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Rat connectome



Substantia nigra lateral part left


Abbreviation
SNL
Color       
Superior regionsSubstantia nigra A9

SynonymsAbbr.Language
Substantia nigra lateral partSNLEng
Substantia nigra pars lateralis  
Substantia nigra pars lateralis  
Lateral portion of the substantia nigra Eng
Lateral subdivision of substantia nigra  
Lateral part of the A9 catecholaminergic cell group Eng

SubregionsSide
Area situated above the lateral division of the substantia nigraleft
Medialmost part of substantia nigra pars lateralisleft
Rostral part of the lateral substantia nigraleft
Substantia nigra lateral part anterior portionleft
Substantia nigra lateral part posterior portionleft
Substantia nigra lateral part rostrocaudal extentleft
Middle lateral substantia nigraleft

Output to

NameSideAbbr.WeightDetails
MesencephalonipsiMEC-0.5
Central grayipsiCG2
Central gray lateral partipsiCGL-0.5
Central grey periaqueductalipsiCGPAG2
Central gray mesencephalic part inferior colliculus levelipsiCGMinf-1
Central gray mesencephalic part intercollicular levelipsiCGMint-1
Nuclei of the lateral lemniscusipsiNLL1
Periaqueductal grayipsiPAG3
Ventrolateral periaqueductal grayipsiVLPAG1
Ventromedial pontine nucleusipsiVMPn1
Inferior colliculusipsiICOL3
Ventral division of the caudal inferior colliculusipsiICOLCV-0.5
Central nucleus of the inferior colliculusipsiCIC1
External cortex of the inferior colliculusipsiECIC2
Rostrocaudal extent of the inferior colliculusipsiRCeICOL-0.5
Shell region of the central nucleus of the inferior colliculusipsiSIC3
Superior colliculusipsiSC3
Superior colliculus lateral partipsiSCL1.5
Superior colliculus superficial layersipsiSCs0
Superior colliculus intermediate layersipsiSCi-0.5
Superior colliculus deep layers caudal partipsiSCdc2
Superior colliculus deep layers lateral partipsiSCdLa2
Central tegmental field dorsal partipsiTGACd0
Midbrain extrapyramidal areaipsiMEA0
Peduncularpontine nucleusipsiPPN2
Subpeduncular tegmental nucleusipsiSPTg3
Substantia nigra lateral partipsiSNL1
Ventral tegmental area A10ipsiVTA-0.5
Ventrolateral tegmental areaipsiVLTg2
Lateral tegmental areaipsiLTGA-0.5
Dorsal tegmental nucleusipsiDTg0
Dorsal tegmental nucleus ventromedial partipsiDTgVM1
Pedunculopontine tegmental nucleusipsiPPTg3
Locus coeruleusipsiLC-0.5
Pontine tegmental fieldipsiPTF0
Intermediate reticular nucleusipsiIRt-0.5
Reticular formation at trigeminal motor nucleusipsiRF50.5
Deep mesencephalic nucleusipsiDpMe3
Ventral mesencephalic reticular formationipsiMRFV1
Pontine reticular nucleusipsiPRN3
Peribrachial regionipsiPBR3
Cuneiforme nucleusipsiCnF3
Cuneiforme nucleus caudal partipsiCnFc1
Parabrachial nucleusipsiPB2
Gigantocellular reticular nucleusipsiGi3
Lateral reticular nucleusipsiLRt3
Medullary reticular nucleusipsiMdD3
Medial subnucleus reticularis ventralisipsiMSRV-0.5
Medullary reticular nucleus dorsal partipsiMdDd-0.5
Parvicellular reticular nucleusipsiPCRt2
Mesencephalic trigeminal nucleusipsiMe52
Mesencephalic trigeminal nucleus caudal partipsiMe5Ca3
Principal sensory trigeminal nucleusipsiPr50
Spinal trigeminal nucleusipsiSp5nc0
Nucleus of the solitary tractipsiSol1
Dorsal raphe nucleus dorsal partipsiDRD0.5
Dorsal raphe nucleus lateral wingipsiDRlw1
Dorsal raphe nucleus rostral partipsiDRr0.5
Dorsal raphe nucleus ventral partipsiDRV0.5
Median raphe nucleusipsiMnR1
Pontine raphe nucleusipsiPnR-0.5
Caudal medulla oblongataipsiCMeOb0.5
Paragigantocellular reticular nucleusipsiPGi1
Basal forebrainipsiBAF1
Substantia innominataipsiSI2
HypothalamusipsiHYPO-0.5
A8 dopamine cells retrorubral groupipsiRRF1
Retrochiasmatic areaipsiRCh-0.5
Dorsal part of the lateral geniculate complexipsiLGd-0.5
Central medial thalamic nucleusipsiCM3
Paracentral thalamic nucleusipsiPC3
Parafascicular thalamic nucleusipsiPF3
Mediodorsal thalamic nucleusipsiMD3
Mediodorsal thalamic nucleus medial partipsiMDM3
Mediodorsal thalamic nucleus ventral partipsiMDTV0.5
Ventromedial thalamic nucleusipsiVM2
Ventromedial thalamic nucleus lateral partipsiVML-0.5
Lateral posterior thalamic nucleusipsiLP-0.5
Ventral thalamusipsiVNT-0.5
Ventral medial nucleus of the thalamusipsiVMT3
Zona incertaipsiZI2
Amygdaloid complexipsiAC3
Basal magnocellular nucleus rostral poleipsiBmcR3
Basolateral amygdaloid nucleusipsiBL2
Basomedial amygdaloid nucleusipsiBM-0.5
Lateral amygdaloid nucleusipsiLA3
Posterior part of the lateral nucleusipsiLAP0
Bed nucleus of the stria terminalisipsiBST1
Bed nucleus of the stria terminalis anterior dorsal areaipsiBSTAD1
Bed nucleus of the stria terminalis anterior lateral areaipsiBSTAL1
Bed nucleus of the stria terminalis caudal part caudoventral regionipsiBSTCacv0.5
Bed nucleus of the stria terminalis caudal part perifornical regionipsiBSTCapf0.5
Bed nucleus of the stria terminalis intraamygdaloid divisionipsiBSTIA1
Bed nucleus of the stria terminalis lateral divisionipsiBSTL0.5
Bed nucleus of the stria terminalis medial divisionipsiBSTM0.5
Central amygdaloid nucleusipsiCe3
Central amygdaloid nucleus ventral halfipsiCeVh-0.5
Interstitial nucleus of the posterior limb of the anterior commissureipsiIPAC0.5
Sublenticular extended amygdalaipsiSLEA0.5
Anterior amygdaloid areaipsiAA0
Amygdalostriatal transition areaipsiAStr2
Intercalated massesipsiIM0
ClaustrumipsiCl1
Globus pallidusipsiGP2
Caudal globus pallidusipsiGPc2
Medial globus pallidusipsiMGP-0.5
StriatumipsiSTR3
Accumbens nucleus shellipsiAcbSh1
Caudate putamenipsiCPu3
Medial striatumipsiCPum-0.5
Caudal striatumipsiCPuc2
Caudal basal caudate putamenipsiCPuCB-0.5
Central striatumipsiCPuce2
Dorsal striatumipsiCPud2
Posterior caudate putamenipsiCPup2
Rostral striatumipsiCPur1
Rostrolateral striatumipsiCPurl2
Ventral striatumipsiCPuv2
Ventrolateral striatumipsiCPuvl1
Caudate putamen tailipsiCPuT3
Middle caudate putamenipsiCPuMi2
Lateral striatumipsiCPul3
Tail of the striatumipsiCPuTa-0.5
Subthalamic nucleusipsiSTh2
Cerebral cortexipsiCEC-0.5
Cingulate cortexipsiCg1
Anterior cingulate cortexipsiACC-0.5
Posterior cingulate cortexipsiPCC-0.5
Prelimbic cortexipsiPrL1
Infralimbic cortexipsiIL1
Frontal association cortexipsiFrA-0.5
Suprarhinal regionipsiSRR-0.5
Agranular insular cortexipsiAI0
Prefrontal cortex supragenual partipsisgPFC0
Medial prefrontal cortexipsimPFC1
Lateral orbital cortexipsiLO1
Dorsal geniculate nucleus lateral partipsiDLGl-0.5
Lateral geniculate complexipsiLG-0.5
Olfactory tubercleipsiTuO1
Septal regionipsiSER1
Spinal cordipsiMES0
Central graycontraCG2
Central grey periaqueductalcontraCGPAG0.5
Nuclei of the lateral lemniscuscontraNLL1
Periaqueductal graycontraPAG0.5
Inferior colliculuscontraICOL1
Peripheral shell region dorsomedial to the central nucleus of the inferior colliculuscontraCICDMpsr1.5
External cortex of the inferior colliculuscontraECIC1
Shell region of the central nucleus of the inferior colliculuscontraSIC0.5
Superior colliculuscontraSC1
Superior colliculus superficial layerscontraSCs0
Superior colliculus deep layers caudal partcontraSCdc1
Superior colliculus deep layers lateral partcontraSCdLa2
Central tegmental field dorsal partcontraTGACd0
Midbrain extrapyramidal areacontraMEA0
Dorsal tegmental nucleuscontraDTg0
Pedunculopontine tegmental nucleuscontraPPTg0.5
CerebellumcontraCERE-0.5
Pontine tegmental fieldcontraPTF0
Peribrachial regioncontraPBR0.5
Cuneiforme nucleuscontraCnF0.5
Parabrachial nucleuscontraPB0.5
Parvicellular reticular nucleuscontraPCRt0.5
Mesencephalic trigeminal nucleuscontraMe5-0.5
Mesencephalic trigeminal nucleus caudal partcontraMe5Ca3
Dorsal raphe nucleus lateral wingcontraDRlw1
Median raphe nucleuscontraMnR0
Paragigantocellular reticular nucleuscontraPGi-0.5
Basal forebraincontraBAF0
A8 dopamine cells retrorubral groupcontraRRF0
Central amygdaloid nucleuscontraCe1
Caudate putamencontraCPu1
Caudal striatumcontraCPuc2
Caudal basal caudate putamencontraCPuCB1
Rostral striatumcontraCPur1
Middle caudate putamencontraCPuMi2
Lateral striatumcontraCPul3
Subthalamic nucleuscontraSTh-0.5
Bulbospongiosus muscleipsiMuscbsp1
Bulbospongiosus musclecontraMuscbsp1

Input from

NameSideAbbr.WeightDetails
Central gray mesencephalic partipsiCGM0
Periaqueductal grayipsiPAG0.5
Dorsal periaqueductal grayipsiDPAG-0.5
Dorsal periaqueductal gray caudal partipsiDPAGC0.5
Dorsolateral periaqueductal gray caudal partipsiPAGdlc2
Dorsolateral periaqueductal gray rostral partipsiPAGdlr0
Ventrolateral periaqueductal gray caudal partipsiPAGvlc0.5
Ventrolateral periaqueductal gray rostral partipsiPAGvlr0.5
External cortex of the inferior colliculusipsiECIC-1
Dorsal cortex of the inferior colliculusipsiDCIC-1
Superior colliculusipsiSC1
Intermediate white layer of the superior colliculusipsiInWh1
Peduncularpontine nucleusipsiPPN1
Substantia nigra compact partipsiSNC-0.5
Substantia nigra compact part lateral tieripsiSNCL1
Substantia nigra lateral partipsiSNL1
Substantia nigra lateral part anterior portionipsiSNLa-0.5
Substantia nigra reticular part lateral tieripsiSNRL0
Ventral tegmental area rostrodorsolateral partipsiVTARDL1
Peripeduncular nucleusipsiPP1
Ventrolateral tegmental areaipsiVLTg1
Laterodorsal tegmental nucleusipsiLDTg1
Pedunculopontine tegmental nucleusipsiPPTg1
Central cerbellar nucleiipsiCERcn0
Interposed cerebellar nucleiipsiICN1
Lateral cerebellar nucleusipsiCERL1
Medial cerebellar nucleusipsiMed0
Locus coeruleusipsiLC2
Peribrachial regionipsiPBR2
Cuneiforme nucleusipsiCnF-0.5
Parabrachial nucleusipsiPB2
MyelencephalonipsiMYC-0.5
Basal nucleus MeynertipsiB2
Substantia innominataipsiSI1
Preoptic regionipsiPREO-0.5
Lateral preoptic areaipsiLPO2
Tuberomammillary nucleusipsiTuM-0.5
Tuberomammillary nucleus lateral partipsiTuML-0.5
Ventral tuberomammillary nucleusipsiVTM-0.5
Posterior subdivision of the tuberomammillary nucleusipsiTuMP-0.5
Tuberomammillary nucleus tuberal partipsiTuMT-0.5
Tuberomammillary nucleus interstitial partipsiTuMis-0.5
HypothalamusipsiHYPO3
Perifornical hypothalamic area [Preoptic anterior region]ipsiPFxPAR2
Lateral hypothalamic areaipsiLH3
Lateral hypothalamic area perifornical partipsiPFx3
Lateral hypothalamic area [Lateral zone mammillary level]ipsiLHLZM2
Dorsomedial hypothalamic nucleus [Medial zone]ipsiDM3
Dorsomedial hypothalamic nucleus dorsomedial partipsiDMDM3
Ventromedial hypothalamic nucleusipsiVMH2
Paraventricular hypothalamic nucleus parvicellular part [Periventricular zone anterior region]ipsiPaPc1
Perifornical nucleusipsiPeF1
ThalamusipsiT0
Parafascicular thalamic nucleusipsiPF-0.5
Ventromedial thalamic nucleusipsiVM2
Intramedullary thalamic areaipsiIMA1
Lateral posterior thalamic nucleus caudal partipsiLPca-0.5
Zona incertaipsiZI3
Zona incerta parvocellular partipsiZIpc-0.5
Lateral habenular nucleusipsiLHb-0.5
Pineal glandipsiPi1
Amygdaloid complexipsiAC2
Basolateral amygdaloid nucleusipsiBL1.5
Anterior basolateral nucleusipsiBLA-0.5
Lateral amygdaloid nucleusipsiLA3
Bed nucleus of the stria terminalisipsiBST1
Bed nucleus of the stria terminalis lateral divisionipsiBSTL2
Central amygdaloid nucleusipsiCe3
Caudal half of the lateral capsular subdivision of the central nucleus of the amygdalaipsiCeLaccH-0.5
Central amygdaloid nucleus dorsal partipsiCed1
Central amygdaloid nucleus lateral divisionipsiCeL2
Central amygdaloid nucleus lateral division capsular partipsiCeC3
Central amygdaloid nucleus medial divisionipsiCeM1.5
Central amygdaloid nucleus medial division caudal partipsiCeMc3
Central amygdaloid nucleus medial division middle partipsiCeMmi3
Central amygdaloid nucleus medial division rostral partipsiCeMR3
Central amygdaloid nucleus medial division ventral partipsiCeMv2
Medial amygdaloid nucleusipsiMe1.5
Amygdalostriatal transition areaipsiAStr1.5
Globus pallidusipsiGP3
Caudal globus pallidusipsiGPc3
Globus pallidus anterior portionipsiGPAp2
Lateral globus pallidusipsiLGP2
Ventral pallidumipsiVP2
Ventral pallidum lateral partipsiVPlp-0.5
StriatumipsiSTR3
Accumbens nucleusipsiAc0
Lateral coreipsiAcbCl1
Ventral coreipsiAcbCv1
Caudate putamenipsiCPu3
Medial striatumipsiCPum2
Caudal striatumipsiCPuc-2
Medial part of caudalmost striatumipsiCPumcm3
Dorsal striatumipsiCPud1.5
Posterior caudate putamenipsiCPup1.5
Rostral striatumipsiCPur2
Ventral striatumipsiCPuv2
Lateral striatumipsiCPul3
Fundus of the striatumipsiFS2
Subthalamic nucleusipsiSTh3
Parasubthalamic nucleusipsiPSTh4
Cerebral cortexipsiCEC1
Parietal association cortex intermediate layersipsiParPLai2
Agranular insular cortexipsiAI-2
Agranular insular cortex ventral part jaw movement areaipsiAIVjm-2
Perirhinal cortexipsiA352
Intermediate layers of the perirhinal regions of the neocortexipsiPRhLi2
Perirhinal cortex inner layersipsiPRhiL2
Periaqueductal graycontraPAG0
Dorsal periaqueductal gray caudal partcontraDPAGC0.5
Dorsolateral periaqueductal gray caudal partcontraPAGdlc0.5
Dorsolateral periaqueductal gray rostral partcontraPAGdlr0.5
Ventrolateral periaqueductal gray caudal partcontraPAGvlc0.5
Ventrolateral periaqueductal gray rostral partcontraPAGvlr0
Superior colliculuscontraSC2
Ventrolateral tegmental areacontraVLTg1
Laterodorsal tegmental nucleuscontraLDTg-0.5
Locus coeruleuscontraLC0.5
Parabrachial nucleuscontraPB0.5
Preoptic regioncontraPREO0.5
Lateral preoptic areacontraLPO1
Tuberomammillary nucleuscontraTuM-0.5
Tuberomammillary nucleus lateral partcontraTuML-0.5
Ventral tuberomammillary nucleuscontraVTM-0.5
Posterior subdivision of the tuberomammillary nucleuscontraTuMP-0.5
Tuberomammillary nucleus tuberal partcontraTuMT-0.5
Tuberomammillary nucleus interstitial partcontraTuMis-0.5
HypothalamuscontraHYPO1
Perifornical hypothalamic area [Preoptic anterior region]contraPFxPAR0.5
Lateral hypothalamic areacontraLH1
Ventromedial hypothalamic nucleuscontraVMH1
Paraventricular hypothalamic nucleus parvicellular part [Periventricular zone anterior region]contraPaPc0.5
Perifornical nucleuscontraPeF0.5
Zona incertacontraZI0.5
Central amygdaloid nucleuscontraCe2
Amygdalostriatal transition areacontraAStr0
Caudate putamencontraCPu-0.5
TongueipsiOrgOCT-10
Posterior digastricus muscleipsiMuscPDig-10
Genioglossus muscleipsiMuscGenioG-10
Geniohyoid muscleipsiMuscGenio-10
Styloglossus muscle systemipsiMuscStyG-10
Buccinator muscleipsiMuscBucc-10
PlatysmaipsiMuscPla-10
Zygomatic muscleipsiMuscZygo-10
Hyoglossus muscleipsiMuscHyo-10

Key for weights

ValueWeight
-3 unknown
-2 fibers of passage
-1 not clear
-0.5 exists
0 not present
0.5 very light
1 light / sparse
1.5 light / moderate
2 moderate / dense
2.5 moderate / strong
3 strong
4 very strong





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