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Rat connectome



Retrotrapezoid nucleus left


Abbreviation
RTN
Color       
Superior regionsMedulla oblongata

SynonymsAbbr.Language
Retrotrapezoid nucleusRTNEng

SubregionsSide
Caudal retrotrapezoid nucleusleft
Retrotrapezoid nucleus chemoreceptor neuronsleft

Output to

NameSideAbbr.WeightDetails
Pedunculopontine tegmental nucleusipsiPPTg3
A5 noradrenaline cellsipsiA53
Dorsolateral ponsipsiDoLaP3
Medial rostroventrolateral medullaipsiMRVL4
Locus coeruleusipsiLC3
Intermediate reticular nucleusipsiIRt3
Pontine reticular nucleus oral part central partipsiPnOC3
Pontine reticular nucleus ventral partipsiPnV3
Pontine reticular nucleus caudal partipsiPNC2
Cuneiforme nucleusipsiCnF2
Parabrachial nucleusipsiPB3
Koelliker Fuse nucleusipsiKF3
Lateral parabrachial nucleusipsiLPB3
Lateral parabrachial nucleus central partipsiLPBC3
Lateral parabrachial nucleus crescent partipsiLPBCr3
Lateral parabrachial nucleus dorsal partipsiLPBD3
Lateral parabrachial nucleus external partipsiLPBE2
Parabrachial nucleus medialipsiPBnMe3
Medial parabrachial nucleus external partipsiMPBE2
Gigantocellular reticular nucleusipsiGi3
Gigantocellular reticular nucleus alpha partipsiGiA2
Medullary reticular nucleus dorsal partipsiMdDd2
Medullary reticular nucleus ventral partipsiMdV2
Parvicellular reticular nucleusipsiPCRt3
Subcoeruleus nucleusipsiSubC3
C1 adrenaline cellsipsiC13
Boetzinger complexipsiBo4
Parafacial nucleus respiratory groupipsi7Prg3
Hypoglossal nucleusipsi12S-0.5
Intertrigeminal nucleusipsiI53
Nucleus of the solitary tract caudal partipsiSolca3
Nucleus of the solitary tract commissural partipsiSolC1
Nucleus of the solitary tract intermediate partipsiSolIM3
Nucleus of the solitary tract ventrolateral partipsiSolVL4
Dorsal motor nucleus of vagusipsi102
Raphe magnus nucleusipsiRMg3
Raphe obscurus nucleusipsiROb1
Raphe pallidus nucleusipsiRPa1
Ventral lateral medulla oblongataipsiMVL4
Caudoventral respiratory groupipsiCVRG4
Ventral respiratory groupipsiVReG3
Dorsal ventral respiratory groupipsiDVReG-0.5
Ventral respiratory group caudal partipsiVCReG-0.5
Lateral paragigantocellular nucleusipsiLPGi2
Pre Boetzinger complexipsiPrBo4
Rostral ventral respiratory groupipsiRVRG4
Ventral horn C1ipsiVHC1-0.5
Ventral horn C2ipsiVHC2-0.5
Ventral horn C3ipsiVHC3-0.5
Ventral horn C4ipsiVHC4-0.5
Ventral horn C5ipsiVHC5-0.5
Ventral horn C6ipsiVHC6-0.5
Ventral horn C7ipsiVHC7-0.5
Ventral horn C8ipsiVHC8-0.5
Intermediolateral cell column T1ipsiIMLT13
Intermediolateral cell column T2ipsiIMLT23
Intermediolateral cell column T3ipsiIMLT33
Intermediolateral cell column T4ipsiIMLT43
Intermediolateral cell column T5ipsiIMLT53
Intermediolateral cell column T6ipsiIMLT63
Intermediolateral cell column T7ipsiIMLT73
Intermediolateral cell column T8ipsiIMLT83
Intermediolateral cell column T9ipsiIMLT93
Intermediolateral cell column T10ipsiIMLT103
Intermediolateral cell column T11ipsiIMLT113
Intermediolateral cell column T12ipsiIMLT123
Intermediolateral cell column T13ipsiIMLT133
Pedunculopontine tegmental nucleuscontraPPTg1
A5 noradrenaline cellscontraA51
Intermediate reticular nucleuscontraIRt1
Pontine reticular nucleus oral part central partcontraPnOC1
Pontine reticular nucleus ventral partcontraPnV1
Parabrachial nucleuscontraPB1
Koelliker Fuse nucleuscontraKF1
Lateral parabrachial nucleuscontraLPB1
Parabrachial nucleus medialcontraPBnMe1
Gigantocellular reticular nucleuscontraGi1
Parvicellular reticular nucleuscontraPCRt1
Subcoeruleus nucleuscontraSubC1
C1 adrenaline cellscontraC11
Boetzinger complexcontraBo0
Intertrigeminal nucleuscontraI51
Nucleus of the solitary tract caudal partcontraSolca1
Raphe magnus nucleuscontraRMg1
Caudoventral respiratory groupcontraCVRG0
Ventral respiratory groupcontraVReG1
Retrotrapezoid nucleuscontraRTN1
Rostral ventral respiratory groupcontraRVRG1
Ventral horn C1contraVHC1-0.5
Ventral horn C2contraVHC2-0.5
Ventral horn C3contraVHC3-0.5
Ventral horn C4contraVHC4-0.5
Ventral horn C5contraVHC5-0.5
Ventral horn C6contraVHC6-0.5
Ventral horn C7contraVHC7-0.5
Ventral horn C8contraVHC8-0.5
Intermediolateral cell column T1contraIMLT11
Intermediolateral cell column T2contraIMLT21
Intermediolateral cell column T3contraIMLT31
Intermediolateral cell column T4contraIMLT41
Intermediolateral cell column T5contraIMLT51
Intermediolateral cell column T6contraIMLT61
Intermediolateral cell column T7contraIMLT71
Intermediolateral cell column T8contraIMLT81
Intermediolateral cell column T9contraIMLT91
Intermediolateral cell column T10contraIMLT101
Intermediolateral cell column T11contraIMLT111
Intermediolateral cell column T12contraIMLT121
Intermediolateral cell column T13contraIMLT131
LungipsiOrgsLung-10
Extrathoracic tracheaipsiOrgsTrasEx-10
Trachea wallipsiOrgsTrasW-0.5

Input from

NameSideAbbr.WeightDetails
Paralemniscal nucleusipsiPL1
Periaqueductal grayipsiPAG1
Dorsolateral periaqueductal grayipsiDLPAG-0.5
Dorsomedial periaqueductal grayipsiDMPAG2
Lateral periaqueductal grayipsiLPAG2
Ventrolateral periaqueductal grayipsiVLPAG2
Substantia nigra compact partipsiSNC0
Pedunculopontine tegmental nucleusipsiPPTg1
Cerebellar cortexipsiCERC1
PonsipsiP0.5
A5 noradrenaline cellsipsiA53
Medial rostroventrolateral medullaipsiMRVL2
Locus coeruleusipsiLC0
Reticular systemipsiRF1
Dorsal reticular formationipsiDRF2
Intermediate reticular nucleusipsiIRt3
Paramedian reticular nucleusipsiPMn0.5
Rostroventrolateral reticular nucleusipsiRVL0.5
Deep mesencephalic nucleusipsiDpMe2
Pontine reticular nucleusipsiPRN2
Pontine reticular nucleus ventral partipsiPnV1
Pontine reticular nucleus caudal partipsiPNC1
Cuneiforme nucleusipsiCnF1
Parabrachial nucleusipsiPB3
Koelliker Fuse nucleusipsiKF3
Lateral parabrachial nucleusipsiLPB3
Lateral parabrachial nucleus central partipsiLPBC4
Lateral parabrachial nucleus crescent partipsiLPBCr3
Lateral parabrachial nucleus dorsal partipsiLPBD3
Lateral parabrachial nucleus external partipsiLPBE3
Parabrachial nucleus medialipsiPBnMe3
Medial parabrachial nucleus external partipsiMPBE2
Gigantocellular reticular nucleusipsiGi1
Caudal medullary reticular formationipsiCMdD3
Medial subnucleus reticularis ventralisipsiMSRV0.5
Medullary reticular nucleus dorsal partipsiMdDd2
Medullary reticular nucleus ventral partipsiMdV2
Parvicellular reticular nucleusipsiPCRt1
Subcoeruleus nucleusipsiSubC2
Ambiguus nucleusipsiAmb1.5
Area postremaipsiAP3
Boetzinger complexipsiBo1
Intertrigeminal nucleusipsiI50
Motor trigeminal nucleusipsiMo51.5
Spinal trigeminal nucleusipsiSp5nc2
Nucleus of the solitary tractipsiSol3
Nucleus of the solitary tract caudal partipsiSolca3
Nucleus of the solitary tract commissural partipsiSolC4
Nucleus of the solitary tract dorsolateral partipsiSolDL3
Nucleus of the solitary tract gelatinous partipsiSolG3
Nucleus of the solitary tract intermediate partipsiSolIM4
Interstitial nucleus of the solitary tract compact partipsiSolico-0.5
Interstitial nucleus of the solitary tract diffuse partipsiSolidi-0.5
Nucleus of the solitary tract medial partipsiSolM1
Nucleus of the solitary tract ventral partipsiSolV1
Nucleus of the solitary tract ventrolateral partipsiSolVL2
Dorsolateral edge of the median nucleus of the solitary tractipsiSolMedDL-0.5
Around the nucleus of the solitary tractipsiSolAr3
Dorsal motor nucleus of vagusipsi103
Dorsal raphe nucleusipsiDR1
Raphe magnus nucleusipsiRMg3
Raphe obscurus nucleusipsiROb1
Raphe pallidus nucleusipsiRPa1
Ventral lateral medulla oblongataipsiMVL2
Caudoventral respiratory groupipsiCVRG2
Lateral paragigantocellular nucleusipsiLPGi3
Pre Boetzinger complexipsiPrBo1
Rostral ventral respiratory groupipsiRVRG2
Subpostrema areaipsiSubP3
Nucleus of the horizontal limb of the diagonal bandipsiHDB0
Nucleus of the vertical limb of the diagonal bandipsiVDB0
Substantia innominataipsiSI3
Medial dorsal hypothalamusipsiMDH-0.5
Lateral zoneipsiLHA3
Lateral hypothalamic areaipsiLH-0.5
Lateral hypothalamic area perifornical partipsiPFx3
Lateral hypothalamic area [Lateral zone mammillary level]ipsiLHLZM3
Striohypothalamic nucleusipsiStHy1
Anterior hypothalamic area dorsal partipsiAHAd1
Dorsal hypothalamic areaipsiDA3
Dorsomedial hypothalamic nucleus dorsal partipsiDMD1
Ventromedial hypothalamic nucleusipsiVMH1
Nucleus paraventricularis [Periventricular zone anterior region]ipsiPaPAR3
Paraventricular hypothalamic nucleusipsiPa-0.5
Parafascicular thalamic nucleusipsiPF2
Zona incertaipsiZI1
Tuber cinereum areaipsiTC1
Bed nucleus of the stria terminalisipsiBST1
Central amygdaloid nucleusipsiCe3
Globus pallidusipsiGP0
Caudate putamenipsiCPu0
HippocampusipsiHIPP0
Infralimbic cortexipsiIL1
Frontal association cortexipsiFrA1
Insular cortexipsiICX1
Motoric regionsipsiM1
Medial prefrontal cortexipsimPFC1
Sensory regionsipsiSR1
Dorsal horn C1ipsiDHC11
Ventral horn C1ipsiVHC11
Spinal cord layer 7 C1ipsiSCL7C12
Dorsal horn C2ipsiDHC21
Ventral horn C2ipsiVHC21
Spinal cord layer 7 C2ipsiSCL7C22
Dorsal horn C3ipsiDHC31
Ventral horn C3ipsiVHC31
Spinal cord layer 7 C3ipsiSCL7C32
Dorsal horn C4ipsiDHC41
Ventral horn C4ipsiVHC41
Spinal cord layer 7 C4ipsiSCL7C42
Dorsal horn C5ipsiDHC51
Ventral horn C5ipsiVHC51
Spinal cord layer 7 C5ipsiSCL7C52
Dorsal horn C6ipsiDHC61
Ventral horn C6ipsiVHC61
Spinal cord layer 7 C6ipsiSCL7C62
Dorsal horn C7ipsiDHC71
Ventral horn C7ipsiVHC71
Spinal cord layer 7 C7ipsiSCL7C72
Dorsal horn C8ipsiDHC81
Ventral horn C8ipsiVHC81
Spinal cord layer 7 C8ipsiSCL7C82
Dorsal horn T1ipsiDHT11
Ventral horn T1ipsiVHT11
Dorsal horn T2ipsiDHT21
Ventral horn T2ipsiVHT21
Dorsal horn T3ipsiDHT31
Ventral horn T3ipsiVHT31
Dorsal horn T4ipsiDHT41
Ventral horn T4ipsiVHT41
Dorsal horn T5ipsiDHT51
Ventral horn T5ipsiVHT51
Dorsal horn T6ipsiDHT61
Ventral horn T6ipsiVHT61
Dorsal horn T7ipsiDHT71
Ventral horn T7ipsiVHT71
Dorsal horn T8ipsiDHT81
Ventral horn T8ipsiVHT81
Dorsal horn T9ipsiDHT91
Ventral horn T9ipsiVHT91
Dorsal horn T10ipsiDHT101
Ventral horn T10ipsiVHT101
Dorsal horn T11ipsiDHT111
Ventral horn T11ipsiVHT111
Dorsal horn T12ipsiDHT121
Ventral horn T12ipsiVHT121
Dorsal horn T13ipsiDHT131
Ventral horn T13ipsiVHT131
Periaqueductal graycontraPAG0.5
Cerebellar cortexcontraCERC0.5
A5 noradrenaline cellscontraA50
Locus coeruleuscontraLC0
Parapyramidal nucleuscontraPPy1
Reticular systemcontraRF0.5
Dorsal reticular formationcontraDRF2
Parabrachial nucleuscontraPB1
Koelliker Fuse nucleuscontraKF1
Lateral parabrachial nucleuscontraLPB1
Lateral parabrachial nucleus crescent partcontraLPBCr1
Lateral parabrachial nucleus dorsal partcontraLPBD1
Lateral parabrachial nucleus external partcontraLPBE1
Parabrachial nucleus medialcontraPBnMe1
Area postremacontraAP1
Intertrigeminal nucleuscontraI50
Nucleus of the solitary tractcontraSol1
Nucleus of the solitary tract caudal partcontraSolca1
Dorsal raphe nucleuscontraDR0.5
Raphe obscurus nucleuscontraROb0.5
Raphe pallidus nucleuscontraRPa0.5
Lateral paragigantocellular nucleuscontraLPGi3
Retrotrapezoid nucleuscontraRTN1
Nucleus of the horizontal limb of the diagonal bandcontraHDB0
Nucleus of the vertical limb of the diagonal bandcontraVDB0
Substantia innominatacontraSI1
Lateral hypothalamic areacontraLH1
Lateral hypothalamic area perifornical partcontraPFx1
Striohypothalamic nucleuscontraStHy0.5
Anterior hypothalamic area dorsal partcontraAHAd0.5
Dorsomedial hypothalamic nucleus dorsal partcontraDMD0.5
Ventromedial hypothalamic nucleuscontraVMH0.5
Nucleus paraventricularis [Periventricular zone anterior region]contraPaPAR1
Zona incertacontraZI0.5
Tuber cinereum areacontraTC0.5
Bed nucleus of the stria terminaliscontraBST0.5
Central amygdaloid nucleuscontraCe1
Globus palliduscontraGP0
Caudate putamencontraCPu0
HippocampuscontraHIPP0
Infralimbic cortexcontraIL0.5
Frontal association cortexcontraFrA0.5
Insular cortexcontraICX0.5
Motoric regionscontraM0.5
Sensory regionscontraSR0.5
Dorsal horn C1contraDHC10.5
Ventral horn C1contraVHC10.5
Spinal cord layer 7 C1contraSCL7C11
Dorsal horn C2contraDHC20.5
Ventral horn C2contraVHC20.5
Spinal cord layer 7 C2contraSCL7C21
Dorsal horn C3contraDHC30.5
Ventral horn C3contraVHC30.5
Spinal cord layer 7 C3contraSCL7C31
Dorsal horn C4contraDHC40.5
Ventral horn C4contraVHC40.5
Spinal cord layer 7 C4contraSCL7C41
Dorsal horn C5contraDHC50.5
Ventral horn C5contraVHC50.5
Spinal cord layer 7 C5contraSCL7C51
Dorsal horn C6contraDHC60.5
Ventral horn C6contraVHC60.5
Spinal cord layer 7 C6contraSCL7C61
Dorsal horn C7contraDHC70.5
Ventral horn C7contraVHC70.5
Spinal cord layer 7 C7contraSCL7C71
Dorsal horn C8contraDHC80.5
Ventral horn C8contraVHC80.5
Spinal cord layer 7 C8contraSCL7C81
Dorsal horn T1contraDHT10.5
Ventral horn T1contraVHT10.5
Dorsal horn T2contraDHT20.5
Ventral horn T2contraVHT20.5
Dorsal horn T3contraDHT30.5
Ventral horn T3contraVHT30.5
Dorsal horn T4contraDHT40.5
Ventral horn T4contraVHT40.5
Dorsal horn T5contraDHT50.5
Ventral horn T5contraVHT50.5
Dorsal horn T6contraDHT60.5
Ventral horn T6contraVHT60.5
Dorsal horn T7contraDHT70.5
Ventral horn T7contraVHT70.5
Dorsal horn T8contraDHT80.5
Ventral horn T8contraVHT80.5
Dorsal horn T9contraDHT90.5
Ventral horn T9contraVHT90.5
Dorsal horn T10contraDHT100.5
Ventral horn T10contraVHT100.5
Dorsal horn T11contraDHT110.5
Ventral horn T11contraVHT110.5
Dorsal horn T12contraDHT120.5
Ventral horn T12contraVHT120.5
Dorsal horn T13contraDHT130.5
Ventral horn T13contraVHT130.5

Key for weights

ValueWeight
-3 unknown
-2 fibers of passage
-1 not clear
-0.5 exists
0 not present
0.5 very light
1 light / sparse
1.5 light / moderate
2 moderate / dense
2.5 moderate / strong
3 strong
4 very strong





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