University of Rostock

Department of Anatomy

Neuroscience Group

  Homepage

 Staff

 neuroVIISAS

 Rat connectome

 Other connectomes

 Neuroimaging

 Neurodegeneration

 Neuroproteomics

 Students

 Links

 Publications

Rat connectome



Lateral zone left


Abbreviation
LHA
Color       
Superior regionsHypothalamic zones

SynonymsAbbr.Language
Lamina hypothalamica lateralisLZ 
Hypothalamus oralis  
Hypothalamus pars supraoptica  
Lateral zone of the hypothalamus  
Lateral hypothalamic zone  
Lateral hypothalamic area Eng
Lateral zoneLHAEng
Lateral region  

SubregionsSide
Anterior lateral arealeft
Anterior region lateral zoneleft
Area periventricularis hypothalamica communis [Regio hypothalamus oralis]left
Area periventricularis hypothalamica dorsalisleft
Gemini hypothalamic nucleusleft
Lateral hypothalamic arealeft
Lateral hypothalamic substantia innominata transition arealeft
Lateral intermediate arealeft
Lateral preoptic area 2left
Lateral zone anterior levelleft
Lateral zone mammillary levelleft
Lateral zone preoptic levelleft
Lateral zone tuberal levelleft
Lateroanterior hypothalamic nucleusleft
Magnocellular nucleus of the lateral hypothalamusleft
Magnocellular preoptic nucleus 2left
Paraterete nucleusleft
Posterolateral hypothalamusleft
Reticular lateral arealeft
Rostrolateral hypothalamusleft
Striohypothalamic nucleusleft
Supramammillar nucleus 2left
Supraoptic nucleus [Lateral zone]left
Terete hypothalamic nucleusleft
Tuberal division of the lateral hypothalamic arealeft
Tuberal nucleusleft
Ventral surface of the brain just lateral to the supraoptic nucleusleft
Ventrolateral hypothalamic nucleusleft
Lateral hypothalamus adjacent to the ventral tuberomammillary nucleusleft
Lateral zone at the lateral optic chiasmleft
Lateral zone of the rostal hypothalamusleft
Lateral hypothalamic area lateral to the fornixleft
Lateral hypothalamic area medial caudal to the fornixleft
Lateral hypothalamic area lateral and dorsal to the fornixleft
Lateral zone at level of the paraventricular nucleus of the hypothalamus magnocellular division anterior magnocellular partleft
Lateral zone at level of the paraventricular hypothalamic nucleus magnocellular divsion posterior partleft
Lateral zone between PaAMa and PaMagPleft
Lateral zone lateralmost partleft
Lateral hypothalamic area adjacent to the ventromedial hypothalamic nucleusleft
Cluster in the lateral hypothalamic area between fornix and internal capsuleleft
Lateral hypothalamic area fusiform neuronesleft
Dorsolateral hypothalamic arealeft
Lateral zone of the hypothalamus peripeduncular regionleft
Around lateral hypothalaic arealeft
Around posterolateral hypothalamusleft

Output to

NameSideAbbr.WeightDetails
Central grayipsiCG3
Central gray dorsal partipsiCGD-0.5
Center of the dorsal central grayipsiCGCD0
Central gray dorsal peripheral partipsiCGDp0
Central gray dorsomedialipsiCGDM0
Central gray lateral partipsiCGL-0.5
Central gray lateral dorsal peripheral partipsiCGLDp0
Central gray lateral dorsal central partipsiCGLDc0
Central gray lateral ventral partipsiCGVD1
Central gray lateral ventral peripheral partipsiCGVDp3
Central gray lateral ventral central partipsiCGVDc3
Central gray mesencephalic part lateral borderipsiCGMLb-0.5
Central gray pons partipsiCGP2
Ventrolateral midbrain central grayipsiCGMeVL-0.5
Central gray dorsolateral peripheral partipsiCGDLp0
Central gray dorsolateral central partipsiCGDLc0
Central gray periventricular partipsiCGpv0
Nuclei of the lateral lemniscusipsiNLL0
Oculomotor nucleusipsi3-0.5
Dorsolateral periaqueductal grayipsiDLPAG-0.5
Lateral periaqueductal grayipsiLPAG2
Periaqueductal gray caudal partipsiPAGc-0.5
Periaqueductal gray rostral partipsiPAGR3
Ventral periaqueductal grayipsiVPAG-0.5
Ventrolateral periaqueductal grayipsiVLPAG2
Inferior colliculusipsiICOL1
Superior colliculusipsiSC-0.5
Commissure of the superior colliculusipsicsc-2
Intermediate gray layer of the superior colliculusipsiInG-0.5
Central tegmental fieldipsiTGAC3
Substantia nigra compact partipsiSNC3
Substantia nigra reticular partipsiSNR2
Ventral tegmental area A10ipsiVTA3
Ventral tegmental area A10 caudal partipsiVTAcp-0.5
Ventral tegmental area rostral partipsiVTAR-0.5
Ventrolateral tegmental areaipsiVLTg1
Lateral tegmental nucleus caudal aspect of catecholaminergic cell columnipsiLTNcc-0.5
Lateral tegmental nucleus medial aspect of C1 area of RVLipsiLTNmc1rvL-0.5
Laterodorsal tegmental nucleusipsiLDTg-0.5
Dorsal tegmental nucleus lateral partipsiDLTN-0.5
Surrounding ventral tegmental nucleusipsiTGAGs-0.5
Pedunculopontine tegmental nucleusipsiPPTg0
Edinger Westphal nucleusipsiEW-1
Stratum marginale periventriculareipsiSmpv-0.5
A5 noradrenaline cellsipsiA51
Barringtons nucleusipsiBar3
Locus coeruleusipsiLC2
Nucleus incertus pars compactaipsiNIc1
Nucleus incertus pars dissipataipsiNId2
Parapyramidal nucleusipsiPPy-0.5
Pontine sublaterodorsal nucleusipsiPsLdn3
Ventral region of the nucleus tegmentopontinusipsiPTFV-0.5
Prepositus nucleusipsiPr1
Rostroventrolateral reticular nucleusipsiRVL-0.5
Rostroventrolateral reticular nucleus rostral partipsiRVLro-0.5
Mesencephalic reticular formationipsiMRF3
Pontine reticular nucleus oral partipsiPnO3
Pontine reticular nucleus caudal partipsiPNC-0.5
Pontine reticular nucleus caudal part ventral partipsiPNCcv3
Cuneiforme nucleusipsiCnF2
Parabrachial nucleusipsiPB-0.5
Lateral parabrachial nucleusipsiLPB3
Parabrachial nucleus central lateral partipsiPBCeL3
Parabrachial nucleus medialipsiPBnMe3
Parabrachial nucleus ventrolateral partipsiPBveLa3
Gigantocellular reticular nucleus alpha partipsiGiA-0.5
Lateral reticular nucleusipsiLRt0
Medullary reticular nucleus ventral partipsiMdV-0.5
Lateral part of the medullary reticular formationipsiMdDL-0.5
Parvicellular reticular nucleusipsiPCRt3
Dorsal parvocellular reticular formationipsiDPCRt3
Ambiguus nucleusipsiAmb1
Ambiguus nucleus caudal partipsiAmbc-0.5
Area postremaipsiAP-0.5
Hypoglossal nucleusipsi12S-0.5
Mesencephalic trigeminal nucleus caudal poleipsiMe5cp-0.5
Spinal trigeminal nucleus caudal partipsiSp5C0.5
Spinal trigeminal nucleus dorsal partipsiSp5ncD3
Pars zonale of the spinal trigeminal nucleusipsiSp5ncZ-0.5
Trochlear nucleusipsi4-0.5
Nucleus of the solitary tractipsiSol4
Lateral part of caudal solitary tract nucleusipsiSolcaL-0.5
Nucleus of the solitary tract commissural partipsiSolC4
Nucleus of the solitary tract gelatinous partipsiSolG2
Nucleus of the solitary tract medial partipsiSolM4
Medio-caudal nucleus of the solitary tractipsiSolmc-0.5
Nucleus of the solitary tract at the lateral edge of the area postremaipsiSolLAP2
Parvicellular nucleus of the nucleus of the solitary tractipsiSolpar-0.5
Dorsal motor nucleus of vagusipsi103
Dorsal raphe nucleusipsiDR3
Median raphe nucleusipsiMnR3
Superior central raphe nucleusipsiCS1
Pontine raphe nucleusipsiPnR1
Raphe magnus nucleusipsiRMg1
Raphe obscurus nucleusipsiROb-0.5
Raphe pallidus nucleusipsiRPa-0.5
Raphe pallidus nucleus rostral partipsiRParo1
Ventral lateral medulla oblongataipsiMVL1
Inferior oliveipsiIO1
Periolivary area between superior olivary nucleus and descending root of the facial nerveipsiPOAd7fn-0.5
Retrotrapezoid nucleusipsiRTN3
Ventral surface of the medulla oblongataipsiVSMeO-0.5
Spinomedullary junctionipsiSMJ3
Median eminenceipsiME0
Median eminence external layeripsiMEeL1
Diagonal band of BrocaipsiDBB3
Medial septal nucleusipsiMS3
Substantia innominata caudal aspectipsiSIc3
Substantia innominata pars subcommissuralisipsiSIsc3
Substantia innominata rostral aspectipsiSIr1
Substantia innominata sublenticular partipsiSIS1
Lateral preoptic areaipsiLPO3
Medial preoptic areaipsiMPA2
Magnocellular preoptic nucleusipsiMCPO1
Medial preoptic nucleusipsiMPO3
Median preoptic nucleusipsiMnPO0
Ventrolateral preoptic nucleusipsiVLPO2
Ventromedial preoptic nucleusipsiVMPO-0.5
Vascular organ of the lamina terminalisipsiVOLT3
Dorsomedial hypothalamic nucleusipsiDMHy1
Dorsomedial hypothalamic nucleus non-compact partipsiDMHyncp1
Lateral zoneipsiLHA2
Lateral hypothalamic area at the level of the caudal half to the ventromedial hypothalamic nucleusipsiLHAaCVMH1
Anterior hypothalamic areaipsiAHA2
Anterior hypothalamic area posterior partipsiAHAP2
Tuberal areaipsiTA-0.5
Ventromedial hypothalamic nucleusipsiVMH1
Arcuate nucleusipsiArc1
Nucleus paraventricularis [Periventricular zone anterior region]ipsiPaPAR3
Paraventricular hypothalamic nucleus medial parvicellular part [Periventricular zone anterior region]ipsiPaMP1
Paraventricular hypothalamic nucleus posterior part [Periventricular zone anterior region]ipsiPaPo2
Paraventricular hypothalamic nucleus medial portion of the posterior partipsiPaMePo1
Paraventricular hypothalamic nucleus surrounding area [Periventricular zone anterior region]ipsiPaSur4
Nucleus paraventricularis rostral caudal levelipsiPaPARrc-0.5
Paraventricular hypothalamic nucleusipsiPa4
Border of the posterior magnocellular and medial parvocellular subdivision at mid-level of the rostrocaudal extentipsiPabPmmp1
Mid paraventricular hypothalamic nucleusipsiMiPa-0.5
Mid paraventricular hypothalamic nucleus medial portionipsiMiPaMe2
Paraventricular hypothalamic nucleus magnocellular division posterior part caudal levelipsiPaMagPC1
Paraventricular hypothalamic nucleus dorsal parvocellular divisionipsiPavPoD1
Paraventricular hypothalamic nucleus periventricular partipsiPapv1
Paraventricular nucleus anterior partipsiPaan4
Paraventricular nucleus dorsal edgeipsiPaDoE2
Paraventricular nucleus dorsal most portionipsiPaDom4
Paraventricular nucleus medial part at mid paraventricular hypothalamic nucleus levelipsiPamemi2
Paraventricular nucleus medial part at posterior paraventricular hypothalamic nucleus levelipsiPamepo2
Peri-paraventricular hypothalamic nucleusipsiPPa4
Subparaventricular zone of the hypothalamusipsiSPa-0.5
Premammillary nucleus dorsal partipsiPMD3
Premammillary nucleus ventral partipsiPMV0
Anterior group of the dorsal thalamusipsiATN2
Dorsal part of the lateral geniculate complexipsiLGd1
Central medial thalamic nucleusipsiCM1
Centrolateral thalamic nucleusipsiCL2
Rhomboid thalamic nucleusipsiRh1
Posterior thalamic nuclear groupipsiPo2
Mediodorsal thalamic nucleusipsiMD2
Paratenial thalamic nucleusipsiPT-0.5
Paraventricular thalamic nucleusipsiPV2
Reuniens thalamic nucleusipsiRe4
Laterodorsal thalamic nucleusipsiLD2
Zona incertaipsiZI1
Zona incerta medial tipipsiZImt4
Lateral habenular nucleusipsiLHb4
Lateral habenular nucleus lateral partipsiLHbL3
Lateral habenular nucleus medial partipsiLHbM1
Lateral habenular nucleus oval subnucleusipsiLHbos0
Medial habenular nucleusipsiMHb0
Pretectal regionipsiPRT-0.5
Pituitary glandipsiPIT3
Stria medullaris of the thalamusipsism1
Amygdaloid complexipsiAC0
Basolateral amygdaloid nucleusipsiBL0.5
Anterior basolateral nucleusipsiBLA0.5
Posterior basolateral nucleusipsiBLP0.5
Lateral amygdaloid nucleusipsiLA0
Bed nucleus of the stria terminalisipsiBST3
Bed nucleus of the stria terminalis caudal part caudoventral regionipsiBSTCacv2
Bed nucleus of the stria terminalis caudal part perifornical regionipsiBSTCapf2
Bed nucleus of the stria terminalis intraamygdaloid divisionipsiBSTIA0
Bed nucleus of the stria terminalis lateral divisionipsiBSTL2
Bed nucleus of the stria terminalis medial divisionipsiBSTM2
Central amygdaloid nucleusipsiCe0
Medial amygdaloid nucleusipsiMe0
Amygdalohippocampal areaipsiAHi0
Globus pallidusipsiGP1
Dorsal striatumipsiCPud0.5
Subthalamic nucleus medial partipsiSThM-0.5
HippocampusipsiHIPP1
Dentate gyrusipsiDG1
Field CA1 of hippocampusipsiCA10
Entorhinal cortexipsiEnt1
Lateral entorhinal cortexipsiLEnt1
Medial entorhinal cortexipsiMEnt1
Frontal association cortexipsiFrA-0.5
Frontal cortex area 2ipsiFr21
Perirhinal cortexipsiA350.5
Ectorhinal cortexipsiA361
Postrhinal cortexipsiPOR1
Primary visual cortexipsiV12
Lateral extrastriate cortexipsiVISxL2
Nucleus of the posterior commissureipsiPCom3
Precommissural nucleusipsiPrC1
Medial geniculate nucleus dorsal part ventral partipsiMGDV1
Anterior olfactory nucleusipsiAON-0.5
Olfactory tubercleipsiTuO-0.5
Septal regionipsiSER3
Lateral septal nucleusipsiLS-0.5
Lateral septal nucleus caudal partipsiLSc3
Lateral septal nucleus dorsal partipsiLSD3
Lateral septal nucleus intermediate partipsiLSI2
Lateral septal nucleus intermediate part ventral subdivisionipsiLSVIV2
Dorsolateral subdivision of the lateral septal nucleus intermediate partipsiLSIDL1
Dorsomedial subdivision of the lateral septal nucleus intermediate partipsiLSIDM1
Lateral subdivision of the lateral septal nucleus intermediate partipsiLSIL2
Medial subdivision of the lateral septal nucleus intermediate partipsiLSIm1
Lateral septal nucleus ventral partipsiLSV1
Septofimbrial nucleusipsiSFi3
Border between medial and lateral septumipsiSERbML-0.5
Stria terminalisipsist2
Intermediolateral cell columnipsiIML-0.5
Spinal cord layers C1ipsiSCLC10.5
Cervical segment 2ipsiCS23
Spinal cord layers C8ipsiSCLC8-0.5
Cervical spinal cord layer 10ipsiCSegL10-0.5
Cervical spinal cord layer 5ipsiCSegL5-0.5
Cervical spinal cord layer 1ipsiCSegL1-0.5
Intermediolateral cell column T1ipsiIMLT14
Spinal cord layers T1ipsiSCLT1-0.5
Intermediolateral cell column T2ipsiIMLT24
Intermediolateral cell column pars spinalis T2ipsiIMLST2-0.5
Spinal cord layers T2ipsiSCLT2-0.5
Intermediolateral cell column T3ipsiIMLT34
Spinal cord layers T3ipsiSCLT3-0.5
Intermediolateral cell column T4ipsiIMLT44
Spinal cord layers T4ipsiSCLT4-0.5
Intermediolateral cell column T5ipsiIMLT53
Spinal cord layers T5ipsiSCLT5-0.5
Intermediolateral cell column T6ipsiIMLT63
Intermediolateral cell column T7ipsiIMLT73
Spinal cord layers T7ipsiSCLT7-0.5
Thoracal segment 8ipsiT83
Intermediolateral cell column T8ipsiIMLT83
Intermediolateral cell column T9ipsiIMLT93
Spinal cord layers T9ipsiSCLT9-0.5
Intermediolateral cell column T10ipsiIMLT103
Intermediolateral cell column T11ipsiIMLT112
Spinal cord layers T11ipsiSCLT11-0.5
Intermediolateral cell column T12ipsiIMLT122
Intermediolateral cell column T13ipsiIMLT132
Thoracal segments layer 1ipsiTSegL1-0.5
Thoracal segments layer 2ipsiTSegL2-0.5
Thoracal segments layer 3ipsiTSegL3-0.5
Thoracal segments layer 4ipsiTSegL4-0.5
Thoracal segments layer 5ipsiTSegL5-0.5
Thoracal segments layer 7ipsiTSegL7-0.5
Thoracal segments layer 10ipsiTSegL10-0.5
Thoracal segments ventral hornipsiTSegVH-0.5
Lumbar segment 1ipsiL13
Intermediolateral cell column L1ipsiIMLL12
Dorsolateral nucleus lumbal segment 5ipsiDLNL53
Dorsal horn L5ipsiDHL53
Ventral horn L5ipsiVHL53
Spinal nucleus of the bulbocavernosus lumbal segment 5ipsiBCL53
Lumbar segment 6ipsiL63
Dorsolateral nucleus lumbal segment 6ipsiDLNL63
Dorsal horn L6ipsiDHL63
Ventral horn L6ipsiVHL63
Spinal nucleus of the bulbocavernosus lumbal segment 6ipsiBCL63
Lumbar segments layer 1ipsiLSegL1-0.5
Lumbar segments layer 7ipsiLSegL7-0.5
Lumbar segments layer 8ipsiLSegL8-0.5
Lumbar segments layer 9ipsiLSegL9-0.5
Lumbar segments layer 10ipsiLSegL10-0.5
Sacral segment 1ipsiSa13
Central graycontraCG-0.5
Central gray lateral ventral partcontraCGVD-0.5
Central gray lateral ventral peripheral partcontraCGVDp-0.5
Central gray lateral ventral central partcontraCGVDc-0.5
Central gray pons partcontraCGP-0.5
Dorsolateral periaqueductal graycontraDLPAG-0.5
Lateral periaqueductal graycontraLPAG-0.5
Periaqueductal gray rostral partcontraPAGR-0.5
Ventrolateral periaqueductal graycontraVLPAG-0.5
Central tegmental fieldcontraTGAC-0.5
Ventral tegmental area A10contraVTA-0.5
Ventrolateral tegmental areacontraVLTg-0.5
A5 noradrenaline cellscontraA5-0.5
Barringtons nucleuscontraBar-0.5
Locus coeruleuscontraLC-0.5
Pontine sublaterodorsal nucleuscontraPsLdn0.5
Ventral region of the nucleus tegmentopontinuscontraPTFV1
Pontine reticular nucleus oral partcontraPnO1
Cuneiforme nucleuscontraCnF-0.5
Lateral parabrachial nucleuscontraLPB-0.5
Parabrachial nucleus medialcontraPBnMe-0.5
Dorsal parvocellular reticular formationcontraDPCRt-0.5
Ambiguus nucleus caudal partcontraAmbc-0.5
Mesencephalic trigeminal nucleus caudal polecontraMe5cp-0.5
Spinal trigeminal nucleus dorsal partcontraSp5ncD-0.5
Nucleus of the solitary tractcontraSol-0.5
Lateral part of caudal solitary tract nucleuscontraSolcaL-0.5
Nucleus of the solitary tract commissural partcontraSolC-0.5
Nucleus of the solitary tract gelatinous partcontraSolG-0.5
Nucleus of the solitary tract medial partcontraSolM-0.5
Medio-caudal nucleus of the solitary tractcontraSolmc-0.5
Nucleus of the solitary tract at the lateral edge of the area postremacontraSolLAP-0.5
Dorsal motor nucleus of vaguscontra10-0.5
Dorsal raphe nucleuscontraDR-0.5
Median raphe nucleuscontraMnR-0.5
Raphe magnus nucleuscontraRMg1
Raphe obscurus nucleuscontraROb1
Raphe pallidus nucleuscontraRPa1
Ventral lateral medulla oblongatacontraMVL-0.5
Diagonal band of BrocacontraDBB-0.5
Medial septal nucleuscontraMS-0.5
Substantia innominata pars subcommissuraliscontraSIsc-0.5
Substantia innominata rostral aspectcontraSIr1
Substantia innominata sublenticular partcontraSIS-0.5
Lateral preoptic areacontraLPO-0.5
Medial preoptic areacontraMPA-0.5
Ventrolateral preoptic nucleuscontraVLPO0.5
Dorsomedial hypothalamic nucleuscontraDMHy-0.5
Dorsomedial hypothalamic nucleus non-compact partcontraDMHyncp-0.5
Lateral zonecontraLHA-0.5
Arcuate nucleuscontraArc-0.5
Paraventricular hypothalamic nucleuscontraPa-0.5
Paraventricular nucleus medial partcontraPame2
Premammillary nucleus dorsal partcontraPMD3
Central medial thalamic nucleuscontraCM-0.5
Centrolateral thalamic nucleuscontraCL-0.5
Rhomboid thalamic nucleuscontraRh-0.5
Mediodorsal thalamic nucleuscontraMD-0.5
Paraventricular thalamic nucleuscontraPV-0.5
Zona incertacontraZI-0.5
Lateral habenular nucleuscontraLHb4
Lateral habenular nucleus medial partcontraLHbM0
Lateral habenular nucleus oval subnucleuscontraLHbos0
Stria medullaris of the thalamuscontrasm-0.5
Bed nucleus of the stria terminaliscontraBST-0.5
Bed nucleus of the stria terminalis lateral divisioncontraBSTL-0.5
Bed nucleus of the stria terminalis medial divisioncontraBSTM-0.5
Globus palliduscontraGP1
Ventral medial prefrontal cortexcontravmPFC1
Precommissural nucleuscontraPrC-0.5
Lateral septal nucleus dorsal partcontraLSD-0.5
Lateral septal nucleus intermediate partcontraLSI-0.5
Lateral septal nucleus intermediate part ventral subdivisioncontraLSVIV-0.5
Dorsolateral subdivision of the lateral septal nucleus intermediate partcontraLSIDL-0.5
Dorsomedial subdivision of the lateral septal nucleus intermediate partcontraLSIDM-0.5
Lateral subdivision of the lateral septal nucleus intermediate partcontraLSIL-0.5
Medial subdivision of the lateral septal nucleus intermediate partcontraLSIm-0.5
Lateral septal nucleus ventral partcontraLSV-0.5
Stria terminaliscontrast-0.5
Intermediolateral cell column T1contraIMLT13
Intermediolateral cell column T2contraIMLT23
Intermediolateral cell column T3contraIMLT33
Intermediolateral cell column T4contraIMLT43
Intermediolateral cell column T5contraIMLT52.5
Intermediolateral cell column T6contraIMLT62.5
Intermediolateral cell column T7contraIMLT72.5
Intermediolateral cell column T8contraIMLT82.5
Intermediolateral cell column T9contraIMLT92.5
Intermediolateral cell column T10contraIMLT102.5
Intermediolateral cell column T11contraIMLT112
Intermediolateral cell column T12contraIMLT122
Intermediolateral cell column T13contraIMLT132
Intermediolateral cell column L1contraIMLL12

Input from

NameSideAbbr.WeightDetails
Central gray mesencephalic partipsiCGM3
Central gray pons partipsiCGP3
Central gray pons part pars alphaipsiSGCa1
Ventral nucleus of the lateral lemniscusipsiVLL3
Periaqueductal grayipsiPAG2
Commissural nucleus of the inferior colliculusipsiCom1
Substantia nigra A9ipsiSN-0.5
Ventral tegmental area A10ipsiVTA3
Interfascicular nucleusipsiIF-0.5
Caudal linear nucleus of the rapheipsiCLi-0.5
Peripeduncular nucleusipsiPP3
Laterodorsal tegmental nucleusipsiLDTg-0.5
Ventral tegmental nucleusipsiVTg-0.5
Ventral tegmental nucleus central partipsiVTgC-0.5
Ventral tegmental nucleus peripheral partipsiVTgp-0.5
Ventral tegmental nucleus ventral partipsiVTgv-0.5
Dorsal tegmental nucleus lateral partipsiDLTN2
Dorsal tegmental nucleus ventral partipsiDTgV-0.5
Interstitial nucleus of CajalipsiInC2
Medial cerebellar nucleusipsiMed-0.5
Decussatio of the superior cerebellar peduncleipsixscp-2
Locus coeruleusipsiLC2
Nucleus incertusipsiNI1
Nucleus incertus pars dissipataipsiNId1
Mesencephalic reticular formationipsiMRF2
Pontine reticular nucleusipsiPRN2
Parabrachial nucleusipsiPB-2
Koelliker Fuse nucleusipsiKF2
Lateral parabrachial nucleusipsiLPB2
Lateral parabrachial nucleus external partipsiLPBE2.5
Lateral parabrachial nucleus superior partipsiLPBS3
Parabrachial nucleus medialipsiPBnMe1
Lateral reticular nucleusipsiLRt1
Principal sensory trigeminal nucleus ventrolateral partipsiPr5VL3
Nucleus of the solitary tractipsiSol1
Caudal nucleus of the solitary tract medial partipsiSolcame2
Dorsal raphe nucleusipsiDR3
Median raphe nucleusipsiMnR2
Medial raphe nucleusipsiMeR2
Superior central raphe nucleus compact subnucleusipsiSCc-0.5
Pontine raphe nucleusipsiPnR2
Raphe magnus nucleusipsiRMg1
Diagonal band of BrocaipsiDBB1
Nucleus of the vertical limb of the diagonal band dorsal partipsiVDBDo-0.5
Medial septal nucleusipsiMS1
Substantia innominataipsiSI3
Intermediate hypothalamic cell groupsipsiIHCG1
Lateral preoptic areaipsiLPO3
Medial preoptic areaipsiMPA3
Medial preoptic area dorsolateral partipsiMPADL3
Lateral preoptic nucleusipsiLPN3
Medial preoptic nucleusipsiMPO3
Median preoptic nucleusipsiMnPO3
Vascular organ of the lamina terminalisipsiVOLT0
Dorsomedial hypothalamic nucleusipsiDMHy3
Lateral zoneipsiLHA2
Lateral hypothalamic area posterior partipsiLHAp-0.5
Lateral hypothalamic area rostral partipsiLHro2
Anterior hypothalamic areaipsiAHA2
Anteroventral periventricular nucleus [Anterior hypothalamic area]ipsiAVPe3
Anterior hypothalamic area immediately caudal to the suprachiasmatic areaipsiAHAcSCh-0.5
Anterior hypothalamic nucleusipsiAHn-2
Dorsal hypothalamic areaipsiDA2
Parastriatal nucleusipsiPS3
Posterior hypothalamic areaipsiPHA1
Posterior hypothalamic nucleusipsiPH3
Tuberal areaipsiTA-0.5
Ventromedial hypothalamic nucleusipsiVMH1.5
Ventromedial hypothalamic nucleus lateral marginipsiVMHLm2
Ventromedial hypothalamic nucleus ventrolateral partipsiVMHVL1
Arcuate nucleusipsiArc0.5
Arcuate nucleus medial partipsiArcM0.5
Arcuate nucleus ventrolateral partipsiArcVL3
Arcuate nucleus dorsomedial partipsiArcdm3
Nucleus paraventricularis [Periventricular zone anterior region]ipsiPaPAR-0.5
Paraventricular hypothalamic nucleus anterior parvicellular part [Periventricular zone anterior region]ipsiPaAP-0.5
Ventral part of the paraventricular hypothalamic nucleus anterior parvicellular part [Periventricular zone anterior region]ipsivPaAP-0.5
Adjacent to the ventral part of the paraventricular hypothalamic nucleus anterior parvicellular part [Periventricular zone anterior region]ipsiPaAPav-0.5
Paraventricular hypothalamic nucleusipsiPa2
Anterior part of periventricular parvocellular subdivision of paraventricular hypothalamic nucleusipsiPVPapvA-0.5
Preoptic periventricular nucleusipsiPePO3
Suprachiasmatic nucleusipsiSCh1
Suprachiasmatic nucleus dorsal divisionipsiSChd-0.5
Suprachiasmatic nucleus dorsomedial partipsiSCnDM0
Suprachiasmatic nucleus ventrolateral partipsiSCnVL0
Region dorsal to suprachiasmatic nucleusipsiSChDT-0.5
Suprachiasmatic preoptic nucleusipsiPSCh3
Supraoptic nucleus [Supraoptic region]ipsiSO1
Perifornical nucleusipsiPeF3
Retrochiasmatic area immediately caudal to the suprarchiasmatic areaipsiRChcSCh-0.5
Anterior group of the dorsal thalamusipsiATN-0.5
Anterodorsal thalamic nucleusipsiAD-3
Anteroventral thalamic nucleusipsiAV-3
Paraventricular thalamic nucleusipsiPV1
Reuniens thalamic nucleusipsiRe1
Subfornical organipsiSFO3
Zona incertaipsiZI2
Nucleus of the fields of ForelipsiF2
Lateral habenular nucleusipsiLHb2
RetinaipsiRET2
Lateral amygdaloid nucleusipsiLA2
Bed nucleus of the stria terminalisipsiBST3
Bed nucleus of the stria terminalis fusiform partipsiFu3
Bed nucleus of the stria terminalis oval nucleusipsiBSTo1
Bed nucleus of the stria terminalis dorsal nucleusipsiBSTd3
Bed nucleus of the stria terminalis ventral partipsiBNSTv3
Bed nucleus of the stria terminalis ventral tipipsiBNSTvt3
Central amygdaloid nucleusipsiCe3
Medial amygdaloid nucleus anterior partipsiMeAn2
Ventral pallidumipsiVP1
Accumbens nucleusipsiAc3
Accumbens nucleus shellipsiAcbSh3
Parasubthalamic nucleusipsiPSTh1
HippocampusipsiHIPP0
Subiculum ventral partipsiSv1
Entorhinal cortexipsiEnt1
Prelimbic cortexipsiPrL2
Infralimbic cortexipsiIL2
Insular cortexipsiICX-0.5
Dysgranular insular cortexipsiDI1
Prefrontal cortexipsiPFC1
Medial prefrontal cortexipsimPFC2
Intergeniculate leaf rostrocaudal partipsiIGLR3
Olfactory tubercleipsiTuO-0.5
Dorsal septumipsiDSER2
Lateral septal nucleusipsiLS3
Lateral septal nucleus caudal partipsiLSc1
Lateral septal nucleus dorsal partipsiLSD-2
Lateral septal nucleus dorsolateral partipsiLSDL-0.5
Lateral septal nucleus intermediate partipsiLSI-2
Lateral septal nucleus ventral partipsiLSV-2
Lateral septal nucleus ventrolateral partipsiLSvl-0.5
Lateral septal nucleus intermediolateral partipsiLSiL-0.5
Lateral septal nucleus mediolateral partipsiLSML-0.5
Anteroposterior extension of the lateral septal nucleusipsiLSap-2
Ventroposterior extension of the lateral septal nucleusipsiLSvp-2
Septofimbrial nucleusipsiSFi1
Lateral spinal nucleusipsiMESLn-0.5
Spinal cord lamina 10ipsiMESL10-0.5
Cervical segmentsipsiCSeg-0.5
Lumbar segmentsipsiLSeg-0.5
Central gray mesencephalic partcontraCGM-0.5
Central gray pons partcontraCGP-0.5
Ventral nucleus of the lateral lemniscuscontraVLL-0.5
Periaqueductal graycontraPAG1
Commissural nucleus of the inferior colliculuscontraCom1
Ventral tegmental area A10contraVTA-0.5
Peripeduncular nucleuscontraPP-0.5
Dorsal tegmental nucleus lateral partcontraDLTN1
Interstitial nucleus of CajalcontraInC1
Interposed cerebellar nucleicontraICN-0.5
Lateral cerebellar nucleuscontraCERL-0.5
Medial cerebellar nucleuscontraMed-0.5
Locus coeruleuscontraLC-0.5
Mesencephalic reticular formationcontraMRF-0.5
Pontine reticular nucleuscontraPRN-0.5
Lateral parabrachial nucleuscontraLPB1
Lateral reticular nucleuscontraLRt1
Principal sensory trigeminal nucleus ventrolateral partcontraPr5VL-0.5
Nucleus of the solitary tractcontraSol1
Dorsal raphe nucleuscontraDR-0.5
Medial raphe nucleuscontraMeR-0.5
Pontine raphe nucleuscontraPnR-0.5
Diagonal band of BrocacontraDBB-0.5
Medial septal nucleuscontraMS-0.5
Intermediate hypothalamic cell groupscontraIHCG-0.5
Lateral preoptic areacontraLPO-0.5
Medial preoptic areacontraMPA-0.5
Dorsomedial hypothalamic nucleuscontraDMHy2
Lateral zonecontraLHA-0.5
Lateral hypothalamic area rostral partcontraLHro-0.5
Anterior hypothalamic areacontraAHA-0.5
Anterior hypothalamic area immediately caudal to the suprachiasmatic areacontraAHAcSCh-0.5
Dorsal hypothalamic areacontraDA-0.5
Posterior hypothalamic areacontraPHA-0.5
Posterior hypothalamic nucleuscontraPH-0.5
Ventromedial hypothalamic nucleuscontraVMH-0.5
Ventromedial hypothalamic nucleus lateral margincontraVMHLm-0.5
Ventromedial hypothalamic nucleus ventrolateral partcontraVMHVL-0.5
Paraventricular hypothalamic nucleus anterior parvicellular part [Periventricular zone anterior region]contraPaAP-0.5
Ventral part of the paraventricular hypothalamic nucleus anterior parvicellular part [Periventricular zone anterior region]contravPaAP-0.5
Adjacent to the ventral part of the paraventricular hypothalamic nucleus anterior parvicellular part [Periventricular zone anterior region]contraPaAPav-0.5
Paraventricular hypothalamic nucleuscontraPa-0.5
Anterior part of periventricular parvocellular subdivision of paraventricular hypothalamic nucleuscontraPVPapvA-0.5
Preoptic periventricular nucleuscontraPePO-0.5
Suprachiasmatic nucleuscontraSCh-0.5
Suprachiasmatic nucleus dorsal divisioncontraSChd-0.5
Region dorsal to suprachiasmatic nucleuscontraSChDT-0.5
Suprachiasmatic preoptic nucleuscontraPSCh-0.5
Supraoptic nucleus [Supraoptic region]contraSO-0.5
Perifornical nucleuscontraPeF-0.5
Retrochiasmatic area immediately caudal to the suprarchiasmatic areacontraRChcSCh-0.5
Paraventricular thalamic nucleuscontraPV-0.5
Reuniens thalamic nucleuscontraRe-0.5
Zona incertacontraZI-0.5
Nucleus of the fields of ForelcontraF-0.5
Lateral habenular nucleuscontraLHb1
RetinacontraRET-0.5
Lateral amygdaloid nucleuscontraLA-0.5
Bed nucleus of the stria terminaliscontraBST-0.5
Medial amygdaloid nucleus anterior partcontraMeAn-0.5
Ventral pallidumcontraVP-0.5
Accumbens nucleuscontraAc-0.5
Entorhinal cortexcontraEnt-0.5
Infralimbic cortexcontraIL-0.5
Dysgranular insular cortexcontraDI-0.5
Prefrontal cortexcontraPFC-0.5
Medial prefrontal cortexcontramPFC-0.5
Intergeniculate leafcontraIGL2
Septal regioncontraSER1
Dorsal septumcontraDSER-0.5
Lateral septal nucleuscontraLS-0.5
Cervical segmentscontraCSeg-0.5
Lumbar segmentscontraLSeg-0.5
Stomach wallipsiOrgsStomWS-10

Key for weights

ValueWeight
-3 unknown
-2 fibers of passage
-1 not clear
-0.5 exists
0 not present
0.5 very light
1 light / sparse
1.5 light / moderate
2 moderate / dense
2.5 moderate / strong
3 strong
4 very strong





Homepage | Staff | neuroVIISAS | Rat connectome | Other connectomes | Neuroimaging | Neurodegeneration | Students | Links | Publications