University of Rostock

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Rat connectome



Mammillary body left


Abbreviation
CMAM
Color       
Superior regionsDiencephalon

SynonymsAbbr.Language
Regio mamillare  
Regio caudale  
Nucleus corporis mamillaris  
Mammillary nuclei  
Mamillary body  
Mamillary region  
Mammillary hypothalamic nucleus Eng
Pars mammillaris hypothalami  
Mammillary nucleus  
Mammillary complexMAMEng
Mammillary bodyCMAMEng
Corpus mammillareMBOLat

SubregionsSide
Cell sparse capsuleleft
Lateral mammillary nucleusleft
Mammillary body caudal partleft
Mammillary body caudomedial partleft
Mammillary body dorsolateral partleft
Mammillary body dorsomedial partleft
Mammillary body rostrolateral partleft
Mammillary body ventromedial partleft
Mammillary nucleus commissural partleft
Mammillary peduncleleft
Mammillotegmental tractleft
Mammillothalamic tractleft
Medial mammillary nucleusleft
Nucleus mammillaris prelateralisleft
Posterior half of the mammillary bodyleft
Posterior mammillay nucleusleft
Premammillary nucleusleft
Principal mammillary tractleft
Submammillothalamic nucleusleft
Supramammillar nucleusleft
White matter fibers tractus corpus mammillareleft
Capsule around the lateral mammillary nucleusleft
Supramammillary commissureleft
Fiber lamina ventral to the medial mammillary nucleusleft

Output to

NameSideAbbr.WeightDetails
Ventrolateral periaqueductal grayipsiVLPAG0
Medial pontine nucleusipsiMPoN3
Tegmental areaipsiTGA3
Mesopontine tegmental areaipsiTGAm0
Parainterfascicular nucleus of the ventral tegmental areaipsiPIF1
Substantia nigra compact partipsiSNC0
Substantia nigra reticular partipsiSNR0
Ventral tegmental area A10ipsiVTA1
Interfascicular nucleusipsiIF1
Ventral tegmental area anterior partipsiVTAA3
Ventral tegmental area posterior partipsiVTAP3
Parabrachial pigmented nucleusipsiPBP1
Paranigral nucleusipsiPN1
Middle part of the retrorubral fieldipsiRRmi0
Lateral tegmental nucleusipsiLTN0
Midbrain tegmentumipsiTGmi3
Ventral tegmental nucleusipsiVTg3
Ventral tegmental nucleus caudal partipsiVTgCa-0.5
Dorsal tegmental nucleusipsiDTg3
Dorsal tegmental nucleus ventral partipsiDTgV3
Pontine grayipsiPG-0.5
Reticulotegmental nucleusipsiRETn-0.5
Reticulotegmental nucleus of the ponsipsiRtTg3
Pontine nucleus medial partipsiBPNm3
Nucleus of the solitary tract adjacent to the nucleus nervi vagiipsiSola10-0.5
Dorsal motor nucleus of vagusipsi10-0.5
Dorsal raphe nucleusipsiDR0
Linear nucleus of the rapheipsiLIR-0.5
Rostral linear nucleus of the rapheipsiRLi1
Superior central raphe nucleusipsiCS-0.5
Median eminenceipsiME-0.5
Internal zone of the median eminenceipsiiZME0
Median eminence external layeripsiMEeL0
Median eminence middle portion subependymal layeripsiMEmise0
Nucleus of the vertical limb of the diagonal bandipsiVDB-0.5
Medial septal nucleusipsiMS3
Paraventricular hypothalamic nucleusipsiPa3
Lateral mammillary nucleusipsiLM0
Mammillothalamic tractipsimt-2
Medial mammillary nucleusipsiMMn3
Medial mammillary nucleus lateral partipsiML3
Medial mammillary nucleus medial partipsiMM3
Medial mammillary nucleus median partipsiMMnm3
Supramammillar nucleusipsiSuM3
A8 dopamine cells retrorubral group lateral partipsiRRFL0
A8 dopamine cells retrorubral group medial partipsiRRFm2
ThalamusipsiT3
Anterior group of the dorsal thalamusipsiATN3
Anterodorsal thalamic nucleusipsiAD3
Anteromedial thalamic nucleusipsiAM3
Anteroventral thalamic nucleusipsiAV4
Mediodorsal thalamic nucleus lateral partipsiMDL2
Mediodorsal thalamic nucleus posterior partipsiMDP2
Submedius thalamic nucleus lateral partipsiSubL2
Submedius thalamic nucleus posterior partipsiSubPo2
Paraventricular thalamic nucleus anterior partipsiPVA0
Laterodorsal thalamic nucleusipsiLD0
Reticular thalamic nucleusipsiRt-0.5
Lateral habenular nucleusipsiLHb1
Intermediate lobe of pituitaryipsiIPit0
Posterior lobe of pituitaryipsiPPit0
Internal capsuleipsiic0
Bed nucleus of the stria terminalis dorsal nucleusipsiBSTd-0.5
StriatumipsiSTR-0.5
Subthalamic nucleusipsiSTh1
HippocampusipsiHIPP1
Pyramidal cell layer of the hippocampusipsiPy0
Lateral entorhinal cortexipsiLEnt1
Medial entorhinal cortexipsiMEnt1
Perirhinal cortexipsiA350.5
Ectorhinal cortexipsiA361
Postrhinal cortexipsiPOR1
Olfactory bulb A16ipsiMOB-0.5
Lateral septal nucleusipsiLS-0.5
Mid-lateral septumipsimiLS3
Septofimbrial nucleusipsiSFi-0.5
Cervical segment 2ipsiCS20
Thoracal segment 8ipsiT80
Lumbar segment 1ipsiL10
Lumbar segment 6ipsiL60
Sacral segment 4ipsiSa40
Ventral tegmental area A10contraVTA0
Lateral tegmental nucleuscontraLTN0
Dorsal tegmental nucleuscontraDTg0
Dorsal raphe nucleuscontraDR0
Medial mammillary nucleuscontraMMn3
Medial mammillary nucleus medial partcontraMM3
Medial mammillary nucleus median partcontraMMnm3
Anterodorsal thalamic nucleuscontraAD3
Laterodorsal thalamic nucleuscontraLD0
Pyramidal cell layer of the hippocampuscontraPy0

Input from

NameSideAbbr.WeightDetails
Caudal midbrainipsicMEC1
Central grayipsiCG3
Central gray alpha partipsiCGA3
Central gray lateral partipsiCGL3
Central gray pons partipsiCGP-0.5
Central gray pons part pars alphaipsiSGCa1
Central gray dorsolateral partipsiCGDL-0.5
Interfascicular nucleusipsiIF-0.5
Ventral tegmental area anterior partipsiVTAA3
Ventral tegmental area posterior partipsiVTAP3
Caudal linear nucleus of the rapheipsiCLi-0.5
Laterodorsal tegmental nucleusipsiLDTg3
Ventral tegmental nucleusipsiVTg4
Ventral tegmental nucleus central partipsiVTgC-0.5
Ventral tegmental nucleus peripheral partipsiVTgp-0.5
Ventral tegmental nucleus ventral partipsiVTgv-0.5
Dorsal tegmental nucleusipsiDTg3
Dorsal tegmental nucleus ventral partipsiDTgV-0.5
Dorsolateral humpipsiCERcndl0
Anterior interposed nucleusipsiAIN0
Posterior interposed nucleusipsiCERpin0
Lateral cerebellar nucleusipsiCERL0
Medial cerebellar nucleusipsiMed0
A5 noradrenaline cellsipsiA50.5
Locus coeruleusipsiLC1
Medullary reticular nucleus dorsal partipsiMdDd-0.5
Subcoeruleus nucleus dorsal partipsiSubCD-0.5
Principal sensory trigeminal nucleusipsiPr52
Spinal trigeminal nucleus interpolar partipsiSp5I2
Spinal trigeminal nucleus oral partipsiSp5O2
Trigeminal subnucleus caudalisipsi5SSC2
Raphe nucleiipsiRAN-0.5
Dorsal raphe nucleusipsiDR1
Linear nucleus of the rapheipsiLIR-0.5
Median raphe nucleusipsiMnR3
Superior central raphe nucleusipsiCS3
Superior central raphe nucleus compact subnucleusipsiSCc3
Nucleus of the horizontal limb of the diagonal bandipsiHDB3
Lateral part of the nucleus of the horizontal limb of the diagonal bandipsiLPHDB0
Nucleus of the vertical limb of the diagonal bandipsiVDB2
Nucleus of the vertical limb of the diagonal band lateral partipsiVDBL2
Medial septal nucleusipsiMS0
Medial preoptic areaipsiMPA-0.5
Dorsomedial hypothalamic nucleusipsiDMHy-2
Lateral hypothalamic areaipsiLH0
Lateral hypothalamic area perifornical partipsiPFx0
Anterior hypothalamic areaipsiAHA-0.5
Dorsomedial hypothalamic nucleus [Medial zone]ipsiDM0
Dorsomedial hypothalamic nucleus dorsomedial partipsiDMDM0
Posterior hypothalamic nucleus caudal partipsiPHCa0
Posterior hypothalamic nucleus rostral partipsiPHRo1
Lateral part of ventral subparaventricular zoneipsiSuPZvL2
Subparaventricular zone ventromedial partipsiSuPZvm3
Subparaventricular zone dorsomedial partipsiSuPZdm2
Subparaventricular zone dorsolateral partipsiSuPZdL2
Ventromedial hypothalamic nucleusipsiVMH-0.5
Ventromedial hypothalamic nucleus posterior partipsiVMHP-2
Ventromedial hypothalamic nucleus ventrolateral partipsiVMHVL1
Suprachiasmatic nucleusipsiSCh-0.5
Suprachiasmatic nucleus ventrolateral partipsiSCnVL0
Supraoptic nucleus [Supraoptic region]ipsiSO-0.5
Premammillary nucleus dorsal partipsiPMD-2
Premammillary nucleus ventral partipsiPMV-2
Anterior group of the dorsal thalamusipsiATN2.5
Reuniens thalamic nucleusipsiRe1
Lateral habenular nucleusipsiLHb0
Posterolateral cortical nucleusipsiPLCo1
Accumbens nucleusipsiAc0
Caudate putamenipsiCPu-0.5
Subthalamic nucleusipsiSTh1
Bed nucleus of the anterior commissureipsiBAC0
Anterior hippocampal continuationipsiAHCC-0.5
Anterior hippocampal continuation deep pyramidal layeripsiAHCCdp-0.5
Dorsal one half of the deep pyramidal layer of the anterior hippocampal continuationipsiAHCCdpdh-0.5
Field CA1 of hippocampus medial partipsiCA1m-0.5
SubiculumipsiS-0.5
Subiculum dorsal partipsiSd2
Subiculum dorsal distal partipsiSdd3
Subiculum dorsal proximal partipsiSdp-0.5
Subiculum ventral partipsiSv3
Pyramidal cell layer of the hippocampusipsiPy0
Indusium griseumipsiIG-0.5
Presubiculum deep layersipsiPrSDL2
ParasubiculumipsiPaS-0.5
Ventral parasubiculumipsiPaSV-0.5
Retrosplenial granular a cortex middle part layer 2ipsiRSGaMiL20.5
Retrosplenial granular a cortex middle part layer 3ipsiRSGaMiL30.5
Retrosplenial granular a cortex middle part layer 4ipsiRSGaMiL40.5
Retrosplenial granular a cortex middle part layer 5ipsiRSGaMiL50.5
Retrosplenial granular a cortex middle part layer 6ipsiRSGaMiL60.5
Retrosplenial granular b cortex ventral part layer 5ipsiRSGbvL5-0.5
Retrosplenial granular cortex b region rostrocaudal middle layersipsiRSGbrcmL2
Cingulate cortex area 1 caudal partipsiCg1c0
Cingulate cortex area 2 caudal partipsiCg2c0
Prelimbic cortexipsiPrL1
Prelimbic cortex dorsal partipsiPrLd0.5
Prelimbic cortex ventral partipsiPrLv1
Infralimbic cortexipsiIL2
Frontal cortex area 2ipsiFr20
Medial orbital cortexipsiMO0
Ventral orbital cortexipsiVO0
Interpeduncular nucleusipsiIP0
Septal regionipsiSER-0.5
Dorsal medial septumipsiDMS0
Dorsolateral septumipsiDLSER0
Lateral septal nucleusipsiLS-0.5
Ventrally lateral septal nucleus rostral part medial zoneipsiLSrmV-0.5
Lateral septal nucleus mediolateral partipsiLSML-0.5
Septohypothalamic nucleusipsiSHy3
Ventrolateral septal regionipsiVLSER0
Area X C1ipsiSCL10C11
Spinal cord layer 3 C1ipsiSCL3C11
Spinal cord layer 4 C1ipsiSCL4C12
Spinal cord layer 1 C1ipsiSCL1C12
Spinal cord layer 2 C1ipsiSCL2C12
Area X C2ipsiSCL10C21
Spinal cord layer 3 C2ipsiSCL3C21
Spinal cord layer 4 C2ipsiSCL4C22
Spinal cord layer 1 C2ipsiSCL1C22
Spinal cord layer 2 C2ipsiSCL2C22
Caudal midbraincontracMEC1
Central graycontraCG2
Central gray alpha partcontraCGA2
Central gray lateral partcontraCGL1
Central gray pons part pars alphacontraSGCa-0.5
Laterodorsal tegmental nucleuscontraLDTg2
Ventral tegmental nucleuscontraVTg2
Dorsal tegmental nucleuscontraDTg0
Dorsal tegmental nucleus ventral partcontraDTgV-0.5
Dorsolateral humpcontraCERcndl0
Anterior interposed nucleuscontraAIN0
Posterior interposed nucleuscontraCERpin0
Lateral cerebellar nucleuscontraCERL1
Medial cerebellar nucleuscontraMed0
A5 noradrenaline cellscontraA50.5
Locus coeruleuscontraLC0.5
Principal sensory trigeminal nucleuscontraPr52
Spinal trigeminal nucleus interpolar partcontraSp5I2
Spinal trigeminal nucleus oral partcontraSp5O2
Trigeminal subnucleus caudaliscontra5SSC2
Dorsal raphe nucleuscontraDR-0.5
Superior central raphe nucleus compact subnucleuscontraSCc2
Ventromedial hypothalamic nucleus ventrolateral partcontraVMHVL0.5
Subiculum ventral partcontraSv-0.5
Pyramidal cell layer of the hippocampuscontraPy0
Ventral parasubiculumcontraPaSV-0.5
Lateral septal nucleus mediolateral partcontraLSML-0.5
Area X C1contraSCL10C12
Spinal cord layer 3 C1contraSCL3C12
Spinal cord layer 4 C1contraSCL4C12
Spinal cord layer 1 C1contraSCL1C12
Spinal cord layer 2 C1contraSCL2C12
Area X C2contraSCL10C22
Spinal cord layer 3 C2contraSCL3C22
Spinal cord layer 4 C2contraSCL4C22
Spinal cord layer 1 C2contraSCL1C22
Spinal cord layer 2 C2contraSCL2C22

Key for weights

ValueWeight
-3 unknown
-2 fibers of passage
-1 not clear
-0.5 exists
0 not present
0.5 very light
1 light / sparse
1.5 light / moderate
2 moderate / dense
2.5 moderate / strong
3 strong
4 very strong





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