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Rat connectome

Primary somatosensory cortex barrel field layer 5 left

Abbreviation	S1BF5
Color
Superior regions	Primary somatosensory cortex barrel field deep layers

Synonyms	Abbr.	Language
Primary somatosensory cortex barrel field layer 5	S1BF5

Subregions	Side
Primary somatosensory cortex barrel field layer 5a	left
Primary somatosensory cortex barrel field layer 5b	left
Primary somatosensory cortex barrel field layer 5 slender tufted pyramidal cells	left
Primary somatosensory cortex barrel field layer 5 thick tufted pyramidal cells	left

Output to

Name	Side	Abbr.	Weight
Tectum	ipsi	TEC	0
Superior colliculus	ipsi	SC	-0.5
Pons	ipsi	P	-0.5
Medullary reticular nucleus ventral part	ipsi	MdV	-0.5
Trigeminal nucleus	ipsi	5	-0.5
Thalamus	ipsi	T	-0.5
Angular thalamic nucleus	ipsi	Ang	-0.5
Anterior group of the dorsal thalamus	ipsi	ATN	0
Centrolateral thalamic nucleus	ipsi	CL	3
Posterior thalamic nuclear group	ipsi	Po	-0.5
Medial part of posterior thalamic nuclear group	ipsi	PoM	4
Posterior thalamic nuclear group dorsal part	ipsi	PoDo	3
Arcuate nuclei of ventrobasal complex	ipsi	AVB	2
External nucleus of ventrobasal complex	ipsi	EVB	2
Ventral posteromedial thalamic nucleus	ipsi	VPM	-0.5
Medial laterodorsal thalamic nucleus rostromedial laterodorsal thalamic nucleus transition region	ipsi	LDmLDmrt	1
Posterior group	ipsi	PTG	-0.5
Posteromedian thalamic nucleus	ipsi	PoMn	1
Reticular thalamic nucleus	ipsi	Rt	1
Zona incerta	ipsi	ZI	-0.5
Pretectal region	ipsi	PRT	0
Anterior pretectal nucleus	ipsi	APT	1
Internal capsule	ipsi	ic	-2
Cerebral peduncle basal part	ipsi	cp	4
Corpus callosum	ipsi	cc	-2
Superior thalamic radiation	ipsi	str	-2
Pallidum	ipsi	PAL	-2
Striatum	ipsi	STR	2
Caudate putamen	ipsi	CPu	-0.5
Dorsolateral striatum	ipsi	CPudl	3
Infralimbic cortex	ipsi	IL	3
Whiskers motor cortex	ipsi	WMCx	3
Motoric regions layer 1	ipsi	MRL1	-0.5
Motoric regions deeper half of layer 3	ipsi	MRdhL3	3
Motoric regions layer 5	ipsi	MRL5	1.5
Motoric regions layer 6	ipsi	MRL6	-0.5
Motoric regions border of layer 5 and 6	ipsi	MRbL56	3
Primary somatosensory cortex	ipsi	S1	-0.5
Primary somatosensory cortex barrel field layer 6	ipsi	S1BF6	2
Infragranular layers of secondary somatosensory cortex	ipsi	S2IGL	2
Commissural systems	ipsi	cos	-2
Dorsal geniculate nucleus lateral part	ipsi	DLGl	0
Striatum	contra	STR	1

Input from

Name	Side	Abbr.	Weight
Ventral posterior thalamic complex	ipsi	VPT	-0.5
Ventral posterior thalamic complex medial part	ipsi	VPTm	-0.5
Mid-dorsoventral of the ventral posterolateral thalamic nucleus	ipsi	VPLmdv	1
Ventral posteromedial thalamic nucleus	ipsi	VPM	1
Ventrobasal complex lateral part dorsal part	ipsi	VBLD	1
Ventrobasal complex lateral part medial region	ipsi	VBLM	1
Dorsomedial part of ventrobasal complex medial part	ipsi	VBMDM	2
Posteromedian thalamic nucleus	ipsi	PoMn	1
Posteromedial barrel subfield vibrissae row C supragranular layers	ipsi	PMBSFCsL	0.5
Primary somatosensory cortex barrel field layer 6a thalamus non projecting neurons	ipsi	S1BF6a-	-0.5
Primary somatosensory cortex barrel field layer 6 inhibitory neurons	ipsi	S1BF6in	-0.5
Primary somatosensory cortex barrel field layer 5 inhibitory cells of layer 6	ipsi	S1BF5icL6	-0.5
Primary somatosensory cortex barrel field layer 5 and layer 6 inhibitors	ipsi	S1BFL5L6iL6	-0.5
Vibrissal follicle complex C3	ipsi	VFCC3	1

Key for weights

Value	Weight
-3	unknown
-2	fibers of passage
-1	not clear
-0.5	exists
0	not present
0.5	very light
1	light / sparse
1.5	light / moderate
2	moderate / dense
2.5	moderate / strong
3	strong
4	very strong