University of Rostock

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Rat connectome



Zona incerta medial part left


Abbreviation
ZIm
Color       
Superior regionsZona incerta

SynonymsAbbr.Language
Zona incerta medial partZImEng
Motor part of zona incerta Eng
Zona incerta medial portionZImEng
Medial zona incertaMIZ 
Incertohypothalamic nucleus Eng

SubregionsSide
Rostral portion of the zona incerta medial partleft
Zona incerta medial tipleft

Output to

NameSideAbbr.WeightDetails
Central gray medial partipsiCGMe3
Dorsolateral periaqueductal grayipsiDLPAG2
Lateral periaqueductal grayipsiLPAG3
Ventrolateral periaqueductal grayipsiVLPAG2
Central nucleus of the inferior colliculusipsiCIC-0.5
Ventral tegmental area A10ipsiVTA-0.5
Anterior interposed nucleusipsiAIN1.5
Pontine gray properipsiPGp-0.5
Gigantocellular reticular nucleusipsiGi1
Dorsal raphe nucleusipsiDR3
Dorsal raphe nucleus rostral partipsiDRr1
Central raphe nucleus dorsal partipsiCRNdp1
Central raphe nucleus ventral partipsiCRNvp1
Diagonal band of BrocaipsiDBB-0.5
Nucleus of the horizontal limb of the diagonal bandipsiHDB3
Nucleus of the vertical limb of the diagonal bandipsiVDB1
Medial septal nucleusipsiMS1
Lateral preoptic areaipsiLPO3
Medial preoptic areaipsiMPA1
Median preoptic areaipsiMnPA2
Lateral hypothalamic areaipsiLH3
Anterior hypothalamic areaipsiAHA3
Ventromedial hypothalamic nucleusipsiVMH1
Arcuate nucleus basal partipsiArcb1
Paraventricular hypothalamic nucleus parvicellular part [Periventricular zone anterior region]ipsiPaPc3
Paraventricular hypothalamic nucleusipsiPa-0.5
Supraoptic nucleus [Supraoptic region]ipsiSO1
ThalamusipsiT3
Posterior thalamic nuclear group medial partipsiPoMe-0.5
Posteromedial thalamic nuclei caudal partipsiPOmc-0.5
Posterior thalamic nuclear group medial part rostral portionipsiPoMer-0.5
Reuniens thalamic nucleusipsiRe-0.5
Nucleus reuniens rostral division anterior partipsiREa3
Nucleus reuniens rostral division dorsal partipsiRERd-0.5
Nucleus reuniens rostral division lateral partipsiREl-0.5
Nucleus reuniens rostral division ventral partipsiRERv-0.5
Central part of the nucleus reuniens rostral divisionipsiRERCe-0.5
Dorsolateral funiculusipsidlft-2
Ventral basolateral nucleusipsiBLV-0.5
Posterior basomedial nucleusipsiBMP-0.5
Bed nucleus of the stria terminalisipsiBST0.5
Bed nucleus of the stria terminalis lateral divisionipsiBSTL2
Central amygdaloid nucleusipsiCe2
Interstitial nucleus of the posterior limb of the anterior commissureipsiIPAC0.5
Sublenticular extended amygdalaipsiSLEA1
Globus pallidusipsiGP0.5
Ventral pallidumipsiVP2
Accumbens nucleus shellipsiAcbSh0.5
Parietal association cortexipsiPtA1
Agranular insular cortex layer 5ipsiAIL52
Agranular insular cortex layer 1ipsiAIL12
Agranular insular cortex layer 3ipsiAIL32
Lateral septal nucleusipsiLS2
Cervical segment 1ipsiCS11
Area X C1ipsiSCL10C1-0.5
Spinal cord layer 5 C1ipsiSCL5C1-0.5
Spinal cord layer 4 C1ipsiSCL4C1-0.5
Cervical segment 2ipsiCS21
Area X C2ipsiSCL10C2-0.5
Spinal cord layer 5 C2ipsiSCL5C2-0.5
Spinal cord layer 4 C2ipsiSCL4C2-0.5
Area X C3ipsiSCL10C3-0.5
Spinal cord layer 5 C3ipsiSCL5C3-0.5
Spinal cord layer 4 C3ipsiSCL4C3-0.5
Area X C4ipsiSCL10C4-0.5
Spinal cord layer 5 C4ipsiSCL5C4-0.5
Spinal cord layer 4 C4ipsiSCL4C4-0.5
Area X C5ipsiSCL10C5-0.5
Spinal cord layer 5 C5ipsiSCL5C5-0.5
Spinal cord layer 4 C5ipsiSCL4C5-0.5
Area X C6ipsiSCL10C6-0.5
Spinal cord layer 5 C6ipsiSCL5C6-0.5
Spinal cord layer 4 C6ipsiSCL4C6-0.5
Area X C7ipsiSCL10C7-0.5
Spinal cord layer 5 C7ipsiSCL5C7-0.5
Spinal cord layer 4 C7ipsiSCL4C7-0.5
Area X C8ipsiSCL10C8-0.5
Spinal cord layer 5 C8ipsiSCL5C8-0.5
Spinal cord layer 4 C8ipsiSCL4C8-0.5
Area X T1ipsiSCL10T1-0.5
Spinal cord layer 5 T1ipsiSCL5T1-0.5
Spinal cord layer 4 T1ipsiSCL4T1-0.5
Lumbar segment 1ipsiL13
Intermediomedial cell column L1ipsiIMML1-0.5
Area X L1ipsiSCL10L1-0.5
Spinal cord layer 5 L1ipsiSCL5L1-0.5
Spinal cord layer 4 L1ipsiSCL4L1-0.5
Lumbar segment 2ipsiL23
Intermediomedial cell column L2ipsiIMML2-0.5
Area X L2ipsiSCL10L2-0.5
Spinal cord layer 5 L2ipsiSCL5L2-0.5
Spinal cord layer 4 L2ipsiSCL4L2-0.5
Lumbar segment 3ipsiL33
Intermediomedial cell column L3ipsiIMML3-0.5
Area X L3ipsiSCL10L3-0.5
Spinal cord layer 5 L3ipsiSCL5L3-0.5
Spinal cord layer 4 L3ipsiSCL4L3-0.5
Lumbar segment 4ipsiL43
Intermediomedial cell column L4ipsiIMML4-0.5
Area X L4ipsiSCL10L4-0.5
Spinal cord layer 5 L4ipsiSCL5L4-0.5
Spinal cord layer 4 L4ipsiSCL4L4-0.5
Lumbar segment 5ipsiL53
Intermediomedial cell column L5ipsiIMML5-0.5
Area X L5ipsiSCL10L5-0.5
Spinal cord layer 5 L5ipsiSCL5L5-0.5
Spinal cord layer 4 L5ipsiSCL4L5-0.5
Lumbar segment 6ipsiL63
Intermediomedial cell column L6ipsiIMML6-0.5
Area X L6ipsiSCL10L6-0.5
Spinal cord layer 5 L6ipsiSCL5L6-0.5
Spinal cord layer 4 L6ipsiSCL4L6-0.5
Sacral segment 1ipsiSa13
Sacral segment 2ipsiSa23
Sacral segment 3ipsiSa33
Sacral segment 4ipsiSa43
Dorsolateral periaqueductal graycontraDLPAG1
Lateral periaqueductal graycontraLPAG1
Ventrolateral periaqueductal graycontraVLPAG1
Central nucleus of the inferior colliculuscontraCIC-0.5
Posterior interposed nucleuscontraCERpin2
Dorsal raphe nucleuscontraDR1
Lateral hypothalamic areacontraLH1
Paraventricular hypothalamic nucleus parvicellular part [Periventricular zone anterior region]contraPaPc2
Nucleus reuniens rostral division anterior partcontraREa3
Zona incerta medial partcontraZIm2
Parietal association cortexcontraPtA1
Area X C1contraSCL10C1-0.5
Spinal cord layer 5 C1contraSCL5C1-0.5
Spinal cord layer 4 C1contraSCL4C1-0.5
Area X C2contraSCL10C2-0.5
Spinal cord layer 5 C2contraSCL5C2-0.5
Spinal cord layer 4 C2contraSCL4C2-0.5
Area X C3contraSCL10C3-0.5
Spinal cord layer 5 C3contraSCL5C3-0.5
Spinal cord layer 4 C3contraSCL4C3-0.5
Area X C4contraSCL10C4-0.5
Spinal cord layer 5 C4contraSCL5C4-0.5
Spinal cord layer 4 C4contraSCL4C4-0.5
Area X C5contraSCL10C5-0.5
Spinal cord layer 5 C5contraSCL5C5-0.5
Spinal cord layer 4 C5contraSCL4C5-0.5
Area X C6contraSCL10C6-0.5
Spinal cord layer 5 C6contraSCL5C6-0.5
Spinal cord layer 4 C6contraSCL4C6-0.5
Area X C7contraSCL10C7-0.5
Spinal cord layer 5 C7contraSCL5C7-0.5
Spinal cord layer 4 C7contraSCL4C7-0.5
Area X C8contraSCL10C8-0.5
Spinal cord layer 5 C8contraSCL5C8-0.5
Spinal cord layer 4 C8contraSCL4C8-0.5
Area X T1contraSCL10T1-0.5
Spinal cord layer 5 T1contraSCL5T1-0.5
Spinal cord layer 4 T1contraSCL4T1-0.5
Intermediomedial cell column L1contraIMML1-0.5
Area X L1contraSCL10L1-0.5
Spinal cord layer 5 L1contraSCL5L1-0.5
Spinal cord layer 4 L1contraSCL4L1-0.5
Intermediomedial cell column L2contraIMML2-0.5
Area X L2contraSCL10L2-0.5
Spinal cord layer 5 L2contraSCL5L2-0.5
Spinal cord layer 4 L2contraSCL4L2-0.5
Intermediomedial cell column L3contraIMML3-0.5
Area X L3contraSCL10L3-0.5
Spinal cord layer 5 L3contraSCL5L3-0.5
Spinal cord layer 4 L3contraSCL4L3-0.5
Intermediomedial cell column L4contraIMML4-0.5
Area X L4contraSCL10L4-0.5
Spinal cord layer 5 L4contraSCL5L4-0.5
Spinal cord layer 4 L4contraSCL4L4-0.5
Intermediomedial cell column L5contraIMML5-0.5
Area X L5contraSCL10L5-0.5
Spinal cord layer 5 L5contraSCL5L5-0.5
Spinal cord layer 4 L5contraSCL4L5-0.5
Intermediomedial cell column L6contraIMML6-0.5
Area X L6contraSCL10L6-0.5
Spinal cord layer 5 L6contraSCL5L6-0.5
Spinal cord layer 4 L6contraSCL4L6-0.5

Input from

NameSideAbbr.WeightDetails
Central gray alpha partipsiCGA3
Red nucleusipsiR-0.5
Superior colliculusipsiSC-0.5
Laterodorsal tegmental nucleusipsiLDTg3
Ventral tegmental nucleusipsiVTg3
Ventral tegmental nucleus pars intrafascicularisipsiVTgif3
Ventral tegmental nucleus medioventral partipsiVTgmv3
Lateral cerebellar nucleus rostral partipsiCERLr0.5
Pontine grayipsiPG0
Superior central raphe nucleus compact subnucleusipsiSCc3
Dorsomedial hypothalamic nucleusipsiDMHy-2
Lateral hypothalamic areaipsiLH1
Anterior hypothalamic area posterior partipsiAHAP-0.5
Anterior hypothalamic nucleusipsiAHn1
Anterior part of the anterior hypothalamic nucleusipsiAHna3
Subparaventricular zone ventral partipsiSuPZv2
Suprachiasmatic nucleusipsiSCh1
Incerto hypothalamic areaipsiicHYPO-0.5
Premammillary nucleus dorsal partipsiPMD-0.5
Perifornical nucleus medial partipsiPeFM1
Motor part of the anterior pretectal nucleusipsiAPTmo-0.5
Frontal cortex area 1ipsiFr1-0.5
Auditory regionsipsiAU0
Agranular insular cortex layer 5ipsiAIL52
Agranular insular cortex layer 6ipsiAIL62
Lateral septal nucleus rostral part dorsolateral zoneipsiLSrdl1
Septohypothalamic nucleusipsiSHy-0.5
Lateral cerebellar nucleus rostral partcontraCERLr2
Zona incerta medial partcontraZIm2

Key for weights

ValueWeight
-3 unknown
-2 fibers of passage
-1 not clear
-0.5 exists
0 not present
0.5 very light
1 light / sparse
1.5 light / moderate
2 moderate / dense
2.5 moderate / strong
3 strong
4 very strong





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