLDiL21
Primary somatosensory cortex distal forelimb region layer 3ipsiS1FLDiL31
Primary somatosensory cortex distal forelimb region layer 4ipsiS1FLDiL41
Primary somatosensory cortex distal forelimb region layer 5ipsiS1FLDiL51
Primary somatosensory cortex distal forelimb region layer 6ipsiS1FLDiL61
Primary somatosensory cortex hindlimb leg regionipsiS1HLLe-0.5
Primary somatosensory cortex hindlimb toe regionipsiS1HLT-0.5
Primary somatosensory cortex distal hindlimb regionipsiS1HLD-0.5
Caudomedial area to the primary somatosensory cortex trunk regionipsiS1Trcm2
Primary somatosensory cortex perigranular zoneipsiS1PZ3
Secondary somatosensory cortexipsiS23
Most caudal callosal free zone of secondary somatosensory cortexipsiS2Ccf-0.5
Secondary somatosensory cortex close to the S1/S2 borderipsiS2brs1s21.5
Secondary somatosensory cortex caudomedial partipsiS2cm3
Intermediate gray layer of the superior colliculuscontraInG0
Superior colliculus medial partcontramSC0
Medial prefrontal cortex layer 5contramPFCL51.5
Medial prefrontal cortex layer 6contramPFCL61.5
Medial prefrontal cortex layer 3contramPFCL31.5
Medial prefrontal cortex layer 4contramPFCL41.5
Primary somatosensory cortex trunk regioncontraS1Tr3
Caudomedial area to the primary somatosensory cortex trunk regioncontraS1Trcm-0.5
Secondary somatosensory cortexcontraS2-0.5
Secondary somatosensory cortex close to the S1/S2 bordercontraS2brs1s2-0.5
Secondary somatosensory cortex caudomedial partcontraS2cm-0.5
Lumbar segmentscontraLSeg-0.5

Input from

NameSideAbbr.WeightDetails
Central medial thalamic nucleusipsiCM2
Centrolateral thalamic nucleusipsiCL2
Paracentral thalamic nucleusipsiPC2
Posterior thalamic nuclear groupipsiPo-0.5
Mediodorsal part of posterior thalamic nuclear groupipsiPomd2
Ventro anterior thalamic nucleusipsiVA2
Ventrolateral thalamic nucleusipsiVL2
Ventral posterolateral thalamic nucleusipsiVPL2
Lateral posterior thalamic nucleusipsiLP1
Laterodorsal thalamic nucleusipsiLD1
Internal capsuleipsiic-0.5
Parietal rhinal cortexipsiPaRH-0.5
Lateral parietal association cortexipsiLPtA3
Medial parietal association cortexipsiMPtA-0.5
Dorsal primary auditory cortexipsiAu1D-0.5
Lateral agranular prefrontal cortexipsiAGl-0.5
Trunk region of the lateral agranular frontal cortexipsiAGlt-0.5
Anterior part of trunk zone of medial agranular prefrontal cortex layer 2ipsiAGmtaL21.5
Anterior part of trunk zone of medial agranular prefrontal cortex layer 3ipsiAGmtaL31.5
Anterior part of trunk zone of medial agranular prefrontal cortex layer 4ipsiAGmtaL42
Anterior part of trunk zone of medial agranular prefrontal cortex layer 5ipsiAGmtaL53
Anterior part of trunk zone of medial agranular prefrontal cortex layer 6aipsiAGmtaL6a3
Medial posterior part of trunk zone of lateral agranular prefrontal cortex layer 2ipsiAGlmptL21.5
Medial posterior part of trunk zone of lateral agranular prefrontal cortex layer 3ipsiAGlmptL31.5
Medial posterior part of trunk zone of lateral agranular prefrontal cortex layer 4ipsiAGlmptL42
Medial posterior part of trunk zone of lateral agranular prefrontal cortex layer 5ipsiAGlmptL53
Medial posterior part of trunk zone of lateral agranular prefrontal cortex layer 6aipsiAGlmptL6a3
Medial agranular prefrontal cortexipsiAGm-0.5
Medial agranular prefrontal cortex trunk zoneipsiAGmTZ-0.5
Primary somatosensory cortex lower lip regionipsiS1LL-0.5
Primary somatosensory cortex lower lip region layer 2ipsiS1LL21
Primary somatosensory cortex lower lip region layer 3ipsiS1LL31
Primary somatosensory cortex lower lip region layer 4ipsiS1LL40.5
Primary somatosensory cortex lower lip region layer 5ipsiS1LL50.5
Primary somatosensory cortex lower lip region layer 6ipsiS1LL60.5
Primary somatosensory cortex upper lip regionipsiS1ULp-0.5
Primary somatosensory cortex upper lip region layer 2ipsiS1ULpL21
Primary somatosensory cortex upper lip region layer 3ipsiS1ULpL31
Primary somatosensory cortex upper lip region layer 4ipsiS1ULpL40.5
Primary somatosensory cortex upper lip region layer 5ipsiS1ULpL50.5
Primary somatosensory cortex upper lip region layer 6ipsiS1ULpL60.5
Primary somatosensory cortex medial intercalated zoneipsiS1iZm3
Primary somatosensory cortex forelimb regionipsiS1FL-0.5
Primary somatosensory cortex distal forelimb regionipsiS1FLD-0.5
Primary somatosensory cortex distal forelimb region layer 2ipsiS1FLDiL21
Primary somatosensory cortex distal forelimb region layer 3ipsiS1FLDiL31
Primary somatosensory cortex distal forelimb region layer 4ipsiS1FLDiL40.5
Primary somatosensory cortex distal forelimb region layer 5ipsiS1FLDiL50.5
Primary somatosensory cortex distal forelimb region layer 6ipsiS1FLDiL60.5
Primary somatosensory cortex hindlimb leg regionipsiS1HLLe-0.5
Primary somatosensory cortex hindlimb toe regionipsiS1HLT-0.5
Primary somatosensory cortex distal hindlimb regionipsiS1HLD-0.5
Primary somatosensory cortex perigranular zoneipsiS1PZ3
Secondary somatosensory cortexipsiS23
Most caudal callosal free zone of secondary somatosensory cortexipsiS2Ccf-0.5
Secondary somatosensory cortex close to the S1/S2 borderipsiS2brs1s21.5
Secondary somatosensory cortex caudomedial partipsiS2cm3
Primary visual cortexipsiV11
Primary somatosensory cortex trunk regioncontraS1Tr3
Secondary somatosensory cortexcontraS2-0.5
Secondary somatosensory cortex close to the S1/S2 bordercontraS2brs1s2-0.5
Secondary somatosensory cortex caudomedial partcontraS2cm-0.5

Key for weights

ValueWeight
-3 unknown
-2 fibers of passage
-1 not clear
-0.5 exists
0 not present
0.5 very light
1 light / sparse
1.5 light / moderate
2 moderate / dense
2.5 moderate / strong
3 strong
4 very strong





Homepage | Staff | neuroVIISAS | Rat connectome | Other connectomes | Neuroimaging | Neurodegeneration | Students | Links | Publications