University of Rostock

Department of Anatomy

Neuroscience Group

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Rat connectome



Extrathoracic trachea left


Abbreviation
OrgsTrasEx
Color       
Superior regionsTrachea side

SynonymsAbbr.Language
Extrathoracic tracheaOrgsTrasEx 

Input from

NameSideAbbr.WeightDetails
Ventrolateral midbrain central grayipsiCGMeVL-10
A5 noradrenaline cellsipsiA5-10
Barringtons nucleusipsiBar-10
Locus coeruleusipsiLC-10
Parapyramidal nucleusipsiPPy-10
Koelliker Fuse nucleusipsiKF-10
Gigantocellular reticular nucleus alpha partipsiGiA-10
Gigantocellular reticular nucleus ventral partipsiGiV-10
Medullary reticular nucleus dorsal partipsiMdDd-10
Parvicellular reticular nucleusipsiPCRt-10
Parvicellular reticular nucleus alpha partipsiPCRtA-10
Subcoeruleus nucleusipsiSubC-10
C1 adrenaline cellsipsiC1-10
Ambiguus nucleusipsiAmb-10
Ambiguus nucleus rostral partipsiAmbR-0.5
Area postremaipsiAP-10
Nucleus of the solitary tract central partipsiSolCe-10
Nucleus of the solitary tract commissural partipsiSolC-10
Nucleus of the solitary tract medial partipsiSolM-10
Nucleus of the solitary tract ventral partipsiSolV-10
Nucleus of the solitary tract ventrolateral partipsiSolVL-10
Dorsal motor nucleus of vagusipsi10-10
Raphe magnus nucleusipsiRMg-10
Raphe obscurus nucleusipsiROb-10
Raphe pallidus nucleusipsiRPa-10
Rostral ventrolateral medullaipsiRVLM-10
Lateral paragigantocellular nucleusipsiLPGi-10
Retrotrapezoid nucleusipsiRTN-10
Ventral surface of the medulla oblongataipsiVSMeO-10
Lateral hypothalamic areaipsiLH-10
Dorsal hypothalamic areaipsiDA-10
Paraventricular hypothalamic nucleusipsiPa-10
Precommissural nucleusipsiPrC-10

Key for weights

ValueWeight
-3 unknown
-2 fibers of passage
-1 not clear
-0.5 exists
0 not present
0.5 very light
1 light / sparse
1.5 light / moderate
2 moderate / dense
2.5 moderate / strong
3 strong
4 very strong





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