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Rat connectome



Primary somatosensory cortex forelimb region left


Abbreviation
S1FL
Color       
Superior regionsPrimary somatosensory cortex nonorofascial part

SynonymsAbbr.Language
Primary somatosensory cortex forelimb regionS1FLEng
 FL 
Primary somatosensory cortex upper limbSSp-ulEng
Primary somatosensory cortex forearm regionS1FLEng
Primary somatosensory cortex arm regionS1FLEng
Forelimb sensory cortex  

SubregionsSide
Primary somatosensory cortex forelimb region anterior partleft
Primary somatosensory cortex forelimb region lateral partleft
Primary somatosensory cortex forelimb region layersleft
Primary somatosensory cortex forelimb region forepawleft
Primary somatosensory cortex forelimb digit regionleft
Primary somatosensory cortex distal forelimb regionleft
Primary somatosensory cortex proximal forelimb regionleft
Primary somatosensory cortex forepaw lower jaw border regionleft
Primary somatosensory cortex forelimb stump representationleft
Primary somatosensory cortex forelimb region rostral partleft
Intermediate region of the primary somatosensory cortex forelimb regionleft
Leg region of the primary somatosensory cortexleft
Primary somatosensory cortex forelimb region posterior partleft
Forepaw barrel subfieldleft
Primary somatosensory cortex forelimb wrist regionleft

Output to

NameSideAbbr.WeightDetails
Anteroposterior extension of the central gray mesencephalic partipsiCGMap2
Between anterior end of dorsal raphe and posterior ventral tegmental nucleus of the central gray mesencephalic partipsiCGMdrvtg2
Central region of medial pontine nucleusipsiCeMPoN3
Red nucleusipsiR-0.5
Red nucleus magnocellular part rostral sectoripsiRMCro-0.5
Red nucleus parvicellular partipsiROC-0.5
Optic nerve layer of the superior colliculusipsiOp0
Superficial gray layer of the superior colliculusipsiSuG0
Superior colliculus zonal layeripsiSCzo0
Intermediate gray layer of the superior colliculusipsiInG0
Intermediate gray layer of the posterolateral of the superior colliculus between face and hindlimb projection areaipsiInGPLbfh1.5
Deep gray layer of the superior colliculusipsiDpG-0.5
Deep gray layer of the posterolateral superior colliculus between the face and hindlimb projection areaipsiDpPLGbfh0.5
Superior colliculus medial partipsimSC0
Superior colliculus medial boundaryipsimbSC0
Tegmental areaipsiTGA-2
Dorsal peduncular pontine nucleusipsiDPPn1
CulmenipsiCUL1
Caudal part of cerebellumipsiCERCca2
Deep cerebellar nucleiipsiDNC2.5
FlocculusipsiFl1
PonsipsiP2
Lateral pontine nucleusipsiLPn3
Rostral level of lateral pontine nucleusipsiLPnR1.5
Caudal pons medial groupipsiPcaM-0.5
Lateral nuclear groups of the caudal ponsipsiPcaL-0.5
Caudal pons dorsal partipsiPcaDo-0.5
Midline region of the pontine grayipsiMiPG1
Pontine gray rostral partipsiPGro2.5
Extreme rostral pontine grayipsiPGero0
Ventral pontine grayipsiVPG-0.5
Pontine nucleiipsiPn3
Pontine nuclei medial lateral zones lateral part 5ipsiPnMLL51
Pontine nuclei rostral caudal zones caudal part 5ipsiPnRCCL53
Pontine nuclei rostromedial partipsiBPNrm-0.5
Pontine nucleus medial partipsiBPNm-0.5
Pontine nucleus ventral partipsiBPNv2.5
Rostral level of ventral pontine nucleusipsiBPNrv1.5
Spinal vestibular nucleusipsiSpVe1.5
Spinal vestibular nucleus rostral partipsiSpVeR-1
Medial vestibular nucleusipsiMVe1.5
Medial vestibular nucleus caudal partipsiMVeP1.5
Medial vestibular nucleus ventral partipsiMVeV1.5
Lateral vestibular nucleusipsiLVe1.5
Nucleus XipsiX1.5
Inferior oliveipsiIO3
Medial two thirds of the dorsal accessory olive at mid oliveipsiIODmmtt4
Inferior olive medial nucleus caudal partipsiIOMc2
Inferior olive beta subnucleusipsiIOBe2
Inferior olive subnucleus C of medial nucleusipsiIOC2
Inferior olive principal nucleus ventral leafipsiIOPrvl2
Centrolateral thalamic nucleusipsiCL-0.5
Parafascicular thalamic nucleusipsiPF-0.5
Posterior thalamic nuclear groupipsiPo-0.5
Ventral part of the medial part of posterior thalamic nuclear groupipsiPoMV-0.5
Ventrolateral thalamic nucleusipsiVL2
Ventrobasal complexipsiVB2
Ventral posterolateral thalamic nucleusipsiVPL3
Ventrobasal complex medial partipsiVBM-0.5
Intralaminar nucleiipsiILN-0.5
Reticular thalamic nucleusipsiRt-0.5
Zona incerta ventral partipsiZIV-0.5
Anterior pretectal nucleusipsiAPT-0.5
Cerebral peduncle basal partipsicp-2
Central portion of crus cerebriipsicepcp-2
StriatumipsiSTR-0.5
Caudate putamenipsiCPu2
Medial striatumipsiCPum2
Dorsocentral striatumipsiDCS1
Dorsolateral striatumipsiCPudl2
Rostral striatum dorsolateral partipsiCPurDL-0.5
Cerebral cortexipsiCEC3
Parietal rhinal cortexipsiPaRH-0.5
Cerebral cortex layer 4ipsiCCL43
Cerebral cortex layer 1ipsiCCL13
Cerebral cortex layer 2ipsiCCL23
Cerebral cortex layer 3ipsiCCL33
Cerebral cortex layer 5ipsiCCL52
Cerebral cortex layer 6ipsiCCL62
Cingulate cortex area 1 caudal partipsiCg1c0
Cingulate cortex area 2 caudal partipsiCg2c0
Prelimbic cortexipsiPrL0
Infralimbic cortexipsiIL0
Frontal association cortexipsiFrA-0.5
Lateral parietal association cortexipsiLPtA-0.5
Medial parietal association cortexipsiMPtA-0.5
Parietal cortex ventral area layer 5ipsiParVL53
Parietal cortex ventral area layer 6ipsiParVL63
Parietal cortex ventral area layer 4ipsiParVL42.5
Parietal cortex ventral area layer 1ipsiParVL11.5
Parietal cortex ventral area layer 2ipsiParVL21.5
Parietal cortex ventral area layer 3ipsiParVL32.5
Lateral agranular prefrontal cortexipsiAGl3
Elbow flexion motor cortexipsiEFMCx1
Rostral forelimb motor areaipsiRFMA2
Ankle dorsiflexion motor cortexipsiADFMCx2
Ankle plantar flexion motor cortexipsiAPFMCx1
Hip flexion motor cortexipsiHFMCx1
Medial agranular prefrontal cortexipsiAGm1
Primary somatosensory cortex barrel fieldipsiS1BF-0.5
Primary somatosensory cortex intercalated zoneipsiS1iZ1
Primary somatosensory cortex central intercalated zoneipsiS1iZce3
Primary somatosensory cortex medial part of the central intercalated zoneipsiS1iZMce-0.5
Primary somatosensory cortex lateral intercalated zoneipsiS1iZL3
Primary somatosensory cortex layer 3ipsiS1L32
Primary somatosensory cortex forelimb region forepawipsiS1FP-0.5
Primary somatosensory cortex forelimb region forepaw layer 1ipsiS1FPL13
Primary somatosensory cortex forelimb region forepaw layer 2ipsiS1FPL23
Primary somatosensory cortex forelimb region forepaw layer 3ipsiS1FPL33
Primary somatosensory cortex forelimb region forepaw layer 4ipsiS1FPL42.5
Primary somatosensory cortex forelimb region forepaw layer 5ipsiS1FPL52.5
Primary somatosensory cortex forelimb region forepaw layer 6ipsiS1FPL62.5
Primary somatosensory cortex forelimb stump representationipsiS1FLS3
Primary somatosensory cortex hindlimb regionipsiS1HL0
Primary somatosensory cortex hindlimb leg regionipsiS1HLLe-0.5
Primary somatosensory cortex hindlimb leg region layer 1ipsiS1HLLeL11
Primary somatosensory cortex hindlimb leg region layer 2ipsiS1HLLeL21
Primary somatosensory cortex hindlimb leg region layer 3ipsiS1HLLeL31
Primary somatosensory cortex hindlimb leg region layer 4ipsiS1HLLeL41
Primary somatosensory cortex hindlimb leg region layer 5ipsiS1HLLeL51
Primary somatosensory cortex hindlimb leg region layer 6ipsiS1HLLeL61
Primary somatosensory cortex hindlimb stump representationipsiS1HLS0.5
Primary somatosensory cortex trunk regionipsiS1Tr-0.5
Primary somatosensory cortex trunk region layer 1ipsiS1TrL13
Primary somatosensory cortex trunk region layer 2ipsiS1TrL23
Primary somatosensory cortex trunk region layer 3ipsiS1TrL33
Primary somatosensory cortex trunk region layer 4ipsiS1TrL42.5
Primary somatosensory cortex trunk region layer 5ipsiS1TrL52.5
Primary somatosensory cortex trunk region layer 6ipsiS1TrL62.5
Primary somatosensory cortex perigranular zoneipsiS1PZ3
Secondary somatosensory cortexipsiS22
Secondary somatosensory cortex layer 1ipsiS2L10.5
Secondary somatosensory cortex layer 2ipsiS2L20.5
Secondary somatosensory cortex layer 3ipsiS2L31.5
Secondary somatosensory cortex layer 4ipsiS2L41.5
Secondary somatosensory cortex layer 5ipsiS2L52
Secondary somatosensory cortex layer 6ipsiS2L62
Secondary visual cortex lateral areaipsiV2L1
Medial dysgranular cortexipsiMdyC1
Orbital cortexipsiOrC-0.5
Commissural systemsipsicos0.5
Intermediomedial cell column C4ipsiIMMC41
Spinal cord layer 6 C4ipsiSCL6C41
Spinal cord layer 4 C4ipsiSCL4C41
Spinal cord layer 7 C4ipsiSCL7C41
Intermediomedial cell column C5ipsiIMMC51
Spinal cord layer 6 C5ipsiSCL6C51
Spinal cord layer 4 C5ipsiSCL4C51
Spinal cord layer 7 C5ipsiSCL7C51
Ventral horn of spinal cordipsiVHMES-0.5
Intermediate gray layer of the superior colliculuscontraInG0
Superior colliculus medial partcontramSC0
CulmencontraCUL2
Caudal part of cerebellumcontraCERCca1
Pontine graycontraPG0
Spinal vestibular nucleuscontraSpVe2
Spinal vestibular nucleus rostral partcontraSpVeR0.5
Medial vestibular nucleuscontraMVe2
Medial vestibular nucleus caudal partcontraMVeP2
Medial vestibular nucleus ventral partcontraMVeV2
Lateral vestibular nucleuscontraLVe2
Cuneate nucleuscontraCu-0.5
GracilecontraGra-0.5
Nucleus XcontraX2
Inferior olive dorsal nucleuscontraIOD1
Ventrobasal complexcontraVB2
StriatumcontraSTR2
Medial striatumcontraCPum1
Dorsolateral striatumcontraCPudl2
Frontal cortex area 1contraFr12
Primary somatosensory cortex forelimb regioncontraS1FL2
Primary somatosensory cortex hindlimb regioncontraS1HL2
Secondary somatosensory cortexcontraS22
Spinal cord layer 6 C2contraSCL6C22
Spinal cord layer 7 C2contraSCL7C22
Spinal cord layer 9 C2contraSCL9C21
Spinal cord layer 6 C3contraSCL6C32
Spinal cord layer 7 C3contraSCL7C32
Spinal cord layer 9 C3contraSCL9C31
Cervical segment 4contraCS43
Intermediomedial cell column C4contraIMMC41
Spinal cord layer 6 C4contraSCL6C43
Spinal cord layer 4 C4contraSCL4C43
Spinal cord layer 7 C4contraSCL7C42
Spinal cord layer 9 C4contraSCL9C41
Cervical segment 5contraCS53
Intermediomedial cell column C5contraIMMC51
Spinal cord layer 6 C5contraSCL6C53
Spinal cord layer 4 C5contraSCL4C53
Spinal cord layer 7 C5contraSCL7C52
Spinal cord layer 9 C5contraSCL9C51
Cervical segment 6contraCS63
Spinal cord layer 6 C6contraSCL6C62
Spinal cord layer 7 C6contraSCL7C62
Spinal cord layer 9 C6contraSCL9C61
Cervical segment 7contraCS73
Spinal cord layer 6 C7contraSCL6C72
Spinal cord layer 7 C7contraSCL7C72
Spinal cord layer 9 C7contraSCL9C71
Cervical segment 8contraCS83
Spinal cord layer 6 C8contraSCL6C82
Spinal cord layer 7 C8contraSCL7C82
Spinal cord layer 9 C8contraSCL9C81
Cervical enlargementcontraCSegE-0.5
Thoracal segment 1contraT13
Spinal cord layer 6 T1contraSCL6T12
Spinal cord layer 7 T1contraSCL7T12
Spinal cord layer 9 T1contraSCL9T11
Thoracal segment 2contraT23
Ventral horn of spinal cordcontraVHMES3

Input from

NameSideAbbr.WeightDetails
Red nucleusipsiR0
Superior colliculusipsiSC2
Substantia nigra A9ipsiSN2
PonsipsiP3
Trigeminal nucleusipsi50
Cuneate nucleusipsiCu0
Basal nucleus MeynertipsiB-3
Central medial thalamic nucleusipsiCM2
Centrolateral thalamic nucleusipsiCL2
Paracentral thalamic nucleusipsiPC2
Posterior thalamic nuclear groupipsiPo-0.5
Mediodorsal part of posterior thalamic nuclear groupipsiPomd2
Submedius thalamic nucleus dorsal partipsiSubD0
Ventral anterior-lateral complex of the thalamusipsiVAL3
Ventro anterior thalamic nucleusipsiVA2
Ventrolateral thalamic nucleusipsiVL3
Ventrobasal complexipsiVB2
Ventral posterolateral thalamic nucleusipsiVPL3
Ventral posteromedial thalamic nucleusipsiVPM3
Lateral posterior thalamic nucleusipsiLP1
Laterodorsal thalamic nucleusipsiLD1
Posterior groupipsiPTG3
Reticular thalamic nucleusipsiRt3
Zona incertaipsiZI2
Anterior pretectal nucleusipsiAPT3
Anterior basolateral nucleusipsiBLA0
ClaustrumipsiCl0
Caudate putamenipsiCPu3
Subthalamic nucleusipsiSTh2
Parietal rhinal cortexipsiPaRH-0.5
Retrosplenial regionsipsiRS0
Cingulate cortex area 1ipsiCg12
Frontal cortex area 2ipsiFr21
Lateral parietal association cortexipsiLPtA-0.5
Medial parietal association cortexipsiMPtA-0.5
Parietal cortex posterior areaipsiParP2
Parietal cortex area 1ipsiPar12
Parietal cortex area 2ipsiPar22.5
Parietal cortex ventral area layer 5ipsiParVL53
Parietal cortex ventral area layer 6ipsiParVL63
Parietal cortex ventral area layer 4ipsiParVL42.5
Parietal cortex ventral area layer 1ipsiParVL11.5
Parietal cortex ventral area layer 2ipsiParVL21.5
Parietal cortex ventral area layer 3ipsiParVL32.5
Primary auditory cortexipsiAu10
Secondary auditory cortexipsiAu20
Insular cortexipsiICX2
Agranular insular cortexipsiAI2
Perirhinal cortexipsiA352
Ectorhinal cortexipsiA360
Lateral agranular prefrontal cortexipsiAGl3
Medial agranular prefrontal cortexipsiAGm3
Primary somatosensory cortex central intercalated zoneipsiS1iZce3
Primary somatosensory cortex medial part of the central intercalated zoneipsiS1iZMce-0.5
Primary somatosensory cortex lateral intercalated zoneipsiS1iZL3
Primary somatosensory cortex lateral partipsiS1La-0.5
Primary somatosensory cortex forelimb region forepawipsiS1FP-0.5
Primary somatosensory cortex forelimb region forepaw layer 2ipsiS1FPL23
Primary somatosensory cortex forelimb region forepaw layer 3ipsiS1FPL33
Primary somatosensory cortex forelimb region forepaw layer 4ipsiS1FPL42
Primary somatosensory cortex forelimb region forepaw layer 5ipsiS1FPL51.5
Primary somatosensory cortex forelimb region forepaw layer 6ipsiS1FPL61.5
Primary somatosensory cortex hindlimb regionipsiS1HL1
Primary somatosensory cortex hindlimb leg regionipsiS1HLLe-0.5
Primary somatosensory cortex hindlimb leg region layer 2ipsiS1HLLeL21
Primary somatosensory cortex hindlimb leg region layer 3ipsiS1HLLeL31
Primary somatosensory cortex hindlimb leg region layer 4ipsiS1HLLeL40.5
Primary somatosensory cortex hindlimb leg region layer 5ipsiS1HLLeL50.5
Primary somatosensory cortex hindlimb leg region layer 6ipsiS1HLLeL60.5
Primary somatosensory cortex shoulder regionipsiS1Sh-0.5
Primary somatosensory cortex trunk regionipsiS1Tr-0.5
Primary somatosensory cortex trunk region layer 2ipsiS1TrL23
Primary somatosensory cortex trunk region layer 3ipsiS1TrL33
Primary somatosensory cortex trunk region layer 4ipsiS1TrL42
Primary somatosensory cortex trunk region layer 5ipsiS1TrL51.5
Primary somatosensory cortex trunk region layer 6ipsiS1TrL61.5
Primary somatosensory cortex perigranular zoneipsiS1PZ3
Secondary somatosensory cortexipsiS22
Secondary somatosensory cortex layer 1ipsiS2L10.5
Secondary somatosensory cortex layer 2ipsiS2L22
Secondary somatosensory cortex layer 3ipsiS2L32
Secondary somatosensory cortex layer 4ipsiS2L41.5
Secondary somatosensory cortex layer 5ipsiS2L52
Secondary somatosensory cortex layer 6ipsiS2L62
Rostral forelimb area of SmithipsiRFA-0.5
Primary visual cortexipsiV10
Secondary visual cortexipsiV20
Pyramidal tractipsipy-2
Red nucleuscontraR0
Superior colliculuscontraSC1
Substantia nigra A9contraSN0
PonscontraP1
Trigeminal nucleuscontra51
Cuneate nucleuscontraCu2
Submedius thalamic nucleus dorsal partcontraSubD0
Ventral anterior-lateral complex of the thalamuscontraVAL0
Ventral posterolateral thalamic nucleuscontraVPL0
Ventral posteromedial thalamic nucleuscontraVPM0
Posterior groupcontraPTG0
Reticular thalamic nucleuscontraRt0
Zona incertacontraZI0
Anterior pretectal nucleuscontraAPT0
Anterior basolateral nucleuscontraBLA0
ClaustrumcontraCl0
Caudate putamencontraCPu3
Subthalamic nucleuscontraSTh0
Retrosplenial regionscontraRS0
Cingulate cortex area 1contraCg10
Frontal cortex area 1contraFr12
Frontal cortex area 2contraFr22
Frontal cortex area 3contraFr32
Parietal cortex posterior areacontraParP0
Primary auditory cortexcontraAu10
Secondary auditory cortexcontraAu20
Insular cortexcontraICX2
Perirhinal cortexcontraA350
Ectorhinal cortexcontraA360
Lateral agranular prefrontal cortexcontraAGl3
Medial agranular prefrontal cortexcontraAGm1
Primary somatosensory cortexcontraS13
Primary somatosensory cortex forelimb regioncontraS1FL2
Primary somatosensory cortex hindlimb regioncontraS1HL2
Secondary somatosensory cortexcontraS22
Primary visual cortexcontraV10
Secondary visual cortexcontraV20
Dorsal horn T1contraDHT1-0.5
Dorsal horn T2contraDHT2-0.5
Dorsal horn T3contraDHT3-0.5

Key for weights

ValueWeight
-3 unknown
-2 fibers of passage
-1 not clear
-0.5 exists
0 not present
0.5 very light
1 light / sparse
1.5 light / moderate
2 moderate / dense
2.5 moderate / strong
3 strong
4 very strong





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