University of Rostock

Department of Anatomy

Neuroscience Group

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Rat connectome



Suprachiasmatic nucleus perinuclear zone left


Abbreviation
SChpnz
Color       
Superior regionsSuprachiasmatic nucleus

SynonymsAbbr.Language
Peri-suprachiasmatic nucleus region Eng
Peri-suprachiasmatic nucleus Eng
Suprachiasmatic nucleus perinuclear zoneSChpnzEng

SubregionsSide
Caudal peri-suprachiasmatic nucleusleft
Rostral suprachiasmatic nucleus perinuclear zoneleft

Output to

NameSideAbbr.WeightDetails
Periaqueductal gray rostral most partipsiPAGRmo-0.5
Dorsomedial hypothalamic nucleusipsiDMHy3
Periventricular hypothalamic nucleusipsiPe-0.5
Paraventricular thalamic nucleusipsiPV3
Zona incertaipsiZI3
Dorsal geniculate nucleus lateral partipsiDLGl-0.5
Lateral geniculate complex ventromedial partipsiLGvm-0.5
Ventral lateral geniculate nucleusipsiVLG-0.5
Periaqueductal gray rostral most partcontraPAGRmo-0.5

Input from

NameSideAbbr.WeightDetails
Dorsomedial hypothalamic nucleus [Medial zone]ipsiDM3
Suprachiasmatic nucleusipsiSCh-0.5
Suprachiasmatic nucleus dorsomedial partipsiSCnDM1
Suprachiasmatic nucleus ventrolateral partipsiSCnVL3
Suprachiasmatic nucleus core regionipsiSChCo3
Subfornical organipsiSFO-0.5
Subiculum ventral partipsiSv2
Lateral septal nucleusipsiLS3
Ventral medial septumipsiVMSe4
Suprachiasmatic nucleus dorsomedial partcontraSCnDM-0.5
Suprachiasmatic nucleus ventrolateral partcontraSCnVL-0.5
Suprachiasmatic nucleus core regioncontraSChCo1

Key for weights

ValueWeight
-3 unknown
-2 fibers of passage
-1 not clear
-0.5 exists
0 not present
0.5 very light
1 light / sparse
1.5 light / moderate
2 moderate / dense
2.5 moderate / strong
3 strong
4 very strong





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