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Rat connectome



Parapyramidal nucleus left


Abbreviation
PPy
Color       
Superior regionsPons

SynonymsAbbr.Language
Parapyramidal area Eng
Parapyramidal nucleusPPYEng
Parapyramidal region Eng
Parapyramidal reticular region Eng
Parapyramidal reticular region of the medulla Eng
Parapyramidal nucleusPPyEng
Parapyramidal nucleusPPYEng
Parapyramidal reticular formation Eng
Parapyramidal areaPPyEng

SubregionsSide
Parapyramidal nucleus deep partleft
Parapyramidal nucleus superificial partleft
Medial parapyramidal nucleusleft
Caudal parapyramidal nucleusleft
Lateral parapyramidal nucleusleft

Output to

NameSideAbbr.WeightDetails
Lateral tegmental nucleusipsiLTN3
Lateral tegmental nucleus caudal aspect of catecholaminergic cell columnipsiLTNcc-0.5
Lateral tegmental nucleus medial aspect of C1 area of RVLipsiLTNmc1rvL-0.5
Dorsolateral ponsipsiDoLaP1
Boetzinger complexipsiBo2
Hypoglossal nucleusipsi12S2
Nucleus of the solitary tractipsiSol3
Nucleus of the solitary tract medial partipsiSolM-0.5
Dorsal motor nucleus of vagusipsi10-0.5
Dorsal motor nucleus of vagus caudal partipsi10C2
Dorsal motor nucleus of vagus lateral partipsi10L2
Dorsal motor nucleus of vagus medial partipsi10M2
Dorsal motor nucleus of vagus rostral partipsi10R2
Ventral respiratory group rostral partipsiVReGr3
Retroambiguus nucleusipsiRAmb-0.5
Rostral ventral respiratory groupipsiRVRG1.5
Choroidea innervating part of the superior salivatory nucleusipsiCSSN-10
Caudal ventral medulla oblongataipsiCVMeO-0.5
Sympathoexitatory area rostral to ventrolateral medulla ipsiMeObSe0
Paraventricular thalamic nucleusipsiPV-0.5
Intralaminar nucleiipsiILN-0.5
Intermediolateral cell columnipsiIML3
Spinal cord layer 5 C1ipsiSCL5C13
Spinal cord layer 3 C1ipsiSCL3C13
Spinal cord layer 4 C1ipsiSCL4C13
Spinal cord layer 1 C1ipsiSCL1C13
Spinal cord layer 2 C1ipsiSCL2C13
Ventral horn C1ipsiVHC1-0.5
Spinal cord layer 5 C2ipsiSCL5C23
Spinal cord layer 3 C2ipsiSCL3C23
Spinal cord layer 4 C2ipsiSCL4C23
Spinal cord layer 1 C2ipsiSCL1C23
Spinal cord layer 2 C2ipsiSCL2C23
Ventral horn C2ipsiVHC2-0.5
Spinal cord layer 5 C3ipsiSCL5C33
Spinal cord layer 3 C3ipsiSCL3C33
Spinal cord layer 4 C3ipsiSCL4C33
Spinal cord layer 1 C3ipsiSCL1C33
Spinal cord layer 2 C3ipsiSCL2C33
Ventral horn C3ipsiVHC3-0.5
Cervical segment 4ipsiCS42
Spinal cord layer 5 C4ipsiSCL5C43
Spinal cord layer 3 C4ipsiSCL3C43
Spinal cord layer 4 C4ipsiSCL4C43
Spinal cord layer 1 C4ipsiSCL1C43
Spinal cord layer 2 C4ipsiSCL2C43
Ventral horn C4ipsiVHC43
Spinal cord layer 5 C5ipsiSCL5C53
Spinal cord layer 3 C5ipsiSCL3C53
Spinal cord layer 4 C5ipsiSCL4C53
Spinal cord layer 1 C5ipsiSCL1C53
Spinal cord layer 2 C5ipsiSCL2C53
Ventral horn C5ipsiVHC5-0.5
Spinal cord layer 5 C6ipsiSCL5C63
Spinal cord layer 3 C6ipsiSCL3C63
Spinal cord layer 4 C6ipsiSCL4C63
Spinal cord layer 1 C6ipsiSCL1C63
Spinal cord layer 2 C6ipsiSCL2C63
Ventral horn C6ipsiVHC6-0.5
Spinal cord layer 5 C7ipsiSCL5C73
Spinal cord layer 3 C7ipsiSCL3C73
Spinal cord layer 4 C7ipsiSCL4C73
Spinal cord layer 1 C7ipsiSCL1C73
Spinal cord layer 2 C7ipsiSCL2C73
Ventral horn C7ipsiVHC7-0.5
Spinal cord layer 5 C8ipsiSCL5C83
Spinal cord layer 3 C8ipsiSCL3C83
Spinal cord layer 4 C8ipsiSCL4C83
Spinal cord layer 1 C8ipsiSCL1C83
Spinal cord layer 2 C8ipsiSCL2C83
Ventral horn C8ipsiVHC8-0.5
Thoracal segment 1ipsiT1-0.5
Thoracal segment 2ipsiT2-0.5
Intermediolateral cell column pars spinalis T2ipsiIMLST2-0.5
Thoracal segment 3ipsiT3-0.5
Intermediolateral cell column T3ipsiIMLT32
Intermediolateral cell column pars spinalis T3ipsiIMLST3-0.5
Spinal cord layers T3ipsiSCLT32
Thoracal segment 4ipsiT4-0.5
Thoracal segment 5ipsiT53
Thoracal segment 6ipsiT63
Thoracal segment 7ipsiT73
Intermediolateral cell column T7ipsiIMLT7-0.5
Area X T7ipsiSCL10T7-0.5
Dorsal horn T7ipsiDHT7-0.5
Ventral horn T7ipsiVHT7-0.5
Spinal cord layer 9 T7ipsiSCL9T72
Thoracal segment 8ipsiT83
Intermediolateral cell column T8ipsiIMLT8-0.5
Area X T8ipsiSCL10T8-0.5
Dorsal horn T8ipsiDHT8-0.5
Ventral horn T8ipsiVHT8-0.5
Spinal cord layer 9 T8ipsiSCL9T82
Thoracal segment 9ipsiT93
Spinal cord layers L1ipsiSCLL1-0.5
Spinal cord layers L2ipsiSCLL2-0.5
Intermediolateral cell column L4ipsiIMLL4-0.5
Area X L4ipsiSCL10L4-0.5
Dorsal horn L4ipsiDHL4-0.5
Ventral horn L4ipsiVHL4-0.5
Spinal cord layer 9 L4ipsiSCL9L42
Lumbar segment 5ipsiL53
Intermediolateral cell column L5ipsiIMLL5-0.5
Area X L5ipsiSCL10L5-0.5
Dorsal horn L5ipsiDHL5-0.5
Ventral horn L5ipsiVHL5-0.5
Spinal cord layer 9 L5ipsiSCL9L52
Lumbar segment 6ipsiL63
Intermediolateral cell column L6ipsiIMLL6-0.5
Area X L6ipsiSCL10L6-0.5
Dorsal horn L6ipsiDHL6-0.5
Ventral horn L6ipsiVHL6-0.5
Spinal cord layer 9 L6ipsiSCL9L62
Tracheal parasympathetic preganglionic neuronsipsiTPPN4
Parapyramidal nucleuscontraPPy3
Rostroventrolateral reticular nucleuscontraRVL3
Rostroventrolateral reticular nucleus rostral partcontraRVLro3
Medullary reticular nucleus ventral partcontraMdV3
Hypoglossal nucleuscontra12S1
Nucleus of the solitary tractcontraSol2
Dorsal motor nucleus of vaguscontra10-0.5
Dorsal motor nucleus of vagus caudal partcontra10C2
Dorsal motor nucleus of vagus lateral partcontra10L2
Dorsal motor nucleus of vagus medial partcontra10M2
Dorsal motor nucleus of vagus rostral partcontra10R2
Ventral respiratory group rostral partcontraVReGr2.5
Retrotrapezoid nucleuscontraRTN1
Rostral ventral respiratory groupcontraRVRG1
Caudal ventral medulla oblongatacontraCVMeO-0.5
Sympathoexitatory area rostral to ventrolateral medulla contraMeObSe0
Intermediolateral cell column T3contraIMLT32.5
Spinal cord layers L1contraSCLL1-0.5
Spinal cord layers L2contraSCLL2-0.5
Sinoatrial nodeipsiSinoAtri3
Pterygopalatine ganglionipsiAutoPpG-0.5
Ganglia around the heartipsiAutoGHeart3
Ventricle muscle wallipsiOrgsCorVenMyo3
Distal colonipsiOrgsColonDi-10
Brown adipose tissueipsiOrgBAT3
Adrenal glandipsiADRE-10
Interscapular brown fat tissueipsiOrgisBFT-0.5
DiaphragmaipsiMuscDia-0.5
Genioglossus muscleipsiMuscGenioG-0.5
Bulbocavernosus muscleipsiMuscBCV-10
Bulbospongiosus muscleipsiMuscbsp3
Ischiocavernosus muscleipsiMuscicav-10
Musculus levator aniipsiMuscLevAn4
Posterior cricoarytenoid muscleipsiMuscPCA-0.5
Tail muscleipsiMuscTail-10
Femoral bone marrowipsiOrgSkFemM1
OvaryipsiOrgOvar1
CervixipsiOrgUTC-10
Uterine hornipsiOrgUTh-10
Uterus bodyipsiOrgUTB-10
Corpus cavernosumipsiOrgCC3
TestisipsiOrgTest1
KidneyipsiOrgsKid-0.5
Urinary bladderipsiOrgUrBLa3
Trigone of the urinary bladderipsiOrgUrBLaT-10
Genioglossus musclecontraMuscGenioG-0.5
Bulbocavernosus musclecontraMuscBCV-10
Ischiocavernosus musclecontraMuscicav-10
Femoral bone marrowcontraOrgSkFemM1
OvarycontraOrgOvar-0.5
Corpus cavernosumcontraOrgCC2
TestiscontraOrgTest-0.5
KidneycontraOrgsKid-0.5
LungipsiOrgsLung-10
Extrathoracic tracheaipsiOrgsTrasEx-10
Trachea wallipsiOrgsTrasW-0.5

Input from

NameSideAbbr.WeightDetails
Nucleus of DarkschewitschipsiDk1
Dorsal periaqueductal gray column 2ipsiDPAGC21
Caudal periaqueductal gray ventrolateral regionipsiPAGcVL-0.5
Dorsal periaqueductal gray lateral partipsiPAGRLa-0.5
Rostral periaqueductal gray dorsal partipsiPAGRD-0.5
Ventral periaqueductal gray column 5ipsiVPAGC51
Ventrolateral periaqueductal grayipsiVLPAG1
Lateral tegmental areaipsiLTGA-0.5
Caudal lateral tegmental fieldipsiCLTF3
A5 noradrenaline cellsipsiA5-0.5
Barringtons nucleusipsiBar-0.5
Locus coeruleusipsiLC-1
Parabrachial nucleusipsiPB-0.5
Koelliker Fuse nucleusipsiKF-0.5
Subcoeruleus nucleusipsiSubC-0.5
Nucleus of the solitary tract commissural partipsiSolC3
Nucleus of the solitary tract dorsal partipsiSolD3
Nucleus of the solitary tract medial-subpostremal subdivisionipsiSolspM3
Medial preoptic areaipsiMPA1
Dorsomedial hypothalamic nucleusipsiDMHy-0.5
Perifornical hypothalamic area [Preoptic anterior region]ipsiPFxPAR0.5
Lateral zoneipsiLHA-0.5
Lateral hypothalamic areaipsiLH-0.5
Lateral hypothalamic area caudal partipsiLHc0.5
Lateral hypothalamic area dorsal partipsiLHd0.5
Lateral hypothalamic area ventral partipsiLHAvp0.5
Dorsal hypothalamic areaipsiDA-0.5
Dorsomedial hypothalamic areaipsiDMHyA-0.5
Dorsomedial hypothalamic nucleus [Medial zone]ipsiDM0
Periventricular zoneipsiPVZ0
Medial part of the paraventricular hypothalamic nucleus medial parvicellular part [Periventricular zone anterior region]ipsiPaMMP1
Anterior part of the paraventricular hypothalamic nucleus medial parvicellular part [Periventricular zone anterior region]ipsiPaAMP1
Caudally in the paraventricular hypothalamic nucleus lateral parvocellular partipsiLPPaC3
Lateral part of the paraventricular hypothalamic nucleus anterior parvicellular partipsiPaAPL-0.5
Paraventricular hypothalamic nucleus parvocellular divisionipsiPavPo2
Ventral hypothalamic regionipsiVHR-0.5
Perifornical nucleusipsiPeF-0.5
Medial part of the caudal perifornical areaipsiPeFCM0.5
Lateral part of the caudal perifornical areaipsiPeFCL0.5
Zona incertaipsiZI-0.5
Lateral lemniscusipsill-2
Caudo-ventral extension of the intrahypothalamic component of the bed nucleus of the stria terminalisipsiBSTcvih-0.5
Central amygdaloid nucleusipsiCe-0.5
Caudal lateral tegmental fieldcontraCLTF3
Parapyramidal nucleuscontraPPy3
Rostroventrolateral reticular nucleuscontraRVL3
Rostroventrolateral reticular nucleus rostral partcontraRVLro3
Nucleus of the solitary tract commissural partcontraSolC3
Nucleus of the solitary tract dorsal partcontraSolD3
Nucleus of the solitary tract medial-subpostremal subdivisioncontraSolspM3
Dorsomedial hypothalamic nucleuscontraDMHy0
Perifornical hypothalamic area [Preoptic anterior region]contraPFxPAR-0.5
Lateral hypothalamic areacontraLH-0.5
Lateral hypothalamic area dorsal partcontraLHd-0.5
Lateral hypothalamic area ventral partcontraLHAvp-0.5
Dorsomedial hypothalamic nucleus [Medial zone]contraDM0
Periventricular zonecontraPVZ0
Lateral part of the paraventricular hypothalamic nucleus anterior parvicellular partcontraPaAPL-0.5
Perifornical nucleuscontraPeF-0.5
Medial part of the caudal perifornical areacontraPeFCM-0.5
Lateral part of the caudal perifornical areacontraPeFCL-0.5

Key for weights

ValueWeight
-3 unknown
-2 fibers of passage
-1 not clear
-0.5 exists
0 not present
0.5 very light
1 light / sparse
1.5 light / moderate
2 moderate / dense
2.5 moderate / strong
3 strong
4 very strong





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