| Name | Side | Abbr. | Weight | Details |
|---|
| Dorsolateral periaqueductal gray | ipsi | DLPAG | -0.5 | |
| Lateral periaqueductal gray | ipsi | LPAG | -0.5 | |
| Posterodorsal tegmental nucleus | ipsi | PDTg | 0 | |
| Laterodorsal tegmental nucleus | ipsi | LDTg | -0.5 | |
| Locus coeruleus | ipsi | LC | 0 | |
| Nucleus incertus | ipsi | NI | 4 | |
| Nucleus incertus pars compacta | ipsi | NIc | 4 | |
| Nucleus incertus lateral part of the diffuse part | ipsi | NIdL | -0.5 | |
| Dorsal raphe nucleus lateral wing | ipsi | DRlw | -0.5 | |
| Dorsal raphe nucleus midrostral part | ipsi | DRmiro | -0.5 | |
| Median raphe nucleus | ipsi | MnR | -0.5 | |
| Paramedian raphe nucleus | ipsi | PMnR | -0.5 | |
| Raphe nuclei rostral part | ipsi | RANR | -0.5 | |
| Medial septal nucleus | ipsi | MS | 0 | |
| Medial preoptic area | ipsi | MPA | -0.5 | |
| Lateral hypothalamic area perifornical part | ipsi | PFx | -0.5 | |
| Peduncular part of lateral hypothalamus | ipsi | PLH | -0.5 | |
| Dorsomedial hypothalamic nucleus [Medial zone] | ipsi | DM | -0.5 | |
| Suprachiasmatic nucleus | ipsi | SCh | 3 | |
| Suprachiasmatic nucleus lateral division | ipsi | SChl | 3 | |
| Suprachiasmatic nucleus medial division | ipsi | SCnM | 3 | |
| Submedius thalamic nucleus | ipsi | Sub | -0.5 | |
| Border zone between rostralmost part of the mediodorsal thalamic nucleus and paratenial thalamic nucleus | ipsi | BzMDPt | -0.5 | |
| Lateral habenular nucleus medial part | ipsi | LHbM | 3 | |
| Dentate gyrus molecular layer | ipsi | DGmL | -0.5 | |
| Granule cell layer of the dentate gyrus | ipsi | DGgL | -0.5 | |
| Field CA1 of hippocampus ventral part | ipsi | CA1v | -0.5 | |
| Septal region | ipsi | SER | -0.5 | |
| Lateral septal nucleus caudal part | ipsi | LSc | 4 | |
| Lateral septal nucleus intermediate part | ipsi | LSI | -0.5 | |
| Lateral septal nucleus ventral part | ipsi | LSV | 3 | |
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