University of Rostock

Department of Anatomy

Neuroscience Group

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Rat connectome



Intercalated masses left


Abbreviation
IM
Color       
Superior regionsUnclassified cell group

SynonymsAbbr.Language
Intercalated cell groups  
Intercalated massesIMEng
Intercalated nucleus Eng
Intercalated nucleus Eng
Nucleus intercalatus Eng
Intercalated amygdalar nucleiIAEng

SubregionsSide
Intercalated amygdaloid nucleus main partleft
Intercalated nuclei of the amygdalaleft
Amygdaloid nucleus paracapsular intercalated cellleft
Intercalated cell chain between Ce BL LAleft
Intercalated masses between intermediate and external fiber capsulesleft
Intercalated masses dorsal to the rostral pole of Celeft
Intercalated masses ventral and dorsal to posterior limb of the anterior commissureleft
Lateral intercalated nucleusleft
Intercalated masses rostral partleft
Caudal portion of the intercalated nucleusleft
Intercalated nucleus medial partleft
Intercalated nucleus dorsal partleft

Output to

NameSideAbbr.WeightDetails
Cerebellar lobule 7ipsiCERL70
Cerebellar lobule 8ipsiCERL81
Cerebellar lobule 6aipsiCERL6a1
Cerebellar lobule 6bipsiCERL6b1
Cerebellar lobule 6cipsiCERL6c1
Lateral hypothalamic area motor related juxtaventromedial region dorsal zoneipsiLHAjvd0.5
Lateral hypothalamic area motor related juxtaventromedial region ventral zoneipsiLHAjvv0
Basolateral amygdaloid nucleusipsiBL0
Ventral striatumipsiCPuv-0.5
Subiculum ventral partipsiSv0.5
Dorsolateral entorhinal cortex caudal poleipsiDLEntcp0.5
Dorsolateral entorhinal cortex deep layersipsiDLEntdL0.5
Dorsolateral entorhinal cortex rostral partipsiDLEntR1
Cerebellar lobule 7contraCERL70
Cerebellar lobule 8contraCERL82
Cerebellar lobule 6acontraCERL6a1
Cerebellar lobule 6bcontraCERL6b1
Cerebellar lobule 6ccontraCERL6c1
Superior cervical ganglionipsiAutoSCeG-0.5
Adrenal medullary sympathetic preganglionic neuronsipsiGMedSyPG-0.5

Input from

NameSideAbbr.WeightDetails
Substantia nigra compact partipsiSNC-0.5
Substantia nigra compact part ventral tieripsiSNCV-0.5
Substantia nigra lateral partipsiSNL0
Substantia nigra medial partipsiSNM2
Ventral tegmental area A10ipsiVTA2
A4 noradrenaline cellsipsiA4-0.5
A5 noradrenaline cellsipsiA5-0.5
A7 noradrenaline cellsipsiA7-0.5
Locus coeruleusipsiLC-0.5
Nucleus of the solitary tract posterior partipsiSolP-0.5
Caudal pressor area of the caudal medullaipsiCPAMeObm-0.5
A1 noradrenergic cellsipsiA1-0.5
A2 noradrenergic cellsipsiA2-0.5
Lateral hypothalamic area motor related juxtaventromedial region dorsal zoneipsiLHAjvd0
Lateral hypothalamic area motor related juxtaventromedial region ventral zoneipsiLHAjvv0.5
Paraventricular hypothalamic nucleusipsiPa1
A8 dopamine cells retrorubral groupipsiRRF-0.5
Paraventricular thalamic nucleus anterior partipsiPVA1
Anterior basomedial nucleusipsiBMA0.5
Posterior basomedial nucleusipsiBMP0.5
Anterior cortical amygdaloid nucleusipsiACo-1
SubiculumipsiS1
Lateral entorhinal cortexipsiLEnt-0.5
Prelimbic cortex rostral partipsiPrLr2
Infralimbic cortexipsiIL-0.5
Nucleus of the solitary tract posterior partcontraSolP-0.5
Prelimbic cortex rostral partcontraPrLr2

Key for weights

ValueWeight
-3 unknown
-2 fibers of passage
-1 not clear
-0.5 exists
0 not present
0.5 very light
1 light / sparse
1.5 light / moderate
2 moderate / dense
2.5 moderate / strong
3 strong
4 very strong





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