University of Rostock

Department of Anatomy

Neuroscience Group

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Rat connectome



Superior central raphe nucleus compact subnucleus left


Abbreviation
SCc
Color       
Superior regionsSuperior central raphe nucleus

SynonymsAbbr.Language
Superior central raphe nucleus compact subnucleusSCcEng
Compact subnucleus of superior central raphe nucleus Eng
Centralis superior pars compactaCCLat
Pars compacta nucleus centralis superioris Eng
Superior central nucleus pars compacta Eng

Output to

NameSideAbbr.WeightDetails
Pars compacta nucleus pedunculopontinusipsiPPNpc0
Substantia nigra A9 rostromedial partipsiSNrm-0.5
Ventral tegmental area A10 caudal partipsiVTAcp1
Pedunculopontine tegmental nucleus caudal partipsiPPTgC0
Pedunculopontine tegmental nucleus pars dissipataipsiPPNd0
Dorsomedial hypothalamic nucleusipsiDMHy-0.5
Lateral zoneipsiLHA-0.5
Lateral hypothalamic areaipsiLH3
Lateral hypothalamic area lateral partipsiLHAL-0.5
Lateral hypothalamic area posterior partipsiLHAp-0.5
Lateral hypothalamic area ventrolateral part ventrolateral edgeipsiLHvLe-0.5
Ventrolateral hypothalamic nucleusipsiVLH-0.5
Medial division of the hypothalamusipsiMdH-0.5
Dorsomedial hypothalamic nucleus [Medial zone]ipsiDM3
Posterior hypothalamic areaipsiPHA-0.5
Posterior hypothalamic nucleusipsiPH-0.5
Ventromedial hypothalamic nucleusipsiVMH3
Mammillary bodyipsiCMAM3
Lateral mammillary nucleusipsiLM2
Mammillary nucleus commissural part ventral partipsiMCV3
Mammillary nucleus pars commissuralis dorsalisipsiMCoD3
Mammillary nucleus pars commissuralis posterioripsiMCoP3
Medial mammillary nucleusipsiMMn2
Outermost part of the medial mammillary nucleus bodyipsiOmMMnB-0.5
Medial mammillary nucleus medial partipsiMM-0.5
Medial mammillary nucleus median partipsiMMnm3
Medial mammillary nucleus posterior partipsiMMNp3
Medial mammillary nucleus ventrolateral partipsiMMvL3
Premammillary nucleus dorsal partipsiPMD3
Premammillary nucleus superficial partipsiPMANS-0.5
Supramammillar nucleusipsiSuM1
Parafascicular thalamic nucleusipsiPF-0.5
Ventral medial nucleus of the thalamusipsiVMT-0.5
Basal portion of the ventral complex of thalamic nucleiipsiBVNT-0.5
Zona incertaipsiZI-0.5
Zona incerta medial partipsiZIm3
Superficial part of the cortical amygdaloid nucleusipsiSuCAn-0.5
Superficial part of the medial amygdalaipsiSupMe-0.5
Dorsal edge of the granulocellular part of the rostral interpeduncular nucleusipsiIPRgrd2
Lateral hypothalamic area posterior partcontraLHAp-0.5
Lateral hypothalamic area ventrolateral part ventrolateral edgecontraLHvLe-0.5
Ventrolateral hypothalamic nucleuscontraVLH-0.5
Mammillary bodycontraCMAM2
Lateral mammillary nucleuscontraLM-0.5
Mammillary nucleus pars commissuralis posteriorcontraMCoP0.5
Outermost part of the medial mammillary nucleus bodycontraOmMMnB-0.5
Medial mammillary nucleus dorsomedial partcontraMMdm1
Medial mammillary nucleus posterior partcontraMMNp1
Medial mammillary nucleus ventromedial partcontraMMvm1
Supramammillar nucleuscontraSuM0.5
Parafascicular thalamic nucleuscontraPF-0.5
Ventral medial nucleus of the thalamuscontraVMT-0.5
Zona incertacontraZI-0.5
Superficial part of the cortical amygdaloid nucleuscontraSuCAn-0.5
Superficial part of the medial amygdalacontraSupMe-0.5

Key for weights

ValueWeight
-3 unknown
-2 fibers of passage
-1 not clear
-0.5 exists
0 not present
0.5 very light
1 light / sparse
1.5 light / moderate
2 moderate / dense
2.5 moderate / strong
3 strong
4 very strong





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