University of Rostock

Department of Anatomy

Neuroscience Group

  Homepage

 Staff

 neuroVIISAS

 Rat connectome

 Other connectomes

 Neuroimaging

 Neurodegeneration

 Neuroproteomics

 Students

 Links

 Publications

Rat connectome



A7 noradrenaline cells left


Abbreviation
A7
Color       
Superior regionsPons

SynonymsAbbr.Language
A7 noradrenaline cellsA7Eng
A7 nucleusA7Eng

SubregionsSide
Rostral part of A7left
Medial two-thirds of the A7 cell groupleft
Lateral-third of the A7 cell groupleft

Output to

NameSideAbbr.WeightDetails
Periaqueductal grayipsiPAG2
Red nucleusipsiR0.5
Inferior colliculusipsiICOL1.5
Superior colliculusipsiSC-0.5
Substantia nigra A9ipsiSN0.5
Ventral tegmental area A10ipsiVTA-0.5
Ventral tegmental area A10 caudomedial partipsiVTACM0
Interfascicular nucleusipsiIF0
Ventral tegmental area A10 medial partipsiVTAM0.5
Parabrachial nucleusipsiPB0
Medial trapezoid nucleusipsiMTz-0.5
Ventral nucleus of the trapezoid bodyipsiVNTB-0.5
Facial nucleusipsi71
Hypoglossal nucleusipsi12S1.5
Hypoglossal motor nucleusipsi12M1
Motor trigeminal nucleusipsiMo53
Nucleus of the solitary tractipsiSol-0.5
Nucleus of the solitary tract intermediate partipsiSolIM1
Parasolitary nucleusipsiPSol1
Dorsal motor nucleus of vagusipsi10-0.5
Rostral linear nucleus of the rapheipsiRLi0.5
Central raphe nucleusipsiCRN0.5
Raphe magnus nucleusipsiRMg-0.5
Raphe pallidus nucleusipsiRPa-0.5
Rostral ventrolateral medullaipsiRVLM-0.5
Gracile nucleus principal partipsiGr1
Lateral superior oliveipsiLSO-0.5
Superior paraolivary nucleusipsiSPO-0.5
Rostral part of the ventromedial medulla oblongataipsiRMeObvm3
Diagonal band of BrocaipsiDBB0
Medial septal nucleusipsiMS1
Substantia innominataipsiSI0.5
Medial preoptic areaipsiMPA0.5
Preoptic region rostral partipsiPREOr0
Tuberomammillary nucleus dorsomedial partipsiTBMdm0
Ventral tuberomammillary nucleusipsiVTM0
Glia limitans ventral to the ventral tuberomammillary nucleusipsiTuMgL0
Dorsomedial hypothalamic nucleusipsiDMHy0
Lateral hypothalamic area perifornical partipsiPFx1
Lateral hypothalamus adjacent to the ventral tuberomammillary nucleusipsiLHVTM0
Anteroventral periventricular nucleus [Anterior hypothalamic area]ipsiAVPe0
Dorsomedial hypothalamic nucleus [Medial zone]ipsiDM1
Lateral mammillary nucleusipsiLM0
Premammillary nucleus dorsal partipsiPMD0
Premammillary nucleus ventromedial partipsiPMvm0
Supramammillar nucleus lateral partipsiSuML0
A8 dopamine cells retrorubral groupipsiRRF0.5
A8 dopamine cells retrorubral group medial partipsiRRFm0.5
Retrochiasmatic areaipsiRCh0.5
Dorsolateral funiculusipsidlft0.5
Dorsolateral funiculus cervical part C5ipsidlftC50.5
Dorsolateral funiculus cervical part C6ipsidlftC60.5
Lateral funiculusipsilf1
Medial forebrain bundleipsimfb-2
Stria medullaris of the thalamusipsism0
Amygdaloid intramedullary grayipsiIMG-0.5
Amygdalostriatal transition areaipsiAStr-0.5
Intercalated massesipsiIM-0.5
Field CA1 of hippocampusipsiCA1-0.5
Fornixipsif0
Interpeduncular nucleusipsiIP0.5
Spinal cordipsiMES-0.5
Superficial dorsal horn of spinal cordipsisDHMES1
Intermediolateral cell column pars principalisipsiIMLp1
Ventral funiculusipsivf3
Cervical segment 1ipsiCS1-0.5
Intermediomedial cell column C1ipsiIMMC13
Area X C1ipsiSCL10C12
Dorsal horn C1ipsiDHC13
Spinal cord layer 6 C1ipsiSCL6C12
Spinal cord layer 3 C1ipsiSCL3C13
Spinal cord layer 4 C1ipsiSCL4C13
Spinal cord layer 1 C1ipsiSCL1C13
Spinal cord layer 2 C1ipsiSCL2C13
Ventral horn C1ipsiVHC11.5
Spinal cord layer 7 C1ipsiSCL7C12
Cervical segment 2ipsiCS2-0.5
Intermediomedial cell column C2ipsiIMMC23
Area X C2ipsiSCL10C22
Dorsal horn C2ipsiDHC23
Spinal cord layer 6 C2ipsiSCL6C22
Spinal cord layer 3 C2ipsiSCL3C23
Spinal cord layer 4 C2ipsiSCL4C23
Spinal cord layer 1 C2ipsiSCL1C23
Spinal cord layer 2 C2ipsiSCL2C23
Ventral horn C2ipsiVHC21.5
Spinal cord layer 7 C2ipsiSCL7C22
Cervical segment 3ipsiCS3-0.5
Intermediomedial cell column C3ipsiIMMC33
Area X C3ipsiSCL10C32
Dorsal horn C3ipsiDHC33
Spinal cord layer 6 C3ipsiSCL6C32
Spinal cord layer 3 C3ipsiSCL3C33
Spinal cord layer 4 C3ipsiSCL4C33
Spinal cord layer 1 C3ipsiSCL1C33
Spinal cord layer 2 C3ipsiSCL2C33
Ventral horn C3ipsiVHC31.5
Spinal cord layer 7 C3ipsiSCL7C32
Cervical segment 4ipsiCS4-0.5
Intermediomedial cell column C4ipsiIMMC43
Area X C4ipsiSCL10C42
Dorsal horn C4ipsiDHC43
Spinal cord layer 5 C4ipsiSCL5C42
Spinal cord layer 6 C4ipsiSCL6C42
Spinal cord layer 3 C4ipsiSCL3C43
Spinal cord layer 4 C4ipsiSCL4C43
Spinal cord layer 1 C4ipsiSCL1C43
Spinal cord layer 2 C4ipsiSCL2C43
Ventral horn C4ipsiVHC41.5
Spinal cord layer 7 C4ipsiSCL7C42
Cervical segment 5ipsiCS52
Intermediomedial cell column C5ipsiIMMC53
Area X C5ipsiSCL10C52
Dorsal horn C5ipsiDHC53
Spinal cord layer 5 C5ipsiSCL5C52
Spinal cord layer 6 C5ipsiSCL6C52
Spinal cord layer 3 C5ipsiSCL3C53
Spinal cord layer 4 C5ipsiSCL4C53
Spinal cord layer 1 C5ipsiSCL1C53
Spinal cord layer 2 C5ipsiSCL2C53
Ventral horn C5ipsiVHC51.5
Spinal cord layer 7 C5ipsiSCL7C52
Cervical segment 6ipsiCS62
Intermediomedial cell column C6ipsiIMMC63
Area X C6ipsiSCL10C62
Dorsal horn C6ipsiDHC63
Spinal cord layer 5 C6ipsiSCL5C62
Spinal cord layer 6 C6ipsiSCL6C62
Spinal cord layer 3 C6ipsiSCL3C63
Spinal cord layer 4 C6ipsiSCL4C63
Spinal cord layer 1 C6ipsiSCL1C63
Spinal cord layer 2 C6ipsiSCL2C63
Ventral horn C6ipsiVHC61.5
Spinal cord layer 7 C6ipsiSCL7C62
Cervical segment 7ipsiCS7-0.5
Intermediomedial cell column C7ipsiIMMC73
Area X C7ipsiSCL10C72
Dorsal horn C7ipsiDHC73
Spinal cord layer 5 C7ipsiSCL5C72
Spinal cord layer 6 C7ipsiSCL6C72
Spinal cord layer 3 C7ipsiSCL3C73
Spinal cord layer 4 C7ipsiSCL4C73
Spinal cord layer 1 C7ipsiSCL1C73
Spinal cord layer 2 C7ipsiSCL2C73
Ventral horn C7ipsiVHC71.5
Spinal cord layer 7 C7ipsiSCL7C72
Cervical segment 8ipsiCS8-0.5
Intermediomedial cell column C8ipsiIMMC83
Area X C8ipsiSCL10C82
Dorsal horn C8ipsiDHC83
Spinal cord layer 6 C8ipsiSCL6C82
Spinal cord layer 3 C8ipsiSCL3C83
Spinal cord layer 4 C8ipsiSCL4C83
Spinal cord layer 1 C8ipsiSCL1C83
Spinal cord layer 2 C8ipsiSCL2C83
Ventral horn C8ipsiVHC81.5
Spinal cord layer 7 C8ipsiSCL7C82
Thoracal segment 1ipsiT1-0.5
Intermediolateral cell column T1ipsiIMLT11
Intermediomedial cell column T1ipsiIMMT12
Spinal cord layers T1ipsiSCLT1-0.5
Area X T1ipsiSCL10T12
Dorsal horn T1ipsiDHT12
Spinal cord layer 6 T1ipsiSCL6T12
Spinal cord layer 3 T1ipsiSCL3T13
Spinal cord layer 4 T1ipsiSCL4T13
Spinal cord layer 1 T1ipsiSCL1T13
Spinal cord layer 2 T1ipsiSCL2T13
Ventral horn T1ipsiVHT11
Spinal cord layer 7 T1ipsiSCL7T12
Thoracal segment 2ipsiT2-0.5
Intermediolateral cell column T2ipsiIMLT21
Intermediomedial cell column T2ipsiIMMT22
Spinal cord layers T2ipsiSCLT2-0.5
Area X T2ipsiSCL10T22
Dorsal horn T2ipsiDHT22
Spinal cord layer 6 T2ipsiSCL6T22
Spinal cord layer 3 T2ipsiSCL3T23
Spinal cord layer 4 T2ipsiSCL4T23
Spinal cord layer 1 T2ipsiSCL1T23
Spinal cord layer 2 T2ipsiSCL2T23
Ventral horn T2ipsiVHT21
Spinal cord layer 7 T2ipsiSCL7T22
Spinal cord layer 9 T2ipsiSCL9T22
Thoracal segment 3ipsiT3-0.5
Intermediolateral cell column T3ipsiIMLT31
Intermediomedial cell column T3ipsiIMMT32
Area X T3ipsiSCL10T32
Dorsal horn T3ipsiDHT32
Spinal cord layer 6 T3ipsiSCL6T32
Spinal cord layer 3 T3ipsiSCL3T33
Spinal cord layer 4 T3ipsiSCL4T33
Spinal cord layer 1 T3ipsiSCL1T33
Spinal cord layer 2 T3ipsiSCL2T33
Ventral horn T3ipsiVHT31
Spinal cord layer 7 T3ipsiSCL7T32
Spinal cord layer 9 T3ipsiSCL9T32
Thoracal segment 4ipsiT4-0.5
Intermediolateral cell column T4ipsiIMLT41
Intermediomedial cell column T4ipsiIMMT42
Area X T4ipsiSCL10T42
Dorsal horn T4ipsiDHT42
Spinal cord layer 6 T4ipsiSCL6T42
Spinal cord layer 3 T4ipsiSCL3T43
Spinal cord layer 4 T4ipsiSCL4T43
Spinal cord layer 1 T4ipsiSCL1T43
Spinal cord layer 2 T4ipsiSCL2T43
Ventral horn T4ipsiVHT41
Spinal cord layer 7 T4ipsiSCL7T42
Thoracal segment 5ipsiT5-0.5
Intermediolateral cell column T5ipsiIMLT51
Intermediomedial cell column T5ipsiIMMT52
Area X T5ipsiSCL10T52
Dorsal horn T5ipsiDHT52
Spinal cord layer 6 T5ipsiSCL6T52
Spinal cord layer 3 T5ipsiSCL3T53
Spinal cord layer 4 T5ipsiSCL4T53
Spinal cord layer 1 T5ipsiSCL1T53
Spinal cord layer 2 T5ipsiSCL2T53
Ventral horn T5ipsiVHT51
Spinal cord layer 7 T5ipsiSCL7T52
Thoracal segment 6ipsiT6-0.5
Intermediolateral cell column T6ipsiIMLT61
Intermediomedial cell column T6ipsiIMMT62
Area X T6ipsiSCL10T62
Dorsal horn T6ipsiDHT62
Spinal cord layer 6 T6ipsiSCL6T62
Spinal cord layer 3 T6ipsiSCL3T63
Spinal cord layer 4 T6ipsiSCL4T63
Spinal cord layer 1 T6ipsiSCL1T63
Spinal cord layer 2 T6ipsiSCL2T63
Ventral horn T6ipsiVHT61
Spinal cord layer 7 T6ipsiSCL7T62
Thoracal segment 7ipsiT7-0.5
Intermediolateral cell column T7ipsiIMLT71
Intermediomedial cell column T7ipsiIMMT72
Area X T7ipsiSCL10T72
Dorsal horn T7ipsiDHT72
Spinal cord layer 6 T7ipsiSCL6T72
Spinal cord layer 3 T7ipsiSCL3T73
Spinal cord layer 4 T7ipsiSCL4T73
Spinal cord layer 1 T7ipsiSCL1T73
Spinal cord layer 2 T7ipsiSCL2T73
Ventral horn T7ipsiVHT71
Spinal cord layer 7 T7ipsiSCL7T72
Thoracal segment 8ipsiT8-0.5
Intermediolateral cell column T8ipsiIMLT81
Intermediomedial cell column T8ipsiIMMT82
Area X T8ipsiSCL10T82
Dorsal horn T8ipsiDHT82
Spinal cord layer 6 T8ipsiSCL6T82
Spinal cord layer 3 T8ipsiSCL3T83
Spinal cord layer 4 T8ipsiSCL4T83
Spinal cord layer 1 T8ipsiSCL1T83
Spinal cord layer 2 T8ipsiSCL2T83
Ventral horn T8ipsiVHT81
Spinal cord layer 7 T8ipsiSCL7T82
Thoracal segment 9ipsiT9-0.5
Intermediolateral cell column T9ipsiIMLT91
Intermediomedial cell column T9ipsiIMMT92
Area X T9ipsiSCL10T92
Dorsal horn T9ipsiDHT92
Spinal cord layer 6 T9ipsiSCL6T92
Spinal cord layer 3 T9ipsiSCL3T93
Spinal cord layer 4 T9ipsiSCL4T93
Spinal cord layer 1 T9ipsiSCL1T93
Spinal cord layer 2 T9ipsiSCL2T93
Ventral horn T9ipsiVHT91
Spinal cord layer 7 T9ipsiSCL7T92
Thoracal segment 10ipsiT10-0.5
Intermediolateral cell column T10ipsiIMLT101
Intermediomedial cell column T10ipsiIMMT102
Area X T10ipsiSCL10T102
Dorsal horn T10ipsiDHT102
Spinal cord layer 6 T10ipsiSCL6T102
Spinal cord layer 3 T10ipsiSCL3T103
Spinal cord layer 4 T10ipsiSCL4T103
Spinal cord layer 1 T10ipsiSCL1T103
Spinal cord layer 2 T10ipsiSCL2T103
Ventral horn T10ipsiVHT101
Spinal cord layer 7 T10ipsiSCL7T102
Thoracal segment 11ipsiT11-0.5
Intermediolateral cell column T11ipsiIMLT111
Intermediomedial cell column T11ipsiIMMT112
Area X T11ipsiSCL10T112
Dorsal horn T11ipsiDHT112
Spinal cord layer 6 T11ipsiSCL6T112
Spinal cord layer 3 T11ipsiSCL3T113
Spinal cord layer 4 T11ipsiSCL4T113
Spinal cord layer 1 T11ipsiSCL1T113
Spinal cord layer 2 T11ipsiSCL2T113
Ventral horn T11ipsiVHT111
Spinal cord layer 7 T11ipsiSCL7T112
Thoracal segment 12ipsiT12-0.5
Intermediolateral cell column T12ipsiIMLT121
Intermediomedial cell column T12ipsiIMMT122
Area X T12ipsiSCL10T122
Dorsal horn T12ipsiDHT122
Spinal cord layer 6 T12ipsiSCL6T122
Spinal cord layer 3 T12ipsiSCL3T123
Spinal cord layer 4 T12ipsiSCL4T123
Spinal cord layer 1 T12ipsiSCL1T123
Spinal cord layer 2 T12ipsiSCL2T123
Ventral horn T12ipsiVHT121
Spinal cord layer 7 T12ipsiSCL7T122
Thoracal segment 13ipsiT13-0.5
Intermediolateral cell column T13ipsiIMLT131
Intermediomedial cell column T13ipsiIMMT132
Area X T13ipsiSCL10T132
Dorsal horn T13ipsiDHT132
Spinal cord layer 5 T13ipsiSCL5T132
Spinal cord layer 6 T13ipsiSCL6T132
Spinal cord layer 3 T13ipsiSCL3T133
Spinal cord layer 4 T13ipsiSCL4T133
Spinal cord layer 1 T13ipsiSCL1T133
Spinal cord layer 2 T13ipsiSCL2T133
Ventral horn T13ipsiVHT131
Spinal cord layer 7 T13ipsiSCL7T132
Thoracic intermediolateral cell columnipsiTSegiL-0.5
Lumbar segmentsipsiLSeg3
Lumbar segment 1ipsiL13
Intermediolateral cell column L1ipsiIMLL1-0.5
Intermediomedial cell column L1ipsiIMML11
Dorsal horn L1ipsiDHL11
Spinal cord layer 5 L1ipsiSCL5L12
Spinal cord layer 3 L1ipsiSCL3L13
Spinal cord layer 4 L1ipsiSCL4L13
Spinal cord layer 1 L1ipsiSCL1L13
Spinal cord layer 2 L1ipsiSCL2L13
Ventral horn L1ipsiVHL10.5
Lumbar segment 2ipsiL23
Intermediolateral cell column L2ipsiIMLL2-0.5
Intermediomedial cell column L2ipsiIMML21
Dorsal horn L2ipsiDHL21
Spinal cord layer 5 L2ipsiSCL5L22
Spinal cord layer 3 L2ipsiSCL3L23
Spinal cord layer 4 L2ipsiSCL4L23
Spinal cord layer 1 L2ipsiSCL1L23
Spinal cord layer 2 L2ipsiSCL2L23
Ventral horn L2ipsiVHL20.5
Lumbar segment 3ipsiL33
Intermediolateral cell column L3ipsiIMLL3-0.5
Intermediomedial cell column L3ipsiIMML31
Dorsal horn L3ipsiDHL31
Spinal cord layer 5 L3ipsiSCL5L32
Spinal cord layer 3 L3ipsiSCL3L33
Spinal cord layer 4 L3ipsiSCL4L33
Spinal cord layer 1 L3ipsiSCL1L33
Spinal cord layer 2 L3ipsiSCL2L33
Ventral horn L3ipsiVHL30.5
Lumbar segment 4ipsiL43
Intermediolateral cell column L4ipsiIMLL4-0.5
Intermediomedial cell column L4ipsiIMML41
Dorsal horn L4ipsiDHL41
Spinal cord layer 3 L4ipsiSCL3L43
Spinal cord layer 4 L4ipsiSCL4L43
Spinal cord layer 1 L4ipsiSCL1L43
Spinal cord layer 2 L4ipsiSCL2L43
Ventral horn L4ipsiVHL40.5
Lumbar segment 5ipsiL53
Intermediolateral cell column L5ipsiIMLL5-0.5
Intermediomedial cell column L5ipsiIMML51
Dorsal horn L5ipsiDHL51
Spinal cord layer 3 L5ipsiSCL3L53
Spinal cord layer 4 L5ipsiSCL4L53
Spinal cord layer 1 L5ipsiSCL1L53
Spinal cord layer 2 L5ipsiSCL2L53
Ventral horn L5ipsiVHL50.5
Lumbar segment 6ipsiL63
Intermediolateral cell column L6ipsiIMLL6-0.5
Intermediomedial cell column L6ipsiIMML61
Dorsal horn L6ipsiDHL61
Spinal cord layer 3 L6ipsiSCL3L63
Spinal cord layer 4 L6ipsiSCL4L63
Spinal cord layer 1 L6ipsiSCL1L63
Spinal cord layer 2 L6ipsiSCL2L63
Ventral horn L6ipsiVHL60.5
Sacral segment 1ipsiSa1-0.5
Spinal cord layer 3 S1ipsiSCL3S13
Spinal cord layer 4 S1ipsiSCL4S13
Spinal cord layer 1 S1ipsiSCL1S13
Spinal cord layer 2 S1ipsiSCL2S13
Sacral segment 2ipsiSa2-0.5
Spinal cord layer 3 S2ipsiSCL3S23
Spinal cord layer 4 S2ipsiSCL4S23
Spinal cord layer 1 S2ipsiSCL1S23
Spinal cord layer 2 S2ipsiSCL2S23
Sacral segment 3ipsiSa3-0.5
Spinal cord layer 3 S3ipsiSCL3S33
Spinal cord layer 4 S3ipsiSCL4S33
Spinal cord layer 1 S3ipsiSCL1S33
Spinal cord layer 2 S3ipsiSCL2S33
Sacral segment 4ipsiSa4-0.5
Spinal cord layer 3 S4ipsiSCL3S43
Spinal cord layer 4 S4ipsiSCL4S43
Spinal cord layer 1 S4ipsiSCL1S43
Spinal cord layer 2 S4ipsiSCL2S43
Motorneuron groups in the ventral horn of spinal cordipsimnVHMES3
Tracheal parasympathetic preganglionic neuronsipsiTPPN1
Periaqueductal graycontraPAG1
Red nucleuscontraR0
Inferior colliculuscontraICOL1.5
Substantia nigra A9contraSN0.5
Ventral tegmental area A10 caudomedial partcontraVTACM0
Interfascicular nucleuscontraIF0
Ventral tegmental area A10 medial partcontraVTAM0.5
Parabrachial nucleuscontraPB0
Facial nucleuscontra71
Hypoglossal nucleuscontra12S1
Hypoglossal motor nucleuscontra12M1
Motor trigeminal nucleuscontraMo50.5
Nucleus of the solitary tract intermediate partcontraSolIM1
Parasolitary nucleuscontraPSol1
Rostral linear nucleus of the raphecontraRLi0.5
Central raphe nucleuscontraCRN0.5
Gracile nucleus principal partcontraGr1
Anteroventral periventricular nucleus [Anterior hypothalamic area]contraAVPe0
Dorsomedial hypothalamic nucleus [Medial zone]contraDM-0.5
A8 dopamine cells retrorubral groupcontraRRF0.5
A8 dopamine cells retrorubral group medial partcontraRRFm0
Retrochiasmatic areacontraRCh0.5
Dorsolateral funiculuscontradlft0.5
Lateral funiculuscontralf1
Dorsolateral funiculus cervical part C5contradlftC50.5
Dorsolateral funiculus cervical part C6contradlftC60.5
Stria medullaris of the thalamuscontrasm0
Fornixcontraf0
Interpeduncular nucleuscontraIP0.5
Intermediolateral cell column pars principaliscontraIMLp0.5
Ventral funiculuscontravf3
Intermediomedial cell column C1contraIMMC12
Dorsal horn C1contraDHC12
Spinal cord layer 3 C1contraSCL3C10.5
Spinal cord layer 4 C1contraSCL4C10.5
Spinal cord layer 1 C1contraSCL1C10.5
Spinal cord layer 2 C1contraSCL2C10.5
Ventral horn C1contraVHC11
Intermediomedial cell column C2contraIMMC22
Dorsal horn C2contraDHC22
Spinal cord layer 3 C2contraSCL3C20.5
Spinal cord layer 4 C2contraSCL4C20.5
Spinal cord layer 1 C2contraSCL1C20.5
Spinal cord layer 2 C2contraSCL2C20.5
Ventral horn C2contraVHC21
Intermediomedial cell column C3contraIMMC32
Dorsal horn C3contraDHC32
Spinal cord layer 3 C3contraSCL3C30.5
Spinal cord layer 4 C3contraSCL4C30.5
Spinal cord layer 1 C3contraSCL1C30.5
Spinal cord layer 2 C3contraSCL2C30.5
Ventral horn C3contraVHC31
Intermediomedial cell column C4contraIMMC42
Dorsal horn C4contraDHC42
Spinal cord layer 5 C4contraSCL5C41
Spinal cord layer 3 C4contraSCL3C41
Spinal cord layer 4 C4contraSCL4C41
Spinal cord layer 1 C4contraSCL1C41
Spinal cord layer 2 C4contraSCL2C41
Ventral horn C4contraVHC41
Cervical segment 5contraCS51
Intermediomedial cell column C5contraIMMC52
Dorsal horn C5contraDHC52
Spinal cord layer 5 C5contraSCL5C51
Spinal cord layer 3 C5contraSCL3C53
Spinal cord layer 4 C5contraSCL4C51
Spinal cord layer 1 C5contraSCL1C53
Spinal cord layer 2 C5contraSCL2C53
Ventral horn C5contraVHC51
Cervical segment 6contraCS61
Intermediomedial cell column C6contraIMMC62
Dorsal horn C6contraDHC62
Spinal cord layer 5 C6contraSCL5C61
Spinal cord layer 3 C6contraSCL3C61
Spinal cord layer 4 C6contraSCL4C61
Spinal cord layer 1 C6contraSCL1C61
Spinal cord layer 2 C6contraSCL2C61
Ventral horn C6contraVHC61
Intermediomedial cell column C7contraIMMC72
Dorsal horn C7contraDHC72
Spinal cord layer 5 C7contraSCL5C71
Spinal cord layer 3 C7contraSCL3C71
Spinal cord layer 4 C7contraSCL4C71
Spinal cord layer 1 C7contraSCL1C71
Spinal cord layer 2 C7contraSCL2C71
Ventral horn C7contraVHC71
Intermediomedial cell column C8contraIMMC82
Dorsal horn C8contraDHC82
Spinal cord layer 3 C8contraSCL3C80.5
Spinal cord layer 4 C8contraSCL4C80.5
Spinal cord layer 1 C8contraSCL1C80.5
Spinal cord layer 2 C8contraSCL2C80.5
Ventral horn C8contraVHC81
Intermediomedial cell column T1contraIMMT11
Dorsal horn T1contraDHT11
Spinal cord layer 3 T1contraSCL3T10.5
Spinal cord layer 4 T1contraSCL4T10.5
Spinal cord layer 1 T1contraSCL1T10.5
Spinal cord layer 2 T1contraSCL2T10.5
Ventral horn T1contraVHT10.5
Intermediomedial cell column T2contraIMMT21
Dorsal horn T2contraDHT21
Spinal cord layer 3 T2contraSCL3T20.5
Spinal cord layer 4 T2contraSCL4T20.5
Spinal cord layer 1 T2contraSCL1T20.5
Spinal cord layer 2 T2contraSCL2T20.5
Ventral horn T2contraVHT20.5
Spinal cord layer 9 T2contraSCL9T21
Intermediomedial cell column T3contraIMMT31
Dorsal horn T3contraDHT31
Spinal cord layer 3 T3contraSCL3T30.5
Spinal cord layer 4 T3contraSCL4T30.5
Spinal cord layer 1 T3contraSCL1T30.5
Spinal cord layer 2 T3contraSCL2T30.5
Ventral horn T3contraVHT30.5
Spinal cord layer 9 T3contraSCL9T31
Intermediomedial cell column T4contraIMMT41
Dorsal horn T4contraDHT41
Spinal cord layer 3 T4contraSCL3T40.5
Spinal cord layer 4 T4contraSCL4T40.5
Spinal cord layer 1 T4contraSCL1T40.5
Spinal cord layer 2 T4contraSCL2T40.5
Ventral horn T4contraVHT40.5
Intermediomedial cell column T5contraIMMT51
Dorsal horn T5contraDHT51
Spinal cord layer 3 T5contraSCL3T50.5
Spinal cord layer 4 T5contraSCL4T50.5
Spinal cord layer 1 T5contraSCL1T50.5
Spinal cord layer 2 T5contraSCL2T50.5
Ventral horn T5contraVHT50.5
Intermediomedial cell column T6contraIMMT61
Dorsal horn T6contraDHT61
Spinal cord layer 3 T6contraSCL3T60.5
Spinal cord layer 4 T6contraSCL4T60.5
Spinal cord layer 1 T6contraSCL1T60.5
Spinal cord layer 2 T6contraSCL2T60.5
Ventral horn T6contraVHT60.5
Intermediomedial cell column T7contraIMMT71
Dorsal horn T7contraDHT71
Spinal cord layer 3 T7contraSCL3T70.5
Spinal cord layer 1 T7contraSCL1T70.5
Spinal cord layer 4 T7contraSCL4T70.5
Spinal cord layer 2 T7contraSCL2T70.5
Ventral horn T7contraVHT70.5
Intermediomedial cell column T8contraIMMT81
Dorsal horn T8contraDHT81
Spinal cord layer 3 T8contraSCL3T80.5
Spinal cord layer 4 T8contraSCL4T80.5
Spinal cord layer 1 T8contraSCL1T80.5
Spinal cord layer 2 T8contraSCL2T80.5
Ventral horn T8contraVHT80.5
Intermediomedial cell column T9contraIMMT91
Dorsal horn T9contraDHT91
Spinal cord layer 3 T9contraSCL3T90.5
Spinal cord layer 4 T9contraSCL4T90.5
Spinal cord layer 1 T9contraSCL1T90.5
Spinal cord layer 2 T9contraSCL2T90.5
Ventral horn T9contraVHT90.5
Intermediomedial cell column T10contraIMMT101
Dorsal horn T10contraDHT101
Spinal cord layer 3 T10contraSCL3T100.5
Spinal cord layer 4 T10contraSCL4T100.5
Spinal cord layer 1 T10contraSCL1T100.5
Spinal cord layer 2 T10contraSCL2T100.5
Ventral horn T10contraVHT100.5
Intermediomedial cell column T11contraIMMT111
Dorsal horn T11contraDHT111
Spinal cord layer 3 T11contraSCL3T110.5
Spinal cord layer 4 T11contraSCL4T110.5
Spinal cord layer 1 T11contraSCL1T110.5
Spinal cord layer 2 T11contraSCL2T110.5
Ventral horn T11contraVHT110.5
Intermediomedial cell column T12contraIMMT121
Dorsal horn T12contraDHT121
Spinal cord layer 3 T12contraSCL3T120.5
Spinal cord layer 4 T12contraSCL4T120.5
Spinal cord layer 1 T12contraSCL1T120.5
Spinal cord layer 2 T12contraSCL2T120.5
Ventral horn T12contraVHT120.5
Intermediomedial cell column T13contraIMMT131
Dorsal horn T13contraDHT131
Spinal cord layer 5 T13contraSCL5T131
Spinal cord layer 3 T13contraSCL3T131
Spinal cord layer 4 T13contraSCL4T131
Spinal cord layer 1 T13contraSCL1T131
Spinal cord layer 2 T13contraSCL2T131
Ventral horn T13contraVHT130.5
Intermediomedial cell column L1contraIMML10.5
Dorsal horn L1contraDHL10.5
Spinal cord layer 5 L1contraSCL5L11
Spinal cord layer 3 L1contraSCL3L11
Spinal cord layer 4 L1contraSCL4L11
Spinal cord layer 1 L1contraSCL1L11
Spinal cord layer 2 L1contraSCL2L11
Ventral horn L1contraVHL10.5
Intermediomedial cell column L2contraIMML20.5
Dorsal horn L2contraDHL20.5
Spinal cord layer 5 L2contraSCL5L21
Spinal cord layer 3 L2contraSCL3L21
Spinal cord layer 4 L2contraSCL4L21
Spinal cord layer 1 L2contraSCL1L21
Spinal cord layer 2 L2contraSCL2L21
Ventral horn L2contraVHL20.5
Intermediomedial cell column L3contraIMML30.5
Dorsal horn L3contraDHL30.5
Spinal cord layer 5 L3contraSCL5L31
Spinal cord layer 3 L3contraSCL3L31
Spinal cord layer 4 L3contraSCL4L31
Spinal cord layer 1 L3contraSCL1L31
Spinal cord layer 2 L3contraSCL2L31
Ventral horn L3contraVHL30.5
Intermediomedial cell column L4contraIMML40.5
Dorsal horn L4contraDHL40.5
Spinal cord layer 3 L4contraSCL3L40.5
Spinal cord layer 4 L4contraSCL4L40.5
Spinal cord layer 1 L4contraSCL1L40.5
Spinal cord layer 2 L4contraSCL2L40.5
Ventral horn L4contraVHL40.5
Intermediomedial cell column L5contraIMML50.5
Dorsal horn L5contraDHL50.5
Spinal cord layer 3 L5contraSCL3L50.5
Spinal cord layer 4 L5contraSCL4L50.5
Spinal cord layer 1 L5contraSCL1L50.5
Spinal cord layer 2 L5contraSCL2L50.5
Ventral horn L5contraVHL50.5
Intermediomedial cell column L6contraIMML60.5
Dorsal horn L6contraDHL60.5
Spinal cord layer 3 L6contraSCL3L60.5
Spinal cord layer 4 L6contraSCL4L60.5
Spinal cord layer 1 L6contraSCL1L60.5
Spinal cord layer 2 L6contraSCL2L60.5
Ventral horn L6contraVHL60.5
Spinal cord layer 3 S1contraSCL3S10.5
Spinal cord layer 4 S1contraSCL4S10.5
Spinal cord layer 1 S1contraSCL1S10.5
Spinal cord layer 2 S1contraSCL2S10.5
Spinal cord layer 3 S2contraSCL3S20.5
Spinal cord layer 4 S2contraSCL4S20.5
Spinal cord layer 1 S2contraSCL1S20.5
Spinal cord layer 2 S2contraSCL2S20.5
Spinal cord layer 3 S3contraSCL3S30.5
Spinal cord layer 4 S3contraSCL4S30.5
Spinal cord layer 1 S3contraSCL1S30.5
Spinal cord layer 2 S3contraSCL2S30.5
Spinal cord layer 3 S4contraSCL3S40.5
Spinal cord layer 4 S4contraSCL4S40.5
Spinal cord layer 1 S4contraSCL1S40.5
Spinal cord layer 2 S4contraSCL2S40.5
Sympathetic nervous systemipsiSNS1
Parasympathetic nervous systemipsiPaNS1
Ventral stomach wallipsiOrgsStomVWS-0.5
Ventral stomach wallcontraOrgsStomVWS-0.5
ColonipsiOrgsColonS2
Distal colonipsiOrgsColonDi-10
Intercapsular brown adipose tissueipsiOrgBATi-10
Adrenal glandipsiADRE-0.5
HindlimbipsiMuscHi-10
Gastrocnemius muscleipsiMuscGC-0.5
Inferior pharyngeal constrictor muscleipsiMusciPC-0.5
Posterior cricoarytenoid muscleipsiMuscPCA-0.5
Thyroarytenoid muscleipsiMuscTAr-0.5
Femoral bone marrowipsiOrgSkFemM2
ClitorisipsiOrgCLi1
Mammary glandipsiOrgMamG2
OvaryipsiOrgOvar2
VaginaipsiOrgVag-10
TestisipsiOrgTest2
Vas deferensipsiOrgVasDef2
KidneyipsiOrgsKid-0.5
Urinary bladderipsiOrgUrBLa3
SpleenipsiOrgSPL3
Femoral bone marrowcontraOrgSkFemM2
Mammary glandcontraOrgMamG-0.5
OvarycontraOrgOvar-0.5
TestiscontraOrgTest-0.5
Vas deferenscontraOrgVasDef-0.5
KidneycontraOrgsKid-0.5
SpleencontraOrgSPL-0.5

Input from

NameSideAbbr.WeightDetails
Ventrolateral periaqueductal grayipsiVLPAG3
Pedunculopontine tegmental nucleusipsiPPTg3
Cuneiforme nucleusipsiCnF3
Lateral parabrachial nucleusipsiLPB-0.5
Gigantocellular reticular nucleusipsiGi2.5
Gigantocellular reticular nucleus alpha partipsiGiA4
Gigantocellular reticular nucleus alpha part ventral partipsiGiAv-0.5
Medullary reticular nucleus lateral partipsiMdL0.5
Parvicellular reticular nucleusipsiPCRt1
C3 adrenaline cellsipsiC3-10
Spinal trigeminal nucleusipsiSp5nc-0.5
Dorsal cochlear nucleusipsiDC-0.5
Spinal vestibular nucleusipsiSpVe-0.5
Nucleus of the solitary tractipsiSol-0.5
Nucleus of the solitary tract caudal partipsiSolca-0.5
Nucleus of the solitary tract commissural partipsiSolC-0.5
Raphe magnus nucleusipsiRMg3
Lateral most portion of the ventrolateral medullaipsiLMVL-0.5
Rostral caudal midline medulla oblongataipsiRCMeObm-0.5
Dorsal column nucleiipsiDCN-0.5
Paragigantocellular reticular nucleusipsiPGi4
Paragigantocellular reticular nucleus ventral partipsiPGiV-0.5
Ventromedial medulla oblongataipsiMeObvm-0.5
Ventral part of the median preoptic nucleusipsiMnPOV0.5
Dorsal median preoptic nucleusipsiMnPOD-0.5
Dorsomedial hypothalamic nucleusipsiDMHy0
Perifornical hypothalamic area [Preoptic anterior region]ipsiPFxPAR0.5
Lateral hypothalamic area dorsal partipsiLHd0
Lateral hypothalamic area ventral partipsiLHAvp0.5
Dorsomedial hypothalamic nucleus [Medial zone]ipsiDM1
Periventricular zoneipsiPVZ0
Medial part of the caudal perifornical areaipsiPeFCM0.5
Lateral part of the caudal perifornical areaipsiPeFCL1
Central amygdaloid nucleus lateral divisionipsiCeL1
Central amygdaloid nucleus medial division rostral partipsiCeMR1
Ependymocytes of 4th ventricleipsi4Vepc0.5
Ventrolateral periaqueductal graycontraVLPAG1
Gigantocellular reticular nucleus alpha partcontraGiA2
Parvicellular reticular nucleuscontraPCRt1
Dorsal cochlear nucleuscontraDC3
Raphe magnus nucleuscontraRMg2
Lateral most portion of the ventrolateral medullacontraLMVL-0.5
Rostral caudal midline medulla oblongatacontraRCMeObm-0.5
Paragigantocellular reticular nucleuscontraPGi2
Dorsomedial hypothalamic nucleuscontraDMHy0
Perifornical hypothalamic area [Preoptic anterior region]contraPFxPAR-0.5
Lateral hypothalamic area dorsal partcontraLHd0
Lateral hypothalamic area ventral partcontraLHAvp-0.5
Dorsomedial hypothalamic nucleus [Medial zone]contraDM-0.5
Periventricular zonecontraPVZ0
Medial part of the caudal perifornical areacontraPeFCM-0.5
Lateral part of the caudal perifornical areacontraPeFCL-0.5
Vagus nerveipsiAutoV-0.5
Stomach wallipsiOrgsStomWS-0.5

Key for weights

ValueWeight
-3 unknown
-2 fibers of passage
-1 not clear
-0.5 exists
0 not present
0.5 very light
1 light / sparse
1.5 light / moderate
2 moderate / dense
2.5 moderate / strong
3 strong
4 very strong





Homepage | Staff | neuroVIISAS | Rat connectome | Other connectomes | Neuroimaging | Neurodegeneration | Students | Links | Publications