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Rat connectome



Paraventricular thalamic nucleus anterior part left


Abbreviation
PVA
Color       
Superior regionsParaventricular thalamic nucleus

SynonymsAbbr.Language
Paraventricular thalamic nucleus anterior division  
Anterior paraventricular nucleus  
Paraventricular thalamic nucleus anterior partPVAEng
Anterior paraventricular thalamic nucleus  
Area just rostral to the central medial nucleus Eng
Anterior part of the paraventricular thalamic nucleusPVTa 

SubregionsSide
Bilobate portion of the anterior paraventricular thalamic nucleusleft
Paraventricular thalamic nucleus anterior part dorsal portionleft
Paraventricular thalamic nucleus anterior part ventral portionleft
Paraventricular thalamic nucleus rostral tip of the anterior partleft

Output to

NameSideAbbr.WeightDetails
Ventral tegmental area A10ipsiVTA-0.5
Paraflocculus ventral partipsiPFlv-0.5
FlocculusipsiFl-0.5
Endopiriform systemipsiEnN0
Diagonal band of BrocaipsiDBB0
Medial septal nucleusipsiMS0
Basal nucleus Meynert medial partipsiBmp2
Substantia innominataipsiSI3
Medial preoptic areaipsiMPA0
Medial preoptic nucleusipsiMPO1
Median preoptic nucleusipsiMnPO1.5
Tenia tectaipsiTT1
Lateral hypothalamic areaipsiLH0
Lateral hypothalamic area caudal partipsiLHc3
Dorsomedial hypothalamic nucleus [Medial zone]ipsiDM1
Posterior hypothalamic areaipsiPHA0
Anteroventral periventricular nucleus 2ipsiAVPV20.5
Arcuate nucleusipsiArc1.5
Paraventricular hypothalamic nucleusipsiPa0
Suprachiasmatic nucleusipsiSCh1.5
Supramammillar nucleusipsiSuM0
Dorsochiasmatic areaipsiDRCh2
Anterior group of the dorsal thalamusipsiATN-0.5
Interoanteromedial thalamic nucleusipsiIAM0
Central medial thalamic nucleusipsiCM-0.5
Parafascicular thalamic nucleusipsiPF0
Rhomboid thalamic nucleusipsiRh0
Mediodorsal thalamic nucleusipsiMD0
Intermediodorsal thalamic nucleusipsiIMD-0.5
Paratenial thalamic nucleusipsiPT0
Paraventricular thalamic nucleusipsiPV1
Reuniens thalamic nucleusipsiRe-0.5
Reticular thalamic nucleusipsiRt0
Amygdaloid complexipsiAC-0.5
Basal nucleusipsiBnc-1
Basal dorsal nucleusipsiBnD-0.5
Basal nucleus anterior subdivisionipsiBncA2
Basolateral amygdaloid nucleusipsiBL1
Anterior basolateral nucleusipsiBLA-0.5
Basolateral amygdaloid nucleus caudal medial portionipsiBLcm1
Basolateral nucleus rostral partipsiBLRP1
Basomedial amygdaloid nucleusipsiBM1.5
Anterior basomedial nucleusipsiBMA-0.5
Lateral amygdaloid nucleusipsiLA0
Ventromedial part of the lateral nucleusipsiLaVM1
Bed nucleus of the stria terminalisipsiBST3
Bed nucleus of the stria terminalis anterior medial partipsiBSTAM3
Bed nucleus of the stria terminalis dorsolateral partipsiBSTDL3
Bed nucleus of the stria terminalis intraamygdaloid divisionipsiBSTIA2
Bed nucleus of the stria terminalis lateral divisionipsiBSTL-0.5
Bed nucleus of the stria terminalis medial divisionipsiBSTM-0.5
Bed nucleus of the stria terminalis medial division posterior partipsiBSTMP3
Bed nucleus of the stria terminalis medial division ventral partipsiBSTMV3
Bed nucleus of the stria terminalis posterior division intermediate partipsiBSTPi3
Bed nucleus of the stria terminalis preoptic partipsiBSTPO3
Central amygdaloid nucleusipsiCe2
Capsule like area surrounding central amygdaloid nucleusipsiCec2
Central amygdaloid nucleus lateral divisionipsiCeL-0.5
Central amygdaloid nucleus lateral division capsular partipsiCeC-0.5
Central partipsiCeLc3
Central amygdaloid nucleus medial divisionipsiCeM-0.5
Interstitial nucleus of the posterior limb of the anterior commissure medial partipsiIPACM2
Central division of sublenticular extended amygdalaipsiSLEAc-0.5
Amygdalopiriform transition areaipsiAPir2
Anterior amygdaloid areaipsiAA1
Cortical amygdaloid nucleusipsiCAn-0.5
Anterior cortical amygdaloid nucleusipsiACo1
Posterior amygdaloid nucleusipsiCOAp0
Medial amygdaloid nucleusipsiMe1
Medial amygdaloid nucleus anterior partipsiMeAn0.5
Amygdalohippocampal areaipsiAHi2
Intercalated massesipsiIM1
ClaustrumipsiCl1.5
Globus pallidusipsiGP1
Accumbens nucleusipsiAc2
Accumbens nucleus coreipsiAcbC3
Medial coreipsiAcbCm-0.5
Rostral pole of the accumbens nucleusipsiAcbRP2
Accumbens nucleus rostrolateral partipsiAcRL1
Accumbens nucleus shellipsiAcbSh4
Accumbens nucleus caudomedial shellipsiAcbShcm3
Dorsomedial shellipsiAcbShdm-0.5
Lateral accumbens shellipsiAcbShl2
Medial accumbens shellipsiAcbShm2
Ventromedial shellipsiAcbShvm-0.5
Caudal accumbensipsiAcbCa2
Medial accumbensipsiAcbM3
Septal pole of the accumbens nucleusipsiAcSe-2
Caudate putamenipsiCPu1.5
Medial striatumipsiCPum1
Ventral striatumipsiCPuv-1
Ventrolateral striatumipsiCPuvl1
Ventromedial striatumipsiCPuvm2.5
Fundus of the striatumipsiFS2
HippocampusipsiHIPP0.5
Ammon hornipsiAmH3
SubiculumipsiS2
Subiculum ventral partipsiSv3
Entorhinal cortexipsiEnt1
Lateral entorhinal cortex ventral partipsiVLEA4
Lateral entorhinal cortex ventromedial partipsiVMEAL3
Medial entorhinal cortexipsiMEnt1
Piriform cortexipsiPir1
Posterior piriform cortexipsiPPIRC1
Retrosplenial regionsipsiRS0
Cingulate cortex area 1 caudal partipsiCg1c0
Cingulate cortex area 2 caudal partipsiCg2c0
Dorsal anterior cingulate cortexipsiDACC0
Ventral anterior cingulate cortexipsiVACC0
Cingulate cortex layer 1ipsiCgL12
Cingulate cortex layer 5ipsiCgL52
Cingulate cortex layer 6ipsiCgL62
Prelimbic cortexipsiPrL3
Prelimbic cortex dorsal part layer 6ipsiPrLdL62
Prelimbic cortex ventral part layer 1ipsiPrLvL12
Prelimbic cortex ventral part layer 5ipsiPrLvL52
Prelimbic cortex ventral part layer 6ipsiPrLvL62
Infralimbic cortexipsiIL3
Parietal association cortexipsiPtA0
Frontal polar cortex lateral partipsiFPl1
Frontal polar cortex medial partipsiFPm1
Agranular insular cortex dorsal partipsiAID1.5
Agranular insular cortex rostral partipsiRAIC3
Agranular insular cortex posterior partipsiAIP1
Agranular insular cortex posterior part layer 6ipsiAIPL61
Agranular insular cortex ventral partipsiAIV0
Granular insular cortexipsiGI0
Perirhinal cortexipsiA351
Perirhinal cortex layer 3ipsiA35L31
Perirhinal cortex layer 5ipsiA35L52
Perirhinal cortex layer 6ipsiA35L62
Ectorhinal cortexipsiA361
Prefrontal cortexipsiPFC2
Lateral agranular prefrontal cortexipsiAGl0
Medial prefrontal cortexipsimPFC0
Medial agranular prefrontal cortexipsiAGm0
Primary somatosensory cortexipsiS10
Secondary somatosensory cortexipsiS20
Lateral orbital cortexipsiLO1
Medial orbital cortexipsiMO1
Ventral orbital cortexipsiVO1.5
Ventrolateral orbital areaipsiVLO0
Olfactory tubercleipsiTuO2
Olfactory tubercle polymorph layeripsiTuOpo1
Lateral septal nucleusipsiLS1
Lateral septal nucleus ventral partipsiLSV4
Septohypothalamic nucleusipsiSHy3
Medial preoptic nucleuscontraMPO0.5
Anteroventral periventricular nucleus 2contraAVPV20.5
Accumbens nucleus shellcontraAcbSh-0.5
Dorsomedial shellcontraAcbShdm-0.5
Ventrolateral striatumcontraCPuvl0.5
Ventromedial striatumcontraCPuvm1.5
Ammon horncontraAmH-0.5
Agranular insular cortex rostral partcontraRAIC1
Adrenal glandipsiADRE-0.5
Femoral bone marrowipsiOrgSkFemM2
Femoral bone marrowcontraOrgSkFemM-0.5

Input from

NameSideAbbr.WeightDetails
Central grayipsiCG3
Paralemniscal nucleusipsiPL1
Nucleus of DarkschewitschipsiDk1
Periaqueductal grayipsiPAG2
Dorsolateral periaqueductal grayipsiDLPAG2
Dorsomedial periaqueductal grayipsiDMPAG2
Lateral periaqueductal grayipsiLPAG2
Ventrolateral periaqueductal grayipsiVLPAG2
Superior colliculus lateral partipsiSCL1
Superior colliculus medial partipsimSC2
Central tegmental fieldipsiTGAC2
Subpeduncular tegmental nucleusipsiSPTg0
Substantia nigra compact partipsiSNC1
Substantia nigra reticular partipsiSNR1
Ventral tegmental area A10ipsiVTA1
Parabrachial pigmented nucleusipsiPBP1
Caudal linear nucleus of the rapheipsiCLi2
Laterodorsal tegmental nucleusipsiLDTg3
Dorsal tegmental nucleusipsiDTg2
Dorsal tegmental nucleus lateral partipsiDLTN2
Pedunculopontine tegmental nucleusipsiPPTg4
Interstitial nucleus of CajalipsiInC0
A5 noradrenaline cellsipsiA50
Barringtons nucleusipsiBar1
Locus coeruleusipsiLC3
Prelocus coeruleus nucleusipsiPLC3
Nucleus incertusipsiNI1
Nucleus incertus pars compactaipsiNIc1
Dorsomedial tegmental areaipsiDMTg1
Prepositus nucleusipsiPr0
Intermediate reticular nucleusipsiIRt1
Deep mesencephalic nucleusipsiDpMe3
Pontine reticular nucleus oral partipsiPnO0
Pontine reticular nucleus ventral partipsiPnV1
Pontine reticular nucleus caudal partipsiPNC1
Cuneiforme nucleusipsiCnF1
Parabrachial nucleusipsiPB2
Parabrachial nucleus external divison lateral partipsiPBeDL3
Gigantocellular reticular nucleusipsiGi1
Gigantocellular reticular nucleus alpha partipsiGiA1
Medullary reticular nucleusipsiMdD1
Subnucleus reticularis dorsalisipsiSRD0
Medullary reticular nucleus ventral partipsiMdV0
Parvicellular reticular nucleusipsiPCRt0
Subcoeruleus nucleusipsiSubC0
Principal sensory trigeminal nucleusipsiPr50
Spinal trigeminal nucleus caudal partipsiSp5C0
Spinal trigeminal nucleus interpolar partipsiSp5I0
Spinal trigeminal nucleus oral partipsiSp5O0
Vestibular nucleiipsiVnc0
Nucleus of the solitary tractipsiSol2
Dorsal raphe nucleusipsiDR-0.5
Dorsal raphe nucleus caudal partipsiDRC2
Dorsal raphe nucleus dorsal partipsiDRD4
Dorsal raphe nucleus ventral partipsiDRV3
Dorsal raphe nucleus ventrolateral partipsiDRVL3
Rostral linear nucleus of the rapheipsiRLi0
Median raphe nucleusipsiMnR4
Paramedian raphe nucleusipsiPMnR1
Raphe interpositus nucleusipsiRIP1
Raphe magnus nucleusipsiRMg1
Raphe obscurus nucleusipsiROb0
Raphe pallidus nucleusipsiRPa1
Rostral ventrolateral medullaipsiRVLM1
Cuneate nucleusipsiCu0
Gracile nucleus principal partipsiGr0
Dorsal paragigantocellular nucleusipsiDPGi0
Lateral paragigantocellular nucleusipsiLPGi0
Lateral preoptic areaipsiLPO-0.5
Lateral hypothalamic areaipsiLH3
Dorsolateral hypothalamusipsiDLH-0.5
Lateral hypothalamic area anterior partipsiLHAa-0.5
Lateral hypothalamic area dorsal partipsiLHd-0.5
Lateral hypothalamic area perifornical partipsiPFx3
Lateral hypothalamic area ventral partipsiLHAvp-0.5
Tuberal division of the lateral hypothalamic areaipsiLHTC-0.5
Anterior hypothalamic nucleusipsiAHn4
Dorsomedial hypothalamic nucleus [Medial zone]ipsiDM3
Posterior hypothalamic areaipsiPHA0
Posterior hypothalamic nucleus caudal partipsiPHCa3
Posterior hypothalamic nucleus rostral partipsiPHRo3
Subparaventricular zone ventral partipsiSuPZv2
Lateral part of ventral subparaventricular zoneipsiSuPZvL2.5
Subparaventricular zone ventromedial partipsiSuPZvm4
Subparaventricular zone dorsomedial partipsiSuPZdm2
Subparaventricular zone dorsolateral partipsiSuPZdL3
Paraventricular hypothalamic nucleus medial parvicellular part [Periventricular zone anterior region]ipsiPaMP-0.5
Suprachiasmatic nucleusipsiSCh2.5
Mammillary bodyipsiCMAM0
A8 dopamine cells retrorubral groupipsiRRF1
Rhomboid thalamic nucleusipsiRh1
Reuniens thalamic nucleusipsiRe1
Reticular thalamic nucleusipsiRt2
Bed nucleus of the stria terminalisipsiBST1
Bed nucleus of the stria terminalis anterior medial partipsiBSTAM3
Caudal globus pallidusipsiGPc0.5
Parasubthalamic nucleusipsiPSTh1
SubiculumipsiS4
Subiculum ventral partipsiSv3
Cingulate cortex area 1ipsiCg12
Prelimbic cortexipsiPrL3
Prelimbic cortex anterior partipsiPrLa1
Prelimbic cortex posterior partipsiPrLP3
Infralimbic areaipsiiLA1
Infralimbic cortexipsiIL3
Agranular insular cortexipsiAI1
Agranular insular cortex rostral partipsiRAIC2
Dorsal peduncular cortexipsiDP1
Orbital cortexipsiOrC1
Intergeniculate leafipsiIGL-0.5
Interpeduncular nucleusipsiIP1
Lateral septal nucleus rostral part dorsolateral zoneipsiLSrdl3
Central graycontraCG1
Superior colliculus lateral partcontraSCL1
Superior colliculus medial partcontramSC1.5
Dorsal tegmental nucleuscontraDTg1
Dorsal tegmental nucleus lateral partcontraDLTN1
Suprachiasmatic nucleuscontraSCh-1
Agranular insular cortex rostral partcontraRAIC1

Key for weights

ValueWeight
-3 unknown
-2 fibers of passage
-1 not clear
-0.5 exists
0 not present
0.5 very light
1 light / sparse
1.5 light / moderate
2 moderate / dense
2.5 moderate / strong
3 strong
4 very strong





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