University of Rostock

Department of Anatomy

Neuroscience Group

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Rat connectome



Suprachiasmatic nucleus medial division left


Abbreviation
SCnM
Color       
Superior regionsSuprachiasmatic nucleus

SynonymsAbbr.Language
Suprachiasmatic nucleus medial divisionSCnMEng
Nucleus suprachiasmaticus medialis Lat

Output to

NameSideAbbr.WeightDetails
Preoptic regionipsiPREO3
Dorsomedial hypothalamic nucleusipsiDMHy3
Rostral subparaventricular zoneipsiRSuPZ2
Subparaventricular area medial aspectipsiSuPZma3
Paraventricular hypothalamic nucleus caudal partipsiPaPoC2
Paraventricular hypothalamic nucleus medial parvicellular part [Periventricular zone anterior region]ipsiPaMP1.5
Paraventricular hypothalamic nucleusipsiPa3
Border of the posterior magnocellular and medial parvocellular subdivision at mid-level of the rostrocaudal extentipsiPabPmmp1.5
Paraventricular hypothalamic nucleus magnocellular division posterior part caudal levelipsiPaMagPC1.5
Paraventricular hypothalamic nucleus dorsal parvocellular divisionipsiPavPoD1.5
Paraventricular hypothalamic nucleus periventricular partipsiPapv1.5
Zona incertaipsiZI3
Bed nucleus of the stria terminalisipsiBST3
Infralimbic cortex anterior part layer 5ipsiILAnL53
Infralimbic cortex anterior part layer 6ipsiILAnL63
Preoptic regioncontraPREO3
Dorsomedial hypothalamic nucleuscontraDMHy3
Subparaventricular area medial aspectcontraSuPZma3
Paraventricular hypothalamic nucleuscontraPa0.5
Zona incertacontraZI0.5
Bed nucleus of the stria terminaliscontraBST0.5
Thyroid glandipsiOrgThyroid-0.5

Input from

NameSideAbbr.WeightDetails
Interpeduncular nucleus rostral subnucleus midrostrocaudal partipsiIPRmrc3

Key for weights

ValueWeight
-3 unknown
-2 fibers of passage
-1 not clear
-0.5 exists
0 not present
0.5 very light
1 light / sparse
1.5 light / moderate
2 moderate / dense
2.5 moderate / strong
3 strong
4 very strong





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