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Rat connectome



Superior colliculus medial part left


Abbreviation
mSC
Color       
Superior regionsSuperior colliculus

SynonymsAbbr.Language
Superior colliculus medial partSCmEng
Medial superior colliculus Eng
Superior colliculus medial partmSC 

SubregionsSide
Anterior two thirds of the superior colliculus medial partleft
Posterior part of the superior colliculus medial partleft
Superior colliculus medial boundaryleft
Superior colliculus medial halfleft
Superior colliculus medial part layersleft
Superior colliculus medialmost edgeleft
Superior colliculus medial thirdleft

Output to

NameSideAbbr.WeightDetails
Periaqueductal grayipsiPAG-2
Border of the cerebral peduncleipsiBPePo-0.5
Pontine nuclei dorsal partipsiDBPn-0.5
Lateral reticular nucleusipsiLRt3
Facial nucleus intermediate partipsi7i1
Facial nucleus dorsal intermediate subnucleusipsi7DI1
Mesencephalic trigeminal nucleusipsiMe50.5
Trigeminal sensory nuclear complexipsiTSNC3
Principal sensory trigeminal nucleusipsiPr5-0.5
Principal sensory trigeminal nucleus ventromedial partipsiPr5vm-0.5
Spinal trigeminal nucleus caudal partipsiSp5C0
Spinal trigeminal nucleus interpolar partipsiSp5I1
Spinal trigeminal nucleus interpolar part caudalipsiSp5Ic0
Spinal trigeminal nucleus interpolar part medial partipsiSp5IM1
Spinal trigeminal nucleus oral partipsiSp5O-0.5
Dorsal part of spinal trigeminal nucleus oral partipsiSp5OD-0.5
Spinal trigeminal nucleus oral part central partipsiSp5OC-0.5
Spinal trigeminal nucleus rostral partipsiSp5ncR0
Central medial thalamic nucleusipsiCM1.5
Centrolateral thalamic nucleusipsiCL2
Paracentral thalamic nucleusipsiPC1
Parafascicular thalamic nucleus lateral partipsiPFL2
Parafascicular thalamic nucleus medial partipsiPFM2
Rhomboid thalamic nucleusipsiRh1
Submedius thalamic nucleusipsiSub0.5
Paraventricular thalamic nucleus anterior partipsiPVA2
Paraventricular thalamic nucleus middle divisionipsiPVMiD1
Paraventricular thalamic nucleus posterior partipsiPVP2
Reuniens thalamic nucleusipsiRe1
Zona incertaipsiZI0.5
Zona incerta ventral part lateral partipsiZIVL-0.5
Subthalamic nucleusipsiSTh0.5
Superior colliculus medial partcontramSC2
Facial nucleus intermediate partcontra7i2
Facial nucleus dorsal intermediate subnucleuscontra7DI2
Mesencephalic trigeminal nucleuscontraMe50.5
Trigeminal sensory nuclear complexcontraTSNC1
Central medial thalamic nucleuscontraCM1
Centrolateral thalamic nucleuscontraCL1
Paracentral thalamic nucleuscontraPC0.5
Parafascicular thalamic nucleus lateral partcontraPFL1
Parafascicular thalamic nucleus medial partcontraPFM1
Rhomboid thalamic nucleuscontraRh1
Submedius thalamic nucleuscontraSub0.5
Paraventricular thalamic nucleus anterior partcontraPVA1.5
Paraventricular thalamic nucleus middle divisioncontraPVMiD1
Paraventricular thalamic nucleus posterior partcontraPVP1.5
Reuniens thalamic nucleuscontraRe1

Input from

NameSideAbbr.WeightDetails
Sagulum nucleusipsiSag2
Nuclei of the lateral lemniscus dorsal partipsiNLLD1
Nuclei of the lateral lemniscus ventral partipsiNLLV1
Dorsolateral periaqueductal gray caudal partipsiPAGdlc1
Dorsolateral periaqueductal gray intermediate partipsiDLPAGim1
Dorsolateral periaqueductal gray rostral partipsiPAGdlr1
Lateral periaqueductal gray caudalipsiLPAGC1
Lateral periaqueductal gray intermediateipsiLPAGim1
Lateral periaqueductal gray rostral partipsiLPAGR1
Brachium of the inferior colliculusipsibic-2
Superior colliculus intermediate layersipsiSCi1
Peduncularpontine nucleusipsiPPN2
Substantia nigra reticular partipsiSNR3
Substantia nigra reticular part dorsolateral tieripsiSNRDL0
Substantia nigra reticular part ventromedial tieripsiSNRVM2
Laterodorsal tegmental nucleusipsiLDTg1
Lateral cerebellar nucleusipsiCERL0
Locus coeruleusipsiLC2
Nucleus incertusipsiNI0
Intermediate reticular nucleusipsiIRt1
Medial reticular formationipsiRFm1
Mesopontine reticular formationipsiMPRF2
Mesencephalic reticular formationipsiMRF1
Pontine reticular nucleusipsiPRN2
Cuneiforme nucleusipsiCnF2
Lateral parabrachial nucleusipsiLPB1
Parabrachial nucleus medialipsiPBnMe0
Gigantocellular reticular nucleus rostral partipsiGiRo1
Lateral reticular nucleus ventral partipsiLRtV1
Medullary reticular nucleusipsiMdD1
Caudal medullary reticular formationipsiCMdD-0.5
Medullary reticular nucleus dorsal partipsiMdDd3
Parvicellular reticular nucleusipsiPCRt3
Supragenual nucleusipsiSGe0
Motor trigeminal nucleusipsiMo52
Principal sensory trigeminal nucleus medial partipsiPr5me0
Principal sensory trigeminal nucleus ventral partipsiPr5v0
Spinal trigeminal nucleusipsiSp5nc0
Dorsal column nucleiipsiDCN1
Olivary pretectal nucleusipsiOPT1
Lateral hypothalamic areaipsiLH1
Ventromedial hypothalamic nucleusipsiVMH2
Premammillary nucleus dorsal partipsiPMD3
Suprageniculate thalamic nucleusipsiSG1
Lateral posterior thalamic nucleusipsiLP1
Zona incerta ventral caudolateral partipsiZIVCL1
Zona incerta ventral caudomedial partipsiZIVCM0
Zona incerta ventral rostrolateral partipsiZIVRL2
Zona incerta ventral rostromedial partipsiZIVRM0
Anterior pretectal nucleus dorsal partipsiAPTD1
Medial pretectal nucleusipsiMPT1
RetinaipsiRET1
Retina inferior partipsiRETi-0.5
Medial globus pallidusipsiMGP1
PostsubiculumipsiPost1
Retrosplenial cortex rostrocaudalipsiRSrc-0.5
Retrosplenial granular cortexipsiRSGra2
Anterior cingulate cortex caudal partipsiACCc0
Anterior cingulate cortex rostral partipsiACCr1
Prelimbic cortexipsiPrL1
Infralimbic cortexipsiIL1
Parietal association cortexipsiPtA1
Temporal cortexipsiTE2
Auditory regionsipsiAU1
Agranular insular cortexipsiAI0
Visceral dysgranular insular cortexipsiDIv0
Granular insular cortexipsiGI0
Ectorhinal cortexipsiA361
Caudal part of lateral agranular prefrontal cortexipsiAGlc1
Lateral agranular prefrontal cortex rostral partipsiAGlR0
Medial agranular prefrontal cortex caudal partipsicAGm1
Medial agranular prefrontal cortex rostral partipsirAGm0
Posteromedial barrel subfield C2 caudal partipsiPMBSFC2c3
Posteromedial barrel subfield D1 caudal partipsiPMBSFD1c3
Posteromedial barrel subfield D2 caudal partipsiPMBSFD2c3
Posteromedial barrel subfield D5 caudal partipsiPMBSFD5c3
Caudal whisker areaipsiCS1BF1
Rostral whisker areaipsiRS1BF0
Primary somatosensory cortex oral dysgranular regionipsiS1DZO0
Primary somatosensory cortex dysgranular region caudal partipsiS1DZc1
Primary somatosensory cortex nose regionipsiS1NR0
Primary somatosensory cortex forelimb regionipsiS1FL0
Primary somatosensory cortex hindlimb regionipsiS1HL1
Primary somatosensory cortex trunk regionipsiS1Tr1
Supplemental somatosensory area rostral partipsiSSsr0
Supplemental somatosensory area caudal partipsiSSsc1
Visual regionsipsiVR2
Primary visual cortex layer 5ipsiV1L53
Secondary visual cortexipsiV2-0.5
Secondary visual cortex layer 5ipsiV2L53
Secondary visual cortex lateral area layer 5ipsiV2LL53
Primary visual cortex medial part layer 5ipsiV1meL52
Nucleus of the posterior commissure rostral partipsiPComR1
Nucleus of the posterior commissure caudal partipsiPComC0
Precommissural nucleusipsiPrC2
Ventral lateral geniculate nucleusipsiVLG4
Cervical segments rostral partipsiCSegR2
Sagulum nucleuscontraSag1
Nuclei of the lateral lemniscus dorsal partcontraNLLD2
Nuclei of the lateral lemniscus ventral partcontraNLLV2
Dorsolateral periaqueductal gray caudal partcontraPAGdlc1
Dorsolateral periaqueductal gray rostral partcontraPAGdlr1
Dorsolateral periaqueductal gray intermediate partcontraDLPAGim1
Lateral periaqueductal gray rostral partcontraLPAGR1
Lateral periaqueductal gray intermediatecontraLPAGim1
Lateral periaqueductal gray caudalcontraLPAGC1
Superior colliculus intermediate layerscontraSCi1
Superior colliculus medial partcontramSC2
Peduncularpontine nucleuscontraPPN1
Substantia nigra reticular part dorsolateral tiercontraSNRDL0
Substantia nigra reticular part ventromedial tiercontraSNRVM0
Laterodorsal tegmental nucleuscontraLDTg1
Lateral cerebellar nucleuscontraCERL1
Locus coeruleuscontraLC2
Nucleus incertuscontraNI2
Intermediate reticular nucleuscontraIRt1.5
Medial reticular formationcontraRFm1.5
Mesopontine reticular formationcontraMPRF3
Mesencephalic reticular formationcontraMRF0
Pontine reticular nucleuscontraPRN3
Cuneiforme nucleuscontraCnF1
Lateral parabrachial nucleuscontraLPB1
Parabrachial nucleus medialcontraPBnMe0
Medullary reticular nucleuscontraMdD1.5
Medullary reticular nucleus dorsal partcontraMdDd4
Parvicellular reticular nucleuscontraPCRt4
Supragenual nucleuscontraSGe4
Motor trigeminal nucleuscontraMo53
Principal sensory trigeminal nucleus medial partcontraPr5me1
Principal sensory trigeminal nucleus ventral partcontraPr5v1
Spinal trigeminal nucleuscontraSp5nc1
Spinal trigeminal nucleus interpolar partcontraSp5I1
Trigeminal subnucleus caudaliscontra5SSC1
Cuneate nucleuscontraCu3
Gracile nucleus principal partcontraGr3
Olivary pretectal nucleuscontraOPT1
Lateral hypothalamic areacontraLH0
Ventromedial hypothalamic nucleuscontraVMH2
Premammillary nucleus dorsal partcontraPMD0
Suprageniculate thalamic nucleuscontraSG0
Lateral posterior thalamic nucleuscontraLP0
Zona incerta ventral rostrolateral partcontraZIVRL0
Zona incerta ventral caudolateral partcontraZIVCL0
Zona incerta ventral rostromedial partcontraZIVRM0
Zona incerta ventral caudomedial partcontraZIVCM0
Anterior pretectal nucleus dorsal partcontraAPTD1
Medial pretectal nucleuscontraMPT1
PostsubiculumcontraPost0
Retrosplenial granular cortexcontraRSGra0
Anterior cingulate cortex caudal partcontraACCc0
Anterior cingulate cortex rostral partcontraACCr0
Prelimbic cortexcontraPrL0
Infralimbic cortexcontraIL0
Parietal association cortexcontraPtA0
Temporal cortexcontraTE0
Auditory regionscontraAU0
Agranular insular cortexcontraAI0
Visceral dysgranular insular cortexcontraDIv0
Granular insular cortexcontraGI0
Ectorhinal cortexcontraA360
Caudal part of lateral agranular prefrontal cortexcontraAGlc0
Lateral agranular prefrontal cortex rostral partcontraAGlR0
Medial agranular prefrontal cortex caudal partcontracAGm0
Medial agranular prefrontal cortex rostral partcontrarAGm0
Caudal whisker areacontraCS1BF0
Rostral whisker areacontraRS1BF0
Primary somatosensory cortex oral dysgranular regioncontraS1DZO0
Primary somatosensory cortex dysgranular region caudal partcontraS1DZc0
Primary somatosensory cortex nose regioncontraS1NR0
Primary somatosensory cortex forelimb regioncontraS1FL0
Primary somatosensory cortex hindlimb regioncontraS1HL0
Primary somatosensory cortex trunk regioncontraS1Tr0
Supplemental somatosensory area rostral partcontraSSsr0
Supplemental somatosensory area caudal partcontraSSsc0
Visual regionscontraVR0
Nucleus of the posterior commissure rostral partcontraPComR1
Nucleus of the posterior commissure caudal partcontraPComC0
Precommissural nucleuscontraPrC1
Ventral lateral geniculate nucleuscontraVLG1
Cervical segments rostral partcontraCSegR3
Facial nerveipsi7fn2
Facial nervecontra7fn3

Key for weights

ValueWeight
-3 unknown
-2 fibers of passage
-1 not clear
-0.5 exists
0 not present
0.5 very light
1 light / sparse
1.5 light / moderate
2 moderate / dense
2.5 moderate / strong
3 strong
4 very strong





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