University of Rostock

Department of Anatomy

Neuroscience Group

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Rat connectome



Suprachiasmatic nucleus core region left


Abbreviation
SChCo
Color       
Superior regionsSuprachiasmatic nucleus

SynonymsAbbr.Language
Suprachiasmatic nucleus core regionSChCoEng

Output to

NameSideAbbr.WeightDetails
Ventromedial preoptic regionipsivmPREO-0.5
Dorsomedial hypothalamic nucleusipsiDMHy1
Subparaventricular zoneipsiSuPZ3
Subparaventricular area medial aspectipsiSuPZma3
Subparaventricular lateral aspectipsiSuPZLa3
Ventral tuberal areaipsiVeTA3
Paraventricular hypothalamic nucleusipsiPa2
Suprachiasmatic nucleus perinuclear zoneipsiSChpnz3
Caudal peri-suprachiasmatic nucleusipsiSChpnzc3
Rostral suprachiasmatic nucleus perinuclear zoneipsiSChpnzR-0.5
Paratenial thalamic nucleusipsiPT-0.5
Paraventricular thalamic nucleusipsiPV1.5
Paraventricular thalamic nucleus rostral tip of the anterior partipsiPVArt2
Bed nucleus of the stria terminalisipsiBST-0.5
Lateral septal nucleusipsiLS3
Ventromedial preoptic regioncontravmPREO1
Subparaventricular lateral aspectcontraSuPZLa1
Ventral tuberal areacontraVeTA1
Paraventricular hypothalamic nucleuscontraPa1
Suprachiasmatic nucleus perinuclear zonecontraSChpnz1
Caudal peri-suprachiasmatic nucleuscontraSChpnzc1
Paraventricular thalamic nucleuscontraPV0.5
Bed nucleus of the stria terminaliscontraBST1
Lateral septal nucleuscontraLS0.5

Key for weights

ValueWeight
-3 unknown
-2 fibers of passage
-1 not clear
-0.5 exists
0 not present
0.5 very light
1 light / sparse
1.5 light / moderate
2 moderate / dense
2.5 moderate / strong
3 strong
4 very strong





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